FFCP PHASE1:Mm9::chr8:35209828..35209864,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=68192|HGNC=|MCL_coexpression_id=3674|UniProt=Q9CQ74|association_with_transcript=-35bp_to_NM_026609,uc009lkp.1_5end|description=CAGE_peak_1_at_Leprotl1_5end|id=chr8:35209828..35209864,-|ontology_enrichment_celltype=CL:0002371!3.97e-14!118;CL:0000055!1.15e-13!50;CL:0000144!3.19e-13!121;CL:0000012!3.19e-13!121;CL:0000548!7.12e-13!115;CL:0000004!7.12e-13!115;CL:0000255!7.12e-13!115;CL:0002319!4.59e-12!43;CL:0000221!2.45e-11!44;CL:0000133!2.45e-11!44;CL:0002321!3.05e-11!70;CL:0000220!3.05e-11!70;CL:0000723!9.36e-11!91;CL:0000048!9.36e-11!91;CL:0000034!2.25e-09!97;CL:0000393!2.81e-09!39;CL:0000211!2.81e-09!39;CL:0000117!5.71e-08!23;CL:0000337!5.71e-08!23;CL:0000540!1.40e-07!33;CL:0000047!1.40e-07!33;CL:0000031!1.40e-07!33;CL:0000404!1.40e-07!33|ontology_enrichment_celltype_v019_2=CL:0002319,4.59e-12,43;CL:0000221,2.45e-11,44;CL:0000133,2.45e-11,44;CL:0002321,3.05e-11,70;CL:0000723,9.36e-11,91;CL:0000048,9.36e-11,91;CL:0000034,2.25e-09,97;CL:0000393,2.81e-09,39;CL:0000211,2.81e-09,39;CL:0000117,5.71e-08,23;CL:0000337,5.71e-08,23;CL:0000540,1.40e-07,33;CL:0000047,1.40e-07,33;CL:0000031,1.40e-07,33;CL:0000404,1.40e-07,33|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!2.96e-16!75;UBERON:0001016!2.96e-16!75;UBERON:0001017!1.72e-15!73;UBERON:0005743!1.72e-15!73;UBERON:0000955!9.44e-12!50;UBERON:0006238!9.44e-12!50;UBERON:0002616!1.45e-11!49;UBERON:0000064!1.82e-11!99;UBERON:0007811!2.27e-11!86;UBERON:0001049!7.15e-11!52;UBERON:0005068!7.15e-11!52;UBERON:0006241!7.15e-11!52;UBERON:0007135!7.15e-11!52;UBERON:0004121!3.61e-10!102;UBERON:0000924!3.61e-10!102;UBERON:0006601!3.61e-10!102;UBERON:0000153!3.54e-09!94;UBERON:0002020!3.90e-09!34;UBERON:0000063!5.64e-09!35;UBERON:0002791!7.23e-09!29;UBERON:0003528!7.23e-09!29;UBERON:0001893!7.23e-09!29;UBERON:0003080!5.49e-08!40;UBERON:0002780!9.57e-08!39;UBERON:0001890!9.57e-08!39;UBERON:0006240!9.57e-08!39;UBERON:0000033!2.39e-07!63;UBERON:0000480!2.73e-07!308;UBERON:0000467!2.73e-07!308|ontology_enrichment_uberon_v019_2=UBERON:0001016,2.96e-16,75;UBERON:0001017,1.72e-15,73;UBERON:0000073,5.50e-12,54;UBERON:0004121,3.33e-11,95;UBERON:0000924,3.33e-11,95;UBERON:0006601,3.33e-11,95;UBERON:0001049,7.15e-11,52;UBERON:0005068,7.15e-11,52;UBERON:0006241,7.15e-11,52;UBERON:0007135,7.15e-11,52;UBERON:0000955,3.10e-10,47;UBERON:0006238,3.10e-10,47;UBERON:0002616,4.72e-10,46;UBERON:0002020,3.90e-09,34;UBERON:0003528,7.23e-09,29;UBERON:0002791,7.23e-09,29;UBERON:0001893,7.23e-09,29;UBERON:0011216,1.13e-08,194;UBERON:0003080,5.49e-08,40;UBERON:0002780,9.57e-08,39;UBERON:0001890,9.57e-08,39;UBERON:0006240,9.57e-08,39;UBERON:0002346,1.00e-07,64;UBERON:0003075,1.00e-07,64;UBERON:0007284,1.00e-07,64|phase1_expression=16.0148847104794,21.6364752736404,35.4899406723838,27.8267074402284,22.0394121176393,23.8388566114883,25.2301651843168,121.375924035082,35.056391815765,22.7042590532334,87.492381763233,70.8376771878587,116.758897813082,132.704170872038,17.9879271380458,13.3633676477285,11.1929900500503,26.3410908074128,20.0187073064379,21.6438722416995,31.4660173558958,26.808556824239,23.7691808116431,43.5179389998066,50.0112232726431,33.3054539186712,41.7839136274303,31.027857506768,61.9476347427779,49.6499355627064,52.7718615359625,23.4961349180064,31.9833689543976,31.6963362030877,12.9983228888074,16.6234645358492,13.271008157054,84.9619210395923,80.4775404859515,49.7347556775108,108.234593797707,114.751641473019,83.9932910743896,30.5929267680653,33.8598950273179,63.3236294957801,88.4102219113284,72.6023770746887,73.8145573987825,90.9931927667646,83.1519344454653,87.6890642626327,13.9259563027921,97.1985270295202,79.9903241959064,88.4972459963658,76.7909619035868,75.2881254725066,56.850925501547,43.9062512795787,49.438849473482,90.4714900624583,105.826080737226,112.937414518816,160.19635073585,107.282497356861,71.6044264138987,56.8643091875901,49.3562554588354,54.8124109626664,58.4703392556842,39.7054868321287,33.3511496836936,56.4682584380938,44.7598349655164,84.5681283681219,103.508928139425,80.5707103317534,78.6465450271967,60.535806068159,46.9331611680362,67.197824801822,74.2626777343673,54.0252105630413,58.5217288985183,35.3554302568401,33.5997166685883,48.2774564687529,56.4160140332221,54.4870948369924,16.5222758559956,27.5335640634044,44.8781080247115,53.9703191637817,66.2771945796623,40.3224198387602,31.8808833699077,59.9914735474763,75.8575133440377,86.214856180523,18.7321748302985,21.815501160434,33.1246811618639,56.8853362522665,83.9985239123511,82.5953161448821,93.5220223277349,39.2792546233566,51.5286388457872,33.1025970114559,17.868988656912,25.5751001782199,25.8289356926786,28.0344111427878,21.9890882343768,29.6573155538034,20.517182321953,33.1132527346598,24.7690954545965,19.4120219936891,18.7715290691335,17.455509112868,65.2371164263428,50.6510778829977,50.8955497556696,47.0040981583808,16.4146720573111,29.9951365496704,16.0108486112061,49.2811203641867,41.632554856495,39.5811209155523,52.3211203778752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| ||
|EntrezGene=68192 | |||
|HGNC= | |||
|MCL_coexpression_id=3674 | |||
|UniProt=Q9CQ74 | |||
|association_with_transcript=-35bp_to_NM_026609,uc009lkp.1_5end | |||
|description=CAGE_peak_1_at_Leprotl1_5end | |||
|id=chr8:35209828..35209864,- | |||
|ontology_enrichment_celltype=CL:0002371!3.97e-14!118;CL:0000055!1.15e-13!50;CL:0000144!3.19e-13!121;CL:0000012!3.19e-13!121;CL:0000548!7.12e-13!115;CL:0000004!7.12e-13!115;CL:0000255!7.12e-13!115;CL:0002319!4.59e-12!43;CL:0000221!2.45e-11!44;CL:0000133!2.45e-11!44;CL:0002321!3.05e-11!70;CL:0000220!3.05e-11!70;CL:0000723!9.36e-11!91;CL:0000048!9.36e-11!91;CL:0000034!2.25e-09!97;CL:0000393!2.81e-09!39;CL:0000211!2.81e-09!39;CL:0000117!5.71e-08!23;CL:0000337!5.71e-08!23;CL:0000540!1.40e-07!33;CL:0000047!1.40e-07!33;CL:0000031!1.40e-07!33;CL:0000404!1.40e-07!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0002319,4.59e-12,43;CL:0000221,2.45e-11,44;CL:0000133,2.45e-11,44;CL:0002321,3.05e-11,70;CL:0000723,9.36e-11,91;CL:0000048,9.36e-11,91;CL:0000034,2.25e-09,97;CL:0000393,2.81e-09,39;CL:0000211,2.81e-09,39;CL:0000117,5.71e-08,23;CL:0000337,5.71e-08,23;CL:0000540,1.40e-07,33;CL:0000047,1.40e-07,33;CL:0000031,1.40e-07,33;CL:0000404,1.40e-07,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!2.96e-16!75;UBERON:0001016!2.96e-16!75;UBERON:0001017!1.72e-15!73;UBERON:0005743!1.72e-15!73;UBERON:0000955!9.44e-12!50;UBERON:0006238!9.44e-12!50;UBERON:0002616!1.45e-11!49;UBERON:0000064!1.82e-11!99;UBERON:0007811!2.27e-11!86;UBERON:0001049!7.15e-11!52;UBERON:0005068!7.15e-11!52;UBERON:0006241!7.15e-11!52;UBERON:0007135!7.15e-11!52;UBERON:0004121!3.61e-10!102;UBERON:0000924!3.61e-10!102;UBERON:0006601!3.61e-10!102;UBERON:0000153!3.54e-09!94;UBERON:0002020!3.90e-09!34;UBERON:0000063!5.64e-09!35;UBERON:0002791!7.23e-09!29;UBERON:0003528!7.23e-09!29;UBERON:0001893!7.23e-09!29;UBERON:0003080!5.49e-08!40;UBERON:0002780!9.57e-08!39;UBERON:0001890!9.57e-08!39;UBERON:0006240!9.57e-08!39;UBERON:0000033!2.39e-07!63;UBERON:0000480!2.73e-07!308;UBERON:0000467!2.73e-07!308 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,2.96e-16,75;UBERON:0001017,1.72e-15,73;UBERON:0000073,5.50e-12,54;UBERON:0004121,3.33e-11,95;UBERON:0000924,3.33e-11,95;UBERON:0006601,3.33e-11,95;UBERON:0001049,7.15e-11,52;UBERON:0005068,7.15e-11,52;UBERON:0006241,7.15e-11,52;UBERON:0007135,7.15e-11,52;UBERON:0000955,3.10e-10,47;UBERON:0006238,3.10e-10,47;UBERON:0002616,4.72e-10,46;UBERON:0002020,3.90e-09,34;UBERON:0003528,7.23e-09,29;UBERON:0002791,7.23e-09,29;UBERON:0001893,7.23e-09,29;UBERON:0011216,1.13e-08,194;UBERON:0003080,5.49e-08,40;UBERON:0002780,9.57e-08,39;UBERON:0001890,9.57e-08,39;UBERON:0006240,9.57e-08,39;UBERON:0002346,1.00e-07,64;UBERON:0003075,1.00e-07,64;UBERON:0007284,1.00e-07,64 | |||
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| |||
|short_description=p1@Leprotl1 | |||
}} |
Revision as of 15:32, 14 September 2013
Short description: | p1@Leprotl1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Leprotl1_5end |
Coexpression cluster: | MCL_coexpression_mm9:3674 |
Association with transcript: | -35bp_to_NM_026609, uc009lkp.1_5end |
EntrezGene: | Leprotl1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 4.59e-12 | 43 |
ectodermal cell | 2.45e-11 | 44 |
neurectodermal cell | 2.45e-11 | 44 |
embryonic cell | 3.05e-11 | 70 |
somatic stem cell | 9.36e-11 | 91 |
multi fate stem cell | 9.36e-11 | 91 |
stem cell | 2.25e-09 | 97 |
electrically responsive cell | 2.81e-09 | 39 |
electrically active cell | 2.81e-09 | 39 |
CNS neuron (sensu Vertebrata) | 5.71e-08 | 23 |
neuroblast (sensu Vertebrata) | 5.71e-08 | 23 |
neuron | 1.40e-07 | 33 |
neuronal stem cell | 1.40e-07 | 33 |
neuroblast | 1.40e-07 | 33 |
electrically signaling cell | 1.40e-07 | 33 |
Ontology term | p-value | n |
---|---|---|
nervous system | 2.96e-16 | 75 |
central nervous system | 1.72e-15 | 73 |
regional part of nervous system | 5.50e-12 | 54 |
ectoderm-derived structure | 3.33e-11 | 95 |
ectoderm | 3.33e-11 | 95 |
presumptive ectoderm | 3.33e-11 | 95 |
neural tube | 7.15e-11 | 52 |
neural rod | 7.15e-11 | 52 |
future spinal cord | 7.15e-11 | 52 |
neural keel | 7.15e-11 | 52 |
brain | 3.10e-10 | 47 |
future brain | 3.10e-10 | 47 |
regional part of brain | 4.72e-10 | 46 |
gray matter | 3.90e-09 | 34 |
brain grey matter | 7.23e-09 | 29 |
regional part of telencephalon | 7.23e-09 | 29 |
telencephalon | 7.23e-09 | 29 |
organ system subdivision | 1.13e-08 | 194 |
anterior neural tube | 5.49e-08 | 40 |
regional part of forebrain | 9.57e-08 | 39 |
forebrain | 9.57e-08 | 39 |
future forebrain | 9.57e-08 | 39 |
neurectoderm | 1.00e-07 | 64 |
neural plate | 1.00e-07 | 64 |
presumptive neural plate | 1.00e-07 | 64 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.