FFCP PHASE1:Mm9::chrX:34442872..34442899,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=77286|HGNC=|MCL_coexpression_id=1|UniProt=Q8BY02|association_with_transcript=0bp_to_ENSMUST00000057093,NM_029891,uc009sxw.1_5end|description=CAGE_peak_1_at_Nkrf_5end|id=chrX:34442872..34442899,-|ontology_enrichment_celltype=CL:0000540!5.49e-16!33;CL:0000047!5.49e-16!33;CL:0000031!5.49e-16!33;CL:0000404!5.49e-16!33;CL:0000117!3.45e-13!23;CL:0000337!3.45e-13!23;CL:0000393!2.34e-12!39;CL:0000211!2.34e-12!39;CL:0002319!1.16e-10!43;CL:0000221!1.24e-10!44;CL:0000133!1.24e-10!44;CL:0000055!6.02e-08!50|ontology_enrichment_celltype_v019_2=CL:0000540,2.56e-20,33;CL:0000047,2.56e-20,33;CL:0000031,2.56e-20,33;CL:0000404,2.56e-20,33;CL:0000117,1.89e-18,23;CL:0000337,1.89e-18,23;CL:0000393,2.08e-15,39;CL:0000211,2.08e-15,39;CL:0002319,6.06e-13,43;CL:0000221,2.10e-12,44;CL:0000133,2.10e-12,44|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!6.88e-25!73;UBERON:0005743!6.88e-25!73;UBERON:0000073!1.37e-24!75;UBERON:0001016!1.37e-24!75;UBERON:0004121!4.02e-21!102;UBERON:0000924!4.02e-21!102;UBERON:0006601!4.02e-21!102;UBERON:0002346!3.41e-20!71;UBERON:0003075!3.41e-20!71;UBERON:0007284!3.41e-20!71;UBERON:0001049!1.00e-18!52;UBERON:0005068!1.00e-18!52;UBERON:0006241!1.00e-18!52;UBERON:0007135!1.00e-18!52;UBERON:0000955!9.70e-18!50;UBERON:0006238!9.70e-18!50;UBERON:0002616!3.90e-17!49;UBERON:0000033!6.48e-17!63;UBERON:0002020!1.37e-16!34;UBERON:0003056!1.76e-14!49;UBERON:0003080!6.15e-14!40;UBERON:0002791!1.03e-13!29;UBERON:0003528!1.03e-13!29;UBERON:0001893!1.03e-13!29;UBERON:0002780!2.87e-13!39;UBERON:0001890!2.87e-13!39;UBERON:0006240!2.87e-13!39;UBERON:0007811!2.08e-12!86;UBERON:0000153!5.63e-12!94;UBERON:0000956!2.58e-09!21;UBERON:0001869!2.58e-09!21;UBERON:0000203!2.58e-09!21;UBERON:0002021!1.20e-07!10;UBERON:0000411!1.20e-07!10;UBERON:0001950!1.20e-07!10;UBERON:0002619!2.05e-07!17|ontology_enrichment_uberon_v019_2=UBERON:0001017,6.92e-32,73;UBERON:0001016,1.91e-30,75;UBERON:0000073,1.96e-27,54;UBERON:0002346,1.40e-25,64;UBERON:0003075,1.40e-25,64;UBERON:0007284,1.40e-25,64;UBERON:0001049,1.80e-25,52;UBERON:0005068,1.80e-25,52;UBERON:0006241,1.80e-25,52;UBERON:0007135,1.80e-25,52;UBERON:0002020,1.24e-24,34;UBERON:0004121,2.57e-24,95;UBERON:0000924,2.57e-24,95;UBERON:0006601,2.57e-24,95;UBERON:0000955,3.85e-21,47;UBERON:0006238,3.85e-21,47;UBERON:0010371,5.13e-21,73;UBERON:0003528,2.09e-20,29;UBERON:0002791,2.09e-20,29;UBERON:0001893,2.09e-20,29;UBERON:0002616,2.67e-20,46;UBERON:0003080,2.58e-18,40;UBERON:0003056,8.04e-18,49;UBERON:0002780,2.32e-17,39;UBERON:0001890,2.32e-17,39;UBERON:0006240,2.32e-17,39;UBERON:0010314,2.64e-14,92;UBERON:0000956,6.10e-14,21;UBERON:0001869,6.10e-14,21;UBERON:0000203,6.10e-14,21;UBERON:0002619,3.74e-11,17;UBERON:0002021,2.10e-10,10;UBERON:0000411,2.10e-10,10;UBERON:0001950,2.10e-10,10;UBERON:0003076,9.81e-08,12;UBERON:0003057,9.81e-08,12;UBERON:0002420,1.07e-07,8;UBERON:0007245,1.07e-07,8;UBERON:0010009,1.07e-07,8;UBERON:0010011,1.07e-07,8;UBERON:0000454,1.07e-07,8|phase1_expression=1.44133962394315,0,0,0,0,0,0,1.16210991097419,1.54867594366833,1.87251621057595,0.34243593645101,0.398860794976682,0.342401459862411,0.174840804837995,0.666219523631325,0.202475267389826,0,0.630924330716475,0.548457734422955,0.42438965179803,5.27268398936633,0.297872853602656,0.261199789138935,0,0.45881856213434,0,0,0,0,0.252030129759931,0,0,0,0,0,0.166234645358492,0,0,0,0,0,0,0,0.377690453926732,0.405507724878058,0,0,0.218025156380447,0,0,0.139986421625363,0,1.8456086666351,1.45072428402269,1.34437519656986,0.257259436035947,0,0,5.26022798234954,5.28990979272033,6.33831403506179,0,0,0,0,0,0.299600110518405,0.384218305321555,3.11068836925433,3.10513658162888,5.04779907243317,15.996455126613,11.7060326704355,3.42974237801871,1.72521847832825,2.75765635983006,45.1475112097494,30.9003358166154,40.398518246392,5.53922408466814,5.12330804173494,10.4182674111352,31.547678887156,28.7008931116157,26.7396933609418,27.1058298635774,23.3489556510529,11.5567656411686,0.227178579999552,0.529000920747499,0,0,0,0,0,0,1.82577746171277,0.170430322578058,0,0,0.422530259330042,0,0,0,0,0,0,0.22836775943812,1.8125651855302,1.63286352971307,0.693941307064543,1.21786191324856,0.461230994512117,0.60289056221049,0.352766121407114,0,0,1.15679485535929,0,0.161766849947409,0,0,0,17.8596286177044,10.6817820474862,0,0.239630249011841,0,0.254140454146129,44.9371918214468,22.8750301409313,6.40837195775608,36.3292829201858,23.7815375317207,40.7264567336738,29.2034273521964,0.101839363850316,0.746441823660558,2.27450482590307,1.89397670297827,0,0.229902104433473,0.540186389416048,0.753524089178575,1.02054748726992,1.7935920839879,1.96773621575431,5.17406741478031,0,0.189106080167819,0.351902248327898,0.43839146485515,0.278047249225598,0.348252166522167,0.411564272815887,0,0,0.257347907114715,0,0,0.234526059981096,0.180062061461015,0,0,0.154267112887378,0,0,0.116765342367169,0.16455984991348,0.32833492815819,0.486412857275134,0,0.439100230582101,0,30.2817525932343,8.026559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| ||
|EntrezGene=77286 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|UniProt=Q8BY02 | |||
|association_with_transcript=0bp_to_ENSMUST00000057093,NM_029891,uc009sxw.1_5end | |||
|description=CAGE_peak_1_at_Nkrf_5end | |||
|id=chrX:34442872..34442899,- | |||
|ontology_enrichment_celltype=CL:0000540!5.49e-16!33;CL:0000047!5.49e-16!33;CL:0000031!5.49e-16!33;CL:0000404!5.49e-16!33;CL:0000117!3.45e-13!23;CL:0000337!3.45e-13!23;CL:0000393!2.34e-12!39;CL:0000211!2.34e-12!39;CL:0002319!1.16e-10!43;CL:0000221!1.24e-10!44;CL:0000133!1.24e-10!44;CL:0000055!6.02e-08!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,2.56e-20,33;CL:0000047,2.56e-20,33;CL:0000031,2.56e-20,33;CL:0000404,2.56e-20,33;CL:0000117,1.89e-18,23;CL:0000337,1.89e-18,23;CL:0000393,2.08e-15,39;CL:0000211,2.08e-15,39;CL:0002319,6.06e-13,43;CL:0000221,2.10e-12,44;CL:0000133,2.10e-12,44 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!6.88e-25!73;UBERON:0005743!6.88e-25!73;UBERON:0000073!1.37e-24!75;UBERON:0001016!1.37e-24!75;UBERON:0004121!4.02e-21!102;UBERON:0000924!4.02e-21!102;UBERON:0006601!4.02e-21!102;UBERON:0002346!3.41e-20!71;UBERON:0003075!3.41e-20!71;UBERON:0007284!3.41e-20!71;UBERON:0001049!1.00e-18!52;UBERON:0005068!1.00e-18!52;UBERON:0006241!1.00e-18!52;UBERON:0007135!1.00e-18!52;UBERON:0000955!9.70e-18!50;UBERON:0006238!9.70e-18!50;UBERON:0002616!3.90e-17!49;UBERON:0000033!6.48e-17!63;UBERON:0002020!1.37e-16!34;UBERON:0003056!1.76e-14!49;UBERON:0003080!6.15e-14!40;UBERON:0002791!1.03e-13!29;UBERON:0003528!1.03e-13!29;UBERON:0001893!1.03e-13!29;UBERON:0002780!2.87e-13!39;UBERON:0001890!2.87e-13!39;UBERON:0006240!2.87e-13!39;UBERON:0007811!2.08e-12!86;UBERON:0000153!5.63e-12!94;UBERON:0000956!2.58e-09!21;UBERON:0001869!2.58e-09!21;UBERON:0000203!2.58e-09!21;UBERON:0002021!1.20e-07!10;UBERON:0000411!1.20e-07!10;UBERON:0001950!1.20e-07!10;UBERON:0002619!2.05e-07!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,6.92e-32,73;UBERON:0001016,1.91e-30,75;UBERON:0000073,1.96e-27,54;UBERON:0002346,1.40e-25,64;UBERON:0003075,1.40e-25,64;UBERON:0007284,1.40e-25,64;UBERON:0001049,1.80e-25,52;UBERON:0005068,1.80e-25,52;UBERON:0006241,1.80e-25,52;UBERON:0007135,1.80e-25,52;UBERON:0002020,1.24e-24,34;UBERON:0004121,2.57e-24,95;UBERON:0000924,2.57e-24,95;UBERON:0006601,2.57e-24,95;UBERON:0000955,3.85e-21,47;UBERON:0006238,3.85e-21,47;UBERON:0010371,5.13e-21,73;UBERON:0003528,2.09e-20,29;UBERON:0002791,2.09e-20,29;UBERON:0001893,2.09e-20,29;UBERON:0002616,2.67e-20,46;UBERON:0003080,2.58e-18,40;UBERON:0003056,8.04e-18,49;UBERON:0002780,2.32e-17,39;UBERON:0001890,2.32e-17,39;UBERON:0006240,2.32e-17,39;UBERON:0010314,2.64e-14,92;UBERON:0000956,6.10e-14,21;UBERON:0001869,6.10e-14,21;UBERON:0000203,6.10e-14,21;UBERON:0002619,3.74e-11,17;UBERON:0002021,2.10e-10,10;UBERON:0000411,2.10e-10,10;UBERON:0001950,2.10e-10,10;UBERON:0003076,9.81e-08,12;UBERON:0003057,9.81e-08,12;UBERON:0002420,1.07e-07,8;UBERON:0007245,1.07e-07,8;UBERON:0010009,1.07e-07,8;UBERON:0010011,1.07e-07,8;UBERON:0000454,1.07e-07,8 | |||
|phase1_expression=1.44133962394315,0,0,0,0,0,0,1.16210991097419,1.54867594366833,1.87251621057595,0.34243593645101,0.398860794976682,0.342401459862411,0.174840804837995,0.666219523631325,0.202475267389826,0,0.630924330716475,0.548457734422955,0.42438965179803,5.27268398936633,0.297872853602656,0.261199789138935,0,0.45881856213434,0,0,0,0,0.252030129759931,0,0,0,0,0,0.166234645358492,0,0,0,0,0,0,0,0.377690453926732,0.405507724878058,0,0,0.218025156380447,0,0,0.139986421625363,0,1.8456086666351,1.45072428402269,1.34437519656986,0.257259436035947,0,0,5.26022798234954,5.28990979272033,6.33831403506179,0,0,0,0,0,0.299600110518405,0.384218305321555,3.11068836925433,3.10513658162888,5.04779907243317,15.996455126613,11.7060326704355,3.42974237801871,1.72521847832825,2.75765635983006,45.1475112097494,30.9003358166154,40.398518246392,5.53922408466814,5.12330804173494,10.4182674111352,31.547678887156,28.7008931116157,26.7396933609418,27.1058298635774,23.3489556510529,11.5567656411686,0.227178579999552,0.529000920747499,0,0,0,0,0,0,1.82577746171277,0.170430322578058,0,0,0.422530259330042,0,0,0,0,0,0,0.22836775943812,1.8125651855302,1.63286352971307,0.693941307064543,1.21786191324856,0.461230994512117,0.60289056221049,0.352766121407114,0,0,1.15679485535929,0,0.161766849947409,0,0,0,17.8596286177044,10.6817820474862,0,0.239630249011841,0,0.254140454146129,44.9371918214468,22.8750301409313,6.40837195775608,36.3292829201858,23.7815375317207,40.7264567336738,29.2034273521964,0.101839363850316,0.746441823660558,2.27450482590307,1.89397670297827,0,0.229902104433473,0.540186389416048,0.753524089178575,1.02054748726992,1.7935920839879,1.96773621575431,5.17406741478031,0,0.189106080167819,0.351902248327898,0.43839146485515,0.278047249225598,0.348252166522167,0.411564272815887,0,0,0.257347907114715,0,0,0.234526059981096,0.180062061461015,0,0,0.154267112887378,0,0,0.116765342367169,0.16455984991348,0.32833492815819,0.486412857275134,0,0.439100230582101,0,30.2817525932343,8.02655976558419,0,0,0,0.232236671860439,0.257734922644187,0.201683524623343,0.444756087689741,0.190225626112559,0,0.329397909448022,0.251335208800269,0,0.38992817423824,0,0.216138049874694,0.199141273254367,0.189667900953082,0.228497025219458,0,0.407302655690628,0,0.140271639780637,0.126473074248515,0,0.156998727841375,0.123397163921801,0.296452627087149,0,0,0,0.202860121388503,0.482354319504834,0,0,0,0,0,0,0,0,0,0,0.184753190166605,0,0.325929952884052,0.169745085775188,0.234690248288502,0,0.238043640886014,0,0.788175720530955,0.44292937929755,0.318909537314974,0.163863314715738,0.863424909329478,0.578596234326046,0,0,0,0.551873492609465,52.1789417460324,45.1264993379982,0,0,0.94652465824877,2.34263246577983,3.87762115919038,1.43381278771531,2.00518806674155,2.26461224631066,0.809621403349789,3.79932615284705,4.74345333535828,24.0990987316355,0.141940085208269,0.178065603667255,0,0.164970122972535,0,0,0,0,0,0,0.258428293168221,0.363533729477506,0.356497378384721,0,0,0,1.36175842301515,0.540183282093931,0,0.428674070063185,0.532020700926821,0.891844088010353,1.31639216481697,0,0,0,1.10264199027481,0.16488625294148,0,0.301564624640779,0.119372344003136,0.492422699235184,0,53.4024869790268,0,0,0.185194527369712,0.565105371014073,0.410082683163076,0,0.339956859987711,0.139951452323658,0.552799895217695,0,0.158167996790568,0.406638934253697,0.324016022465404,0.209088296014469,0.218362563746178,0.404593039154462,0.330613822901344,0,0.388844919875379,0,0.56369293868419,0,0.330916980914195,0,0.129159823477731,0.168956125490778,0.117357238645754,0.2604087696879,0.314578033277133,0.483168241652012,0.576060012515731,1.26404448251271,0,0,0.25984164595559,0.358053391334963,0,0.240390899039938,0.147689527174577,0.201932899896295,0.457240839929999,0.403304740547362,0.38983152295901,0.384847366561318,0.350630706544707,0,0.443971906748129,0.0897138566094757,0.167884616364078,0.772758376128762,0.187682475451182,0,0,1.00314420807073,27.1080884456192,24.3972375348804,30.9363577257274,22.3409137046794,32.8839609489908,24.9279986138601,23.6257875081132,34.674732648265,44.8610984894363,38.3142630696347,1.764384908931,1.19707462020309,1.70733605754134,0.486213434136588,1.67690530102386,2.20612210140017,2.44471400581777,1.44224540067226,2.88827288632634,2.52697211763797,2.28131369901216,0.943131706930381,1.21733959710847,2.17685518176556,1.78049953762401,1.90517476513229,1.62238056322798,2.12200142510076,1.64834360321323,1.47198920134397,1.37147700954166,2.12970967391205,2.38436189947321,1.74415699958794,1.69396884747595,2.28459441307527,2.0122077016005,3.6829759601298,1.49384525230448,1.68342681497322,1.54225523561426,1.28055827088233,1.63692417267876,1.85924209423159,1.54325288784913,3.2475375131933,1.16965804222704,1.07435527024149,0.765153328275374,1.76473135295612,2.78241402744506 | |||
|short_description=p1@Nkrf | |||
}} |
Revision as of 19:46, 14 September 2013
Short description: | p1@Nkrf |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Nkrf_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 0bp_to_ENSMUST00000057093, NM_029891, uc009sxw.1_5end |
EntrezGene: | Nkrf |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 2.56e-20 | 33 |
neuronal stem cell | 2.56e-20 | 33 |
neuroblast | 2.56e-20 | 33 |
electrically signaling cell | 2.56e-20 | 33 |
CNS neuron (sensu Vertebrata) | 1.89e-18 | 23 |
neuroblast (sensu Vertebrata) | 1.89e-18 | 23 |
electrically responsive cell | 2.08e-15 | 39 |
electrically active cell | 2.08e-15 | 39 |
neural cell | 6.06e-13 | 43 |
ectodermal cell | 2.10e-12 | 44 |
neurectodermal cell | 2.10e-12 | 44 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.