FFCP PHASE1:Mm9::chr15:95358973..95358996,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=54003|HGNC=|MCL_coexpression_id=13|UniProt=Q8BM06|association_with_transcript=0bp_to_ENSMUST00000023090_5end|description=CAGE_peak_4_at_Nell2_5end|id=chr15:95358973..95358996,-|ontology_enrichment_celltype=CL:0000540!2.37e-19!33;CL:0000047!2.37e-19!33;CL:0000031!2.37e-19!33;CL:0000404!2.37e-19!33;CL:0000393!4.90e-14!39;CL:0000211!4.90e-14!39;CL:0000117!6.34e-14!23;CL:0000337!6.34e-14!23;CL:0000221!3.03e-13!44;CL:0000133!3.03e-13!44;CL:0002319!5.71e-13!43;CL:0000055!3.43e-09!50|ontology_enrichment_celltype_v019_2=CL:0000540,8.54e-28,33;CL:0000047,8.54e-28,33;CL:0000031,8.54e-28,33;CL:0000404,8.54e-28,33;CL:0000393,4.83e-22,39;CL:0000211,4.83e-22,39;CL:0002319,2.04e-20,43;CL:0000117,5.46e-20,23;CL:0000337,5.46e-20,23;CL:0000221,9.83e-20,44;CL:0000133,9.83e-20,44;CL:0000107,7.01e-10,9;CL:0002321,4.62e-09,70;CL:0002609,8.46e-09,6|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!9.97e-33!73;UBERON:0005743!9.97e-33!73;UBERON:0000073!5.01e-31!75;UBERON:0001016!5.01e-31!75;UBERON:0001049!3.38e-26!52;UBERON:0005068!3.38e-26!52;UBERON:0006241!3.38e-26!52;UBERON:0007135!3.38e-26!52;UBERON:0002346!4.17e-26!71;UBERON:0003075!4.17e-26!71;UBERON:0007284!4.17e-26!71;UBERON:0004121!5.26e-24!102;UBERON:0000924!5.26e-24!102;UBERON:0006601!5.26e-24!102;UBERON:0000033!2.97e-23!63;UBERON:0000955!1.10e-22!50;UBERON:0006238!1.10e-22!50;UBERON:0003056!1.41e-22!49;UBERON:0002616!3.42e-22!49;UBERON:0002020!2.99e-21!34;UBERON:0003080!3.76e-21!40;UBERON:0002780!1.02e-20!39;UBERON:0001890!1.02e-20!39;UBERON:0006240!1.02e-20!39;UBERON:0002791!2.25e-17!29;UBERON:0003528!2.25e-17!29;UBERON:0001893!2.25e-17!29;UBERON:0000956!4.46e-13!21;UBERON:0001869!4.46e-13!21;UBERON:0000203!4.46e-13!21;UBERON:0000153!1.08e-12!94;UBERON:0007811!2.14e-12!86;UBERON:0002619!2.86e-10!17;UBERON:0002021!1.04e-08!10;UBERON:0000411!1.04e-08!10;UBERON:0001950!1.04e-08!10|ontology_enrichment_uberon_v019_2=UBERON:0001017,6.14e-40,73;UBERON:0001016,1.91e-38,75;UBERON:0002346,2.31e-35,64;UBERON:0003075,2.31e-35,64;UBERON:0007284,2.31e-35,64;UBERON:0004121,3.04e-35,95;UBERON:0000924,3.04e-35,95;UBERON:0006601,3.04e-35,95;UBERON:0002020,1.34e-32,34;UBERON:0000073,7.90e-31,54;UBERON:0010371,3.34e-29,73;UBERON:0001049,4.42e-29,52;UBERON:0005068,4.42e-29,52;UBERON:0006241,4.42e-29,52;UBERON:0007135,4.42e-29,52;UBERON:0003056,4.46e-27,49;UBERON:0003528,3.39e-26,29;UBERON:0002791,3.39e-26,29;UBERON:0001893,3.39e-26,29;UBERON:0000955,1.08e-24,47;UBERON:0006238,1.08e-24,47;UBERON:0003080,2.11e-24,40;UBERON:0002616,6.23e-24,46;UBERON:0002780,1.07e-23,39;UBERON:0001890,1.07e-23,39;UBERON:0006240,1.07e-23,39;UBERON:0000956,9.63e-22,21;UBERON:0001869,9.63e-22,21;UBERON:0000203,9.63e-22,21;UBERON:0010314,3.28e-20,92;UBERON:0002619,4.86e-17,17;UBERON:0002021,1.95e-13,10;UBERON:0000411,1.95e-13,10;UBERON:0001950,1.95e-13,10;UBERON:0002410,7.01e-10,9;UBERON:0000010,1.05e-07,11;UBERON:0011216,1.17e-07,194;UBERON:0000025,1.18e-07,114;UBERON:0001948,1.50e-07,5;UBERON:0002315,1.50e-07,5;UBERON:0000369,2.29e-07,5;UBERON:0002435,2.29e-07,5;UBERON:0000204,2.29e-07,5;UBERON:0010082,2.29e-07,5|phase1_expression=0.320297694209588,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.680346321208558,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.09012578190223,0,0,0.139986421625363,0,0,0,0,0,0,0,4.45096213891115,3.1739458756322,5.70448263155561,0,0,0,0,0,0,0,3.31806759387129,6.07526722492608,5.25812403378455,10.2834354385369,5.30084498283872,6.00204916153275,6.03826467414889,9.19218786610021,0,1.40456071893706,1.84327839907492,5.67111037239834,5.30628332893976,5.2091337055676,0.279182999001381,0.56276261003168,2.13917546887534,4.41942878210502,4.8406371471695,7.26957838718672,0,0,0,0,0,0,0,0,0,0,0,0,0.704217098883403,0,0,0,0,0,0,0.11418387971906,0,0,0.173485326766136,0.608930956624282,0,0,0,0,0,0,0,0,0,0,0,1.17112318804619,1.04723353406728,0,0,0,0,1.19832511523858,3.66000482254901,7.53926112677186,5.73620256634512,5.8814555185976,3.53239675751252,3.0825839982874,0,0,0,0,0.260240885925407,1.37941262660084,2.70093194708024,2.26057226753573,1.2246569847239,1.5373646434182,1.49922759295566,0,0.215567992932842,0.378212160335639,0.879755620819744,0.219195732427575,0.278047249225598,0.348252166522167,0,0.199034266818493,0,0,0,0,0.234526059981096,0.36012412292203,0,0,0.154267112887378,0,0,0,0,0,0,0,0,0,9.2527577368216,5.35103984372279,0.330418782983798,0,0.213288250535234,0.928946687441754,1.41754207454303,0,0.22237804384487,0.190225626112559,0,0.329397909448022,0,0,0,0,0,0,0.189667900953082,0.456994050438915,0,0.203651327845314,0.193952487167626,0.210407459670956,0.0632365371242573,0,0,0,0,0,0.196558995113203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32643988239339,0,0.169745085775188,0,0,0.238043640886014,0,0,0,0,0,0.172684981865896,0,0,0,0,0,0.963303539926752,0.703270119553219,0,0,2.52406575533005,3.51394869866975,4.95473814785438,1.43381278771531,3.11918143715352,3.39691836946599,2.02405350837447,2.92255857911312,3.55759000151871,1.28528526568723,0,0.178065603667255,0,0,0,0.242780636154981,0,0,0,0,0,0,0.356497378384721,0,0,0,0.340439605753788,0.900305470156551,0.517434735131018,0.643011105094777,1.41872186913819,0.891844088010353,0.658196082408484,1.2178597964584,0,0,0,0,0,0,0,0,0,0.556275906031529,0,1.44470807574256,0.185194527369712,0.188368457004691,0,0,0,0,0,0,1.73984796469624,0.406638934253697,0.540026704109006,0.209088296014469,0.218362563746178,0.539457385539283,0,0,0,0,0,0.299033092087958,0,0,0.129159823477731,0,0.352071715937262,0.2604087696879,0.104859344425711,0,0,0,0.405450430580328,0.102710957164827,0,0,0,0.120195449519969,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.21227026878773,5.9842280745933,6.30185064783336,6.70227411140382,6.16574267793578,6.0431511791176,5.40018000185445,4.95353323546643,4.07828168085784,2.07104124700728,0.830298780673413,2.39414924040619,2.39027048055788,0.972426868273176,0.209613162627982,0.551530525350042,0.888986911206461,0.824140228955577,0,1.26348605881899,2.02783439912192,1.13175804831646,0.37456602987953,0.768301828858431,0.574354689556133,0,0.231768651889711,1.35036454324594,0.412085900803307,1.17759136107518,0.685738504770831,0.70990322463735,1.1921809497366,0.581385666529314,1.12931256498397,0.761531471025089,1.28049581010941,1.05227884575137,0.950628796921032,1.12228454331548,0.711810108745045,0.985044823755635,0.818462086339379,1.23949472948773,0.385813221962283,0.999242311751784,0.701794825336225,0.644613162144895,0.382576664137687,0.220591419119515,0.231867835620421|short_description=p4@Nell2}} | ||
|EntrezGene=54003 | |||
|HGNC= | |||
|MCL_coexpression_id=13 | |||
|UniProt=Q8BM06 | |||
|association_with_transcript=0bp_to_ENSMUST00000023090_5end | |||
|description=CAGE_peak_4_at_Nell2_5end | |||
|id=chr15:95358973..95358996,- | |||
|ontology_enrichment_celltype=CL:0000540!2.37e-19!33;CL:0000047!2.37e-19!33;CL:0000031!2.37e-19!33;CL:0000404!2.37e-19!33;CL:0000393!4.90e-14!39;CL:0000211!4.90e-14!39;CL:0000117!6.34e-14!23;CL:0000337!6.34e-14!23;CL:0000221!3.03e-13!44;CL:0000133!3.03e-13!44;CL:0002319!5.71e-13!43;CL:0000055!3.43e-09!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,8.54e-28,33;CL:0000047,8.54e-28,33;CL:0000031,8.54e-28,33;CL:0000404,8.54e-28,33;CL:0000393,4.83e-22,39;CL:0000211,4.83e-22,39;CL:0002319,2.04e-20,43;CL:0000117,5.46e-20,23;CL:0000337,5.46e-20,23;CL:0000221,9.83e-20,44;CL:0000133,9.83e-20,44;CL:0000107,7.01e-10,9;CL:0002321,4.62e-09,70;CL:0002609,8.46e-09,6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!9.97e-33!73;UBERON:0005743!9.97e-33!73;UBERON:0000073!5.01e-31!75;UBERON:0001016!5.01e-31!75;UBERON:0001049!3.38e-26!52;UBERON:0005068!3.38e-26!52;UBERON:0006241!3.38e-26!52;UBERON:0007135!3.38e-26!52;UBERON:0002346!4.17e-26!71;UBERON:0003075!4.17e-26!71;UBERON:0007284!4.17e-26!71;UBERON:0004121!5.26e-24!102;UBERON:0000924!5.26e-24!102;UBERON:0006601!5.26e-24!102;UBERON:0000033!2.97e-23!63;UBERON:0000955!1.10e-22!50;UBERON:0006238!1.10e-22!50;UBERON:0003056!1.41e-22!49;UBERON:0002616!3.42e-22!49;UBERON:0002020!2.99e-21!34;UBERON:0003080!3.76e-21!40;UBERON:0002780!1.02e-20!39;UBERON:0001890!1.02e-20!39;UBERON:0006240!1.02e-20!39;UBERON:0002791!2.25e-17!29;UBERON:0003528!2.25e-17!29;UBERON:0001893!2.25e-17!29;UBERON:0000956!4.46e-13!21;UBERON:0001869!4.46e-13!21;UBERON:0000203!4.46e-13!21;UBERON:0000153!1.08e-12!94;UBERON:0007811!2.14e-12!86;UBERON:0002619!2.86e-10!17;UBERON:0002021!1.04e-08!10;UBERON:0000411!1.04e-08!10;UBERON:0001950!1.04e-08!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,6.14e-40,73;UBERON:0001016,1.91e-38,75;UBERON:0002346,2.31e-35,64;UBERON:0003075,2.31e-35,64;UBERON:0007284,2.31e-35,64;UBERON:0004121,3.04e-35,95;UBERON:0000924,3.04e-35,95;UBERON:0006601,3.04e-35,95;UBERON:0002020,1.34e-32,34;UBERON:0000073,7.90e-31,54;UBERON:0010371,3.34e-29,73;UBERON:0001049,4.42e-29,52;UBERON:0005068,4.42e-29,52;UBERON:0006241,4.42e-29,52;UBERON:0007135,4.42e-29,52;UBERON:0003056,4.46e-27,49;UBERON:0003528,3.39e-26,29;UBERON:0002791,3.39e-26,29;UBERON:0001893,3.39e-26,29;UBERON:0000955,1.08e-24,47;UBERON:0006238,1.08e-24,47;UBERON:0003080,2.11e-24,40;UBERON:0002616,6.23e-24,46;UBERON:0002780,1.07e-23,39;UBERON:0001890,1.07e-23,39;UBERON:0006240,1.07e-23,39;UBERON:0000956,9.63e-22,21;UBERON:0001869,9.63e-22,21;UBERON:0000203,9.63e-22,21;UBERON:0010314,3.28e-20,92;UBERON:0002619,4.86e-17,17;UBERON:0002021,1.95e-13,10;UBERON:0000411,1.95e-13,10;UBERON:0001950,1.95e-13,10;UBERON:0002410,7.01e-10,9;UBERON:0000010,1.05e-07,11;UBERON:0011216,1.17e-07,194;UBERON:0000025,1.18e-07,114;UBERON:0001948,1.50e-07,5;UBERON:0002315,1.50e-07,5;UBERON:0000369,2.29e-07,5;UBERON:0002435,2.29e-07,5;UBERON:0000204,2.29e-07,5;UBERON:0010082,2.29e-07,5 | |||
|phase1_expression=0.320297694209588,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.680346321208558,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.09012578190223,0,0,0.139986421625363,0,0,0,0,0,0,0,4.45096213891115,3.1739458756322,5.70448263155561,0,0,0,0,0,0,0,3.31806759387129,6.07526722492608,5.25812403378455,10.2834354385369,5.30084498283872,6.00204916153275,6.03826467414889,9.19218786610021,0,1.40456071893706,1.84327839907492,5.67111037239834,5.30628332893976,5.2091337055676,0.279182999001381,0.56276261003168,2.13917546887534,4.41942878210502,4.8406371471695,7.26957838718672,0,0,0,0,0,0,0,0,0,0,0,0,0.704217098883403,0,0,0,0,0,0,0.11418387971906,0,0,0.173485326766136,0.608930956624282,0,0,0,0,0,0,0,0,0,0,0,1.17112318804619,1.04723353406728,0,0,0,0,1.19832511523858,3.66000482254901,7.53926112677186,5.73620256634512,5.8814555185976,3.53239675751252,3.0825839982874,0,0,0,0,0.260240885925407,1.37941262660084,2.70093194708024,2.26057226753573,1.2246569847239,1.5373646434182,1.49922759295566,0,0.215567992932842,0.378212160335639,0.879755620819744,0.219195732427575,0.278047249225598,0.348252166522167,0,0.199034266818493,0,0,0,0,0.234526059981096,0.36012412292203,0,0,0.154267112887378,0,0,0,0,0,0,0,0,0,9.2527577368216,5.35103984372279,0.330418782983798,0,0.213288250535234,0.928946687441754,1.41754207454303,0,0.22237804384487,0.190225626112559,0,0.329397909448022,0,0,0,0,0,0,0.189667900953082,0.456994050438915,0,0.203651327845314,0.193952487167626,0.210407459670956,0.0632365371242573,0,0,0,0,0,0.196558995113203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32643988239339,0,0.169745085775188,0,0,0.238043640886014,0,0,0,0,0,0.172684981865896,0,0,0,0,0,0.963303539926752,0.703270119553219,0,0,2.52406575533005,3.51394869866975,4.95473814785438,1.43381278771531,3.11918143715352,3.39691836946599,2.02405350837447,2.92255857911312,3.55759000151871,1.28528526568723,0,0.178065603667255,0,0,0,0.242780636154981,0,0,0,0,0,0,0.356497378384721,0,0,0,0.340439605753788,0.900305470156551,0.517434735131018,0.643011105094777,1.41872186913819,0.891844088010353,0.658196082408484,1.2178597964584,0,0,0,0,0,0,0,0,0,0.556275906031529,0,1.44470807574256,0.185194527369712,0.188368457004691,0,0,0,0,0,0,1.73984796469624,0.406638934253697,0.540026704109006,0.209088296014469,0.218362563746178,0.539457385539283,0,0,0,0,0,0.299033092087958,0,0,0.129159823477731,0,0.352071715937262,0.2604087696879,0.104859344425711,0,0,0,0.405450430580328,0.102710957164827,0,0,0,0.120195449519969,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.21227026878773,5.9842280745933,6.30185064783336,6.70227411140382,6.16574267793578,6.0431511791176,5.40018000185445,4.95353323546643,4.07828168085784,2.07104124700728,0.830298780673413,2.39414924040619,2.39027048055788,0.972426868273176,0.209613162627982,0.551530525350042,0.888986911206461,0.824140228955577,0,1.26348605881899,2.02783439912192,1.13175804831646,0.37456602987953,0.768301828858431,0.574354689556133,0,0.231768651889711,1.35036454324594,0.412085900803307,1.17759136107518,0.685738504770831,0.70990322463735,1.1921809497366,0.581385666529314,1.12931256498397,0.761531471025089,1.28049581010941,1.05227884575137,0.950628796921032,1.12228454331548,0.711810108745045,0.985044823755635,0.818462086339379,1.23949472948773,0.385813221962283,0.999242311751784,0.701794825336225,0.644613162144895,0.382576664137687,0.220591419119515,0.231867835620421 | |||
|short_description=p4@Nell2 | |||
}} |
Revision as of 11:40, 13 September 2013
Short description: | p4@Nell2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Nell2_5end |
Coexpression cluster: | MCL_coexpression_mm9:13 |
Association with transcript: | 0bp_to_ENSMUST00000023090_5end |
EntrezGene: | Nell2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 8.54e-28 | 33 |
neuronal stem cell | 8.54e-28 | 33 |
neuroblast | 8.54e-28 | 33 |
electrically signaling cell | 8.54e-28 | 33 |
electrically responsive cell | 4.83e-22 | 39 |
electrically active cell | 4.83e-22 | 39 |
neural cell | 2.04e-20 | 43 |
CNS neuron (sensu Vertebrata) | 5.46e-20 | 23 |
neuroblast (sensu Vertebrata) | 5.46e-20 | 23 |
ectodermal cell | 9.83e-20 | 44 |
neurectodermal cell | 9.83e-20 | 44 |
autonomic neuron | 7.01e-10 | 9 |
embryonic cell | 4.62e-09 | 70 |
neuron of cerebral cortex | 8.46e-09 | 6 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.