FFCP PHASE1:Mm9::chr2:105843484..105843497,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=|HGNC=|MCL_coexpression_id=0|UniProt=|association_with_transcript=0bp_to_ENSMUST00000126340,uc008llh.1,uc008lli.1_5end|description=CAGE_peak_1_at_uc008llh.1_5end,CAGE_peak_2_at_ENSMUST00000126340_5end,CAGE_peak_2_at_uc008lli.1_5end|id=chr2:105843484..105843497,+|ontology_enrichment_celltype=CL:0000221!2.68e-12!44;CL:0000133!2.68e-12!44;CL:0002319!9.47e-12!43;CL:0000055!6.54e-10!50;CL:0000540!2.22e-08!33;CL:0000047!2.22e-08!33;CL:0000031!2.22e-08!33;CL:0000404!2.22e-08!33;CL:0000393!3.19e-07!39;CL:0000211!3.19e-07!39;CL:0000117!4.73e-07!23;CL:0000337!4.73e-07!23|ontology_enrichment_celltype_v019_2=CL:0002614,1.39e-09,3;CL:0002453,1.61e-09,8;CL:0000128,2.40e-08,6;CL:0000126,2.40e-08,6;CL:0000127,2.40e-08,6;CL:0002319,1.41e-07,43;CL:0000333,1.52e-07,10;CL:0000095,1.52e-07,10;CL:0000243,1.52e-07,10;CL:0000123,1.52e-07,10;CL:0000125,1.52e-07,10;CL:0000030,1.52e-07,10;CL:0000339,1.52e-07,10;CL:0000221,2.36e-07,44;CL:0000133,2.36e-07,44;CL:0002605,4.31e-07,2;CL:0002604,4.31e-07,2|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!1.53e-22!73;UBERON:0005743!1.53e-22!73;UBERON:0000073!8.21e-22!75;UBERON:0001016!8.21e-22!75;UBERON:0004121!6.44e-21!102;UBERON:0000924!6.44e-21!102;UBERON:0006601!6.44e-21!102;UBERON:0002346!4.48e-20!71;UBERON:0003075!4.48e-20!71;UBERON:0007284!4.48e-20!71;UBERON:0001049!2.89e-17!52;UBERON:0005068!2.89e-17!52;UBERON:0006241!2.89e-17!52;UBERON:0007135!2.89e-17!52;UBERON:0000033!3.84e-16!63;UBERON:0000955!2.68e-15!50;UBERON:0006238!2.68e-15!50;UBERON:0002616!1.28e-14!49;UBERON:0003056!5.71e-12!49;UBERON:0003080!7.54e-11!40;UBERON:0002780!1.11e-10!39;UBERON:0001890!1.11e-10!39;UBERON:0006240!1.11e-10!39;UBERON:0007811!2.68e-10!86;UBERON:0002020!9.75e-10!34;UBERON:0000153!1.02e-09!94;UBERON:0003076!8.90e-08!12;UBERON:0003057!8.90e-08!12;UBERON:0002791!2.19e-07!29;UBERON:0003528!2.19e-07!29;UBERON:0001893!2.19e-07!29|ontology_enrichment_uberon_v019_2=UBERON:0002038,1.39e-09,3;UBERON:0009663,1.39e-09,3;UBERON:0009661,1.39e-09,3;UBERON:0000125,1.39e-09,3;UBERON:0002308,1.39e-09,3;UBERON:0000955,3.60e-09,47;UBERON:0006238,3.60e-09,47;UBERON:0001017,3.75e-09,73;UBERON:0000073,6.44e-09,54;UBERON:0001016,8.28e-09,75;UBERON:0002420,9.79e-09,8;UBERON:0007245,9.79e-09,8;UBERON:0010009,9.79e-09,8;UBERON:0010011,9.79e-09,8;UBERON:0000454,9.79e-09,8;UBERON:0002346,3.66e-08,64;UBERON:0003075,3.66e-08,64;UBERON:0007284,3.66e-08,64;UBERON:0004121,4.43e-08,95;UBERON:0000924,4.43e-08,95;UBERON:0006601,4.43e-08,95;UBERON:0001049,5.60e-08,52;UBERON:0005068,5.60e-08,52;UBERON:0006241,5.60e-08,52;UBERON:0007135,5.60e-08,52;UBERON:0002616,5.82e-08,46;UBERON:0002950,2.77e-07,4;UBERON:0001891,2.77e-07,4;UBERON:0009616,2.77e-07,4;UBERON:0010286,2.77e-07,4;UBERON:0003056,2.83e-07,49;UBERON:0002780,8.17e-07,39;UBERON:0001890,8.17e-07,39;UBERON:0006240,8.17e-07,39;UBERON:0010371,9.27e-07,73|phase1_expression=0.480446541314382,0,0,0,0,0,0,0.129123323441576,0,0,0,0,0,0,0,0.202475267389826,1.39912375625629,0,0,0,12.6714502325094,0,0,0,0,0,0,0.215471232685889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125896817975577,0.101376931219515,0,2.34717403304412,0.65407546914134,2.19686182734472,1.55543919259427,0.419959264876088,1.43752564364972,0,0,0,0,1.43266719969378,0,0.809265843438391,0,0.633831403506179,0.338844532069132,0,0,0,0,0.299600110518405,4.2264013585371,0.207379224616955,0.135005938331691,0.210324961351382,1.42825492201902,0.662605622854841,0.122490799214954,0.287536413054709,0,0,1.65993539510744,0.614426133024974,1.18697658957174,0.731901148819277,1.04182674111352,1.11673199600552,2.8138130501584,1.83357897332172,0.589257170947335,0.996601765593721,0.559198337475902,0,0.151143120213571,1.15945795480671,0,0,0.539703191637817,0,0,1.54488862144927,0,0,0,0.985903938436763,0,0,0,0,0,0,1.7127581957859,0,0.445326417194474,0.173485326766136,0,0.230615497256059,0.60289056221049,1.05829836422134,0,0,0,0,0.161766849947409,0,0,0,0.878342391034642,0.628340120440365,0,0,0,0,0.299581278809645,0.457500602818626,0.125654352112864,0.347648640384553,0.511430914660661,0.62336413367868,0.162241263067758,0.101839363850316,0.124406970610093,0,1.47309299120532,0.130120442962704,0,0,0.452114453507145,0.476255494059295,0.896796041993948,0.187403449119458,1.29351685369508,0.431135985865684,0.378212160335639,0.175951124163949,0.43839146485515,0,0,0,0.199034266818493,0,0,0,0,0,0,0,0,0.462801338662135,0,0,0,0,0,0.0810688095458557,0,0.219550115291051,0,0.420579897128254,0.102904612379284,0,0,0.426576501070468,0.232236671860439,0.257734922644187,0,0,0.190225626112559,0,0,0,0.198956472041151,0,0,0,0,0.189667900953082,0,0,0.610953983535943,0.581857461502877,0.210407459670956,0.252946148497029,0.738050739898011,0.941992367048249,0.493588655687202,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.554259570499814,0.189491411770485,0,0.169745085775188,0,0.502518772325447,0,0,0.315270288212382,0.221464689648775,0,0.327726629431476,0,0.144649058581512,0,0,0.491764273019036,0,0.963303539926752,1.28932855251423,0.163934945376675,0,0.631016438832513,0.780877488593277,0.430846795465598,0,0.445597348164788,0.283076530788832,0.404810701674894,0.584511715822624,0,1.60660658210904,0.283880170416537,0,0,0.824850614862677,0,0,0,0,0,0,0,0.363533729477506,0,0,0,0,2.7235168460303,0.540183282093931,0.517434735131018,0.857348140126369,1.06404140185364,1.07021290561242,1.15184314421485,0,0,0,0,0.32977250588296,0,0.0603129249281559,0,0,0,0.556275906031529,0,0.206386867963223,0.185194527369712,0,0,0,0,0.139951452323658,0,0,0.158167996790568,0,0,0,0,0,0.0826534557253359,0,0,0,25.9298751794728,0.299033092087958,0.165458490457098,0,0.516639293910924,0.506868376472335,0.352071715937262,0.2604087696879,0.314578033277133,10.8712854371703,14.977560325409,0.316011120628178,0.405450430580328,0.205421914329655,0.389762468933385,0.358053391334963,0,0.120195449519969,0,0,0.0762068066549998,0,0,0.0962118416403295,0.116876902181569,0,0,0,0,0.386379188064381,0,0.183151624267265,0.214368379079066,0.501572104035363,0.564751842617067,0,0.572895513439397,0.343706364687375,0.685082519770642,0.755393897389701,0,0.45032120322422,0.453142408984205,0.51776031175182,0.103787347584177,1.19707462020309,0.170733605754134,0.729320151204882,0.209613162627982,0,0.222246727801615,0,0.320919209591815,0.252697211763798,0.25347929989024,0,0.280924522409647,0.384150914429216,0.0574354689556133,0,0.115884325944855,0,0,0.294397840268795,0.685738504770831,0.177475806159338,0.476872379894642,0.145346416632329,0.0941093804153306,0.0846146078916765,0,0,0.407412341537585,0,0.118635018124174,0,0.409231043169689,0.154936841185966,0,0,0,0.214871054048298,0.191288332068843,0,0.463735671240843|short_description=p1@uc008llh.1,p2@ENSMUST00000126340,p2@uc008lli.1}} | ||
|EntrezGene= | |||
|HGNC= | |||
|MCL_coexpression_id=0 | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENSMUST00000126340,uc008llh.1,uc008lli.1_5end | |||
|description=CAGE_peak_1_at_uc008llh.1_5end,CAGE_peak_2_at_ENSMUST00000126340_5end,CAGE_peak_2_at_uc008lli.1_5end | |||
|id=chr2:105843484..105843497,+ | |||
|ontology_enrichment_celltype=CL:0000221!2.68e-12!44;CL:0000133!2.68e-12!44;CL:0002319!9.47e-12!43;CL:0000055!6.54e-10!50;CL:0000540!2.22e-08!33;CL:0000047!2.22e-08!33;CL:0000031!2.22e-08!33;CL:0000404!2.22e-08!33;CL:0000393!3.19e-07!39;CL:0000211!3.19e-07!39;CL:0000117!4.73e-07!23;CL:0000337!4.73e-07!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0002614,1.39e-09,3;CL:0002453,1.61e-09,8;CL:0000128,2.40e-08,6;CL:0000126,2.40e-08,6;CL:0000127,2.40e-08,6;CL:0002319,1.41e-07,43;CL:0000333,1.52e-07,10;CL:0000095,1.52e-07,10;CL:0000243,1.52e-07,10;CL:0000123,1.52e-07,10;CL:0000125,1.52e-07,10;CL:0000030,1.52e-07,10;CL:0000339,1.52e-07,10;CL:0000221,2.36e-07,44;CL:0000133,2.36e-07,44;CL:0002605,4.31e-07,2;CL:0002604,4.31e-07,2 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.53e-22!73;UBERON:0005743!1.53e-22!73;UBERON:0000073!8.21e-22!75;UBERON:0001016!8.21e-22!75;UBERON:0004121!6.44e-21!102;UBERON:0000924!6.44e-21!102;UBERON:0006601!6.44e-21!102;UBERON:0002346!4.48e-20!71;UBERON:0003075!4.48e-20!71;UBERON:0007284!4.48e-20!71;UBERON:0001049!2.89e-17!52;UBERON:0005068!2.89e-17!52;UBERON:0006241!2.89e-17!52;UBERON:0007135!2.89e-17!52;UBERON:0000033!3.84e-16!63;UBERON:0000955!2.68e-15!50;UBERON:0006238!2.68e-15!50;UBERON:0002616!1.28e-14!49;UBERON:0003056!5.71e-12!49;UBERON:0003080!7.54e-11!40;UBERON:0002780!1.11e-10!39;UBERON:0001890!1.11e-10!39;UBERON:0006240!1.11e-10!39;UBERON:0007811!2.68e-10!86;UBERON:0002020!9.75e-10!34;UBERON:0000153!1.02e-09!94;UBERON:0003076!8.90e-08!12;UBERON:0003057!8.90e-08!12;UBERON:0002791!2.19e-07!29;UBERON:0003528!2.19e-07!29;UBERON:0001893!2.19e-07!29 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002038,1.39e-09,3;UBERON:0009663,1.39e-09,3;UBERON:0009661,1.39e-09,3;UBERON:0000125,1.39e-09,3;UBERON:0002308,1.39e-09,3;UBERON:0000955,3.60e-09,47;UBERON:0006238,3.60e-09,47;UBERON:0001017,3.75e-09,73;UBERON:0000073,6.44e-09,54;UBERON:0001016,8.28e-09,75;UBERON:0002420,9.79e-09,8;UBERON:0007245,9.79e-09,8;UBERON:0010009,9.79e-09,8;UBERON:0010011,9.79e-09,8;UBERON:0000454,9.79e-09,8;UBERON:0002346,3.66e-08,64;UBERON:0003075,3.66e-08,64;UBERON:0007284,3.66e-08,64;UBERON:0004121,4.43e-08,95;UBERON:0000924,4.43e-08,95;UBERON:0006601,4.43e-08,95;UBERON:0001049,5.60e-08,52;UBERON:0005068,5.60e-08,52;UBERON:0006241,5.60e-08,52;UBERON:0007135,5.60e-08,52;UBERON:0002616,5.82e-08,46;UBERON:0002950,2.77e-07,4;UBERON:0001891,2.77e-07,4;UBERON:0009616,2.77e-07,4;UBERON:0010286,2.77e-07,4;UBERON:0003056,2.83e-07,49;UBERON:0002780,8.17e-07,39;UBERON:0001890,8.17e-07,39;UBERON:0006240,8.17e-07,39;UBERON:0010371,9.27e-07,73 | |||
|phase1_expression=0.480446541314382,0,0,0,0,0,0,0.129123323441576,0,0,0,0,0,0,0,0.202475267389826,1.39912375625629,0,0,0,12.6714502325094,0,0,0,0,0,0,0.215471232685889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125896817975577,0.101376931219515,0,2.34717403304412,0.65407546914134,2.19686182734472,1.55543919259427,0.419959264876088,1.43752564364972,0,0,0,0,1.43266719969378,0,0.809265843438391,0,0.633831403506179,0.338844532069132,0,0,0,0,0.299600110518405,4.2264013585371,0.207379224616955,0.135005938331691,0.210324961351382,1.42825492201902,0.662605622854841,0.122490799214954,0.287536413054709,0,0,1.65993539510744,0.614426133024974,1.18697658957174,0.731901148819277,1.04182674111352,1.11673199600552,2.8138130501584,1.83357897332172,0.589257170947335,0.996601765593721,0.559198337475902,0,0.151143120213571,1.15945795480671,0,0,0.539703191637817,0,0,1.54488862144927,0,0,0,0.985903938436763,0,0,0,0,0,0,1.7127581957859,0,0.445326417194474,0.173485326766136,0,0.230615497256059,0.60289056221049,1.05829836422134,0,0,0,0,0.161766849947409,0,0,0,0.878342391034642,0.628340120440365,0,0,0,0,0.299581278809645,0.457500602818626,0.125654352112864,0.347648640384553,0.511430914660661,0.62336413367868,0.162241263067758,0.101839363850316,0.124406970610093,0,1.47309299120532,0.130120442962704,0,0,0.452114453507145,0.476255494059295,0.896796041993948,0.187403449119458,1.29351685369508,0.431135985865684,0.378212160335639,0.175951124163949,0.43839146485515,0,0,0,0.199034266818493,0,0,0,0,0,0,0,0,0.462801338662135,0,0,0,0,0,0.0810688095458557,0,0.219550115291051,0,0.420579897128254,0.102904612379284,0,0,0.426576501070468,0.232236671860439,0.257734922644187,0,0,0.190225626112559,0,0,0,0.198956472041151,0,0,0,0,0.189667900953082,0,0,0.610953983535943,0.581857461502877,0.210407459670956,0.252946148497029,0.738050739898011,0.941992367048249,0.493588655687202,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.554259570499814,0.189491411770485,0,0.169745085775188,0,0.502518772325447,0,0,0.315270288212382,0.221464689648775,0,0.327726629431476,0,0.144649058581512,0,0,0.491764273019036,0,0.963303539926752,1.28932855251423,0.163934945376675,0,0.631016438832513,0.780877488593277,0.430846795465598,0,0.445597348164788,0.283076530788832,0.404810701674894,0.584511715822624,0,1.60660658210904,0.283880170416537,0,0,0.824850614862677,0,0,0,0,0,0,0,0.363533729477506,0,0,0,0,2.7235168460303,0.540183282093931,0.517434735131018,0.857348140126369,1.06404140185364,1.07021290561242,1.15184314421485,0,0,0,0,0.32977250588296,0,0.0603129249281559,0,0,0,0.556275906031529,0,0.206386867963223,0.185194527369712,0,0,0,0,0.139951452323658,0,0,0.158167996790568,0,0,0,0,0,0.0826534557253359,0,0,0,25.9298751794728,0.299033092087958,0.165458490457098,0,0.516639293910924,0.506868376472335,0.352071715937262,0.2604087696879,0.314578033277133,10.8712854371703,14.977560325409,0.316011120628178,0.405450430580328,0.205421914329655,0.389762468933385,0.358053391334963,0,0.120195449519969,0,0,0.0762068066549998,0,0,0.0962118416403295,0.116876902181569,0,0,0,0,0.386379188064381,0,0.183151624267265,0.214368379079066,0.501572104035363,0.564751842617067,0,0.572895513439397,0.343706364687375,0.685082519770642,0.755393897389701,0,0.45032120322422,0.453142408984205,0.51776031175182,0.103787347584177,1.19707462020309,0.170733605754134,0.729320151204882,0.209613162627982,0,0.222246727801615,0,0.320919209591815,0.252697211763798,0.25347929989024,0,0.280924522409647,0.384150914429216,0.0574354689556133,0,0.115884325944855,0,0,0.294397840268795,0.685738504770831,0.177475806159338,0.476872379894642,0.145346416632329,0.0941093804153306,0.0846146078916765,0,0,0.407412341537585,0,0.118635018124174,0,0.409231043169689,0.154936841185966,0,0,0,0.214871054048298,0.191288332068843,0,0.463735671240843 | |||
|short_description=p1@uc008llh.1,p2@ENSMUST00000126340,p2@uc008lli.1 | |||
}} |
Revision as of 21:33, 13 September 2013
Short description: | p1@uc008llh.1, p2@ENSMUST00000126340, p2@uc008lli.1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_uc008llh.1_5end, CAGE_peak_2_at_ENSMUST00000126340_5end, CAGE_peak_2_at_uc008lli.1_5end |
Coexpression cluster: | MCL_coexpression_mm9:0 |
Association with transcript: | 0bp_to_ENSMUST00000126340, uc008llh.1, uc008lli.1_5end |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron of the substantia nigra | 1.39e-09 | 3 |
oligodendrocyte precursor cell | 1.61e-09 | 8 |
oligodendrocyte | 2.40e-08 | 6 |
macroglial cell | 2.40e-08 | 6 |
astrocyte | 2.40e-08 | 6 |
neural cell | 1.41e-07 | 43 |
migratory neural crest cell | 1.52e-07 | 10 |
neuron associated cell | 1.52e-07 | 10 |
glial cell (sensu Vertebrata) | 1.52e-07 | 10 |
neuron associated cell (sensu Vertebrata) | 1.52e-07 | 10 |
glial cell | 1.52e-07 | 10 |
glioblast | 1.52e-07 | 10 |
glioblast (sensu Vertebrata) | 1.52e-07 | 10 |
ectodermal cell | 2.36e-07 | 44 |
neurectodermal cell | 2.36e-07 | 44 |
astrocyte of the cerebral cortex | 4.31e-07 | 2 |
astrocyte of the hippocampus | 4.31e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
substantia nigra | 1.39e-09 | 3 |
telencephalic nucleus | 1.39e-09 | 3 |
midbrain nucleus | 1.39e-09 | 3 |
neural nucleus | 1.39e-09 | 3 |
nucleus of brain | 1.39e-09 | 3 |
brain | 3.60e-09 | 47 |
future brain | 3.60e-09 | 47 |
central nervous system | 3.75e-09 | 73 |
regional part of nervous system | 6.44e-09 | 54 |
nervous system | 8.28e-09 | 75 |
basal ganglion | 9.79e-09 | 8 |
nuclear complex of neuraxis | 9.79e-09 | 8 |
aggregate regional part of brain | 9.79e-09 | 8 |
collection of basal ganglia | 9.79e-09 | 8 |
cerebral subcortex | 9.79e-09 | 8 |
neurectoderm | 3.66e-08 | 64 |
neural plate | 3.66e-08 | 64 |
presumptive neural plate | 3.66e-08 | 64 |
ectoderm-derived structure | 4.43e-08 | 95 |
ectoderm | 4.43e-08 | 95 |
presumptive ectoderm | 4.43e-08 | 95 |
neural tube | 5.60e-08 | 52 |
neural rod | 5.60e-08 | 52 |
future spinal cord | 5.60e-08 | 52 |
neural keel | 5.60e-08 | 52 |
regional part of brain | 5.82e-08 | 46 |
regional part of midbrain | 2.77e-07 | 4 |
midbrain | 2.77e-07 | 4 |
presumptive midbrain | 2.77e-07 | 4 |
midbrain neural tube | 2.77e-07 | 4 |
pre-chordal neural plate | 2.83e-07 | 49 |
regional part of forebrain | 8.17e-07 | 39 |
forebrain | 8.17e-07 | 39 |
future forebrain | 8.17e-07 | 39 |
ecto-epithelium | 9.27e-07 | 73 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
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