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MCL coexpression mm9:39: Difference between revisions

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{{MCL_coexpression_mm9
{
 

Latest revision as of 14:33, 17 September 2013


Phase1 CAGE Peaks

 Short description
Mm9::chr10:106708883..106708906,+p3@Lin7a
Mm9::chr10:106708924..106708944,+p1@Lin7a
Mm9::chr10:10800890..10800930,-p2@Grm1
Mm9::chr10:10802085..10802170,-p1@Grm1
Mm9::chr10:113856579..113856581,-p@chr10:113856579..113856581
-
Mm9::chr10:113953847..113953849,-p@chr10:113953847..113953849
-
Mm9::chr10:114239354..114239378,-p4@Trhde
Mm9::chr10:21602106..21602160,+p4@Sgk1
Mm9::chr10:21603978..21603981,+p@chr10:21603978..21603981
+
Mm9::chr10:21606428..21606451,+p@chr10:21606428..21606451
+
Mm9::chr10:48951696..48951703,-p@chr10:48951696..48951703
-
Mm9::chr10:5151669..5151681,+p12@Syne1
Mm9::chr10:63500650..63500682,-p@chr10:63500650..63500682
-
Mm9::chr10:63518495..63518506,-p@chr10:63518495..63518506
-
Mm9::chr10:63535625..63535646,-p@chr10:63535625..63535646
-
Mm9::chr10:63552941..63552958,-p3@Lrrtm3
Mm9::chr10:63552989..63553010,-p2@Lrrtm3
Mm9::chr10:63553013..63553045,-p1@Lrrtm3
Mm9::chr10:80306752..80306766,-p2@Lingo3
Mm9::chr10:80306770..80306812,-p1@Lingo3
Mm9::chr10:8238273..8238289,-p3@Ust
Mm9::chr10:89335753..89335803,+p5@Anks1b
Mm9::chr10:89335986..89335997,+p23@Anks1b
Mm9::chr10:89336227..89336237,+p16@Anks1b
Mm9::chr10:89336242..89336261,+p4@Anks1b
Mm9::chr10:89379118..89379130,+p@chr10:89379118..89379130
+
Mm9::chr10:89827943..89827983,+p@chr10:89827943..89827983
+
Mm9::chr10:90370447..90370450,+p@chr10:90370447..90370450
+
Mm9::chr11:102622716..102622762,+p2@Adam11
Mm9::chr11:102622877..102622934,+p1@Adam11
Mm9::chr11:118770782..118770793,-p5@Rbfox3
Mm9::chr11:118770801..118770889,-p1@Rbfox3
Mm9::chr11:118770953..118771053,-p2@Rbfox3
Mm9::chr11:118771109..118771120,-p10@Rbfox3
Mm9::chr11:118771162..118771177,-p6@Rbfox3
Mm9::chr11:119409058..119409073,-p1@Nptx1
Mm9::chr11:29925915..29925955,-p1@Eml6
Mm9::chr11:42233231..42233287,+p3@Gabrb2
Mm9::chr11:42234260..42234281,+p8@Gabrb2
Mm9::chr11:42280498..42280501,+p@chr11:42280498..42280501
+
Mm9::chr11:54117550..54117561,+p6@Acsl6
Mm9::chr11:61267359..61267368,-p6@Rnf112
Mm9::chr11:61267392..61267412,-p3@Rnf112
Mm9::chr11:6963426..6963499,+p1@Adcy1
Mm9::chr11:6963735..6963761,+p@chr11:6963735..6963761
+
Mm9::chr11:75345666..75345689,+p4@Slc43a2
Mm9::chr11:92959351..92959370,+p6@Car10
Mm9::chr11:92960598..92960645,+p2@Car10
Mm9::chr11:92961503..92961515,+p@chr11:92961503..92961515
+
Mm9::chr11:93181596..93181599,+p@chr11:93181596..93181599
+
Mm9::chr11:93239814..93239819,+p@chr11:93239814..93239819
+
Mm9::chr11:93262918..93262957,+p@chr11:93262918..93262957
+
Mm9::chr11:93282739..93282744,+p@chr11:93282739..93282744
+
Mm9::chr12:41172735..41172746,+p3@Dock4
Mm9::chr12:53847695..53847699,+p@chr12:53847695..53847699
+
Mm9::chr12:71008924..71008927,+p@chr12:71008924..71008927
+
Mm9::chr12:88367408..88367472,+p1@Tmem63c
Mm9::chr12:88367520..88367533,+p4@Tmem63c
Mm9::chr12:91073275..91073276,+p@chr12:91073275..91073276
+
Mm9::chr12:91109151..91109160,+p@chr12:91109151..91109160
+
Mm9::chr13:19049801..19049811,+p@chr13:19049801..19049811
+
Mm9::chr13:52626058..52626176,-p1@Diras2
Mm9::chr13:54398153..54398169,+p@chr13:54398153..54398169
+
Mm9::chr13:57900089..57900095,-p@chr13:57900089..57900095
-
Mm9::chr13:76521526..76521537,+p8@Mctp1
Mm9::chr13:76521581..76521598,+p2@Mctp1
Mm9::chr13:76521644..76521657,+p3@Mctp1
Mm9::chr14:109241248..109241251,-p@chr14:109241248..109241251
-
Mm9::chr14:124494312..124494317,-p@chr14:124494312..124494317
-
Mm9::chr14:124956764..124956777,-p@chr14:124956764..124956777
-
Mm9::chr14:124993393..124993400,-p@chr14:124993393..124993400
-
Mm9::chr14:125062868..125062883,-p@chr14:125062868..125062883
-
Mm9::chr14:125076311..125076332,-p2@Fgf14
Mm9::chr14:125076721..125076762,-p1@Fgf14
Mm9::chr14:125076772..125076783,-p10@Fgf14
Mm9::chr14:58691117..58691142,+p2@Fgf9
Mm9::chr14:65035878..65035884,-p9@Msra
Mm9::chr14:65206851..65206895,+p1@A930011O12Rik
p1@Mir3078
Mm9::chr14:93624136..93624139,-p@chr14:93624136..93624139
-
Mm9::chr15:22966152..22966163,+p6@Cdh18
Mm9::chr15:22966175..22966196,+p2@Cdh18
Mm9::chr15:22966204..22966247,+p1@Cdh18
Mm9::chr15:22968133..22968141,+p@chr15:22968133..22968141
+
Mm9::chr15:30268210..30268213,+p@chr15:30268210..30268213
+
Mm9::chr15:39223399..39223444,+p2@Rims2
Mm9::chr15:39223446..39223453,+p20@Rims2
Mm9::chr15:4325462..4325511,+p3@Plcxd3
Mm9::chr15:4325626..4325656,+p1@Plcxd3
Mm9::chr15:4325658..4325679,+p4@Plcxd3
Mm9::chr15:44579943..44579954,-p10@Sybu
Mm9::chr15:44579968..44579988,-p3@Sybu
Mm9::chr15:71558163..71558174,-p7@Fam135b
Mm9::chr15:71558654..71558674,-p2@Fam135b
Mm9::chr15:71558712..71558723,-p6@Fam135b
Mm9::chr15:72636855..72636876,-p@chr15:72636855..72636876
-
Mm9::chr15:76356879..76356882,+p@chr15:76356879..76356882
+
Mm9::chr15:77950593..77950614,-p4@Cacng2
Mm9::chr15:8660444..8660498,-p1@Slc1a3
Mm9::chr15:92074082..92074085,+p@chr15:92074082..92074085
+
Mm9::chr16:17489693..17489720,+p2@Aifm3
Mm9::chr16:28683680..28683682,-p@chr16:28683680..28683682
-
Mm9::chr16:41556966..41556971,+p@chr16:41556966..41556971
+
Mm9::chr16:41564841..41564846,+p@chr16:41564841..41564846
+
Mm9::chr16:41681079..41681084,+p@chr16:41681079..41681084
+
Mm9::chr16:41801966..41801967,+p@chr16:41801966..41801967
+
Mm9::chr16:41830646..41830649,+p@chr16:41830646..41830649
+
Mm9::chr16:41974854..41974870,+p@chr16:41974854..41974870
+
Mm9::chr16:41988564..41988582,+p@chr16:41988564..41988582
+
Mm9::chr16:42149301..42149305,+p@chr16:42149301..42149305
+
Mm9::chr16:42291085..42291090,-p@chr16:42291085..42291090
-
Mm9::chr16:6348794..6348815,+p9@Rbfox1
Mm9::chr16:6348825..6348863,+p7@Rbfox1
Mm9::chr16:6349114..6349188,+p1@Rbfox1
Mm9::chr16:6349212..6349238,+p3@Rbfox1
Mm9::chr16:6503270..6503276,+p@chr16:6503270..6503276
+
Mm9::chr16:6518059..6518070,+p@chr16:6518059..6518070
+
Mm9::chr16:6523670..6523680,+p@chr16:6523670..6523680
+
Mm9::chr16:6816209..6816225,+p@chr16:6816209..6816225
+
Mm9::chr16:6824861..6824865,+p@chr16:6824861..6824865
+
Mm9::chr16:7278282..7278318,+p@chr16:7278282..7278318
+
Mm9::chr17:27795440..27795444,+p@chr17:27795440..27795444
+
Mm9::chr17:42453612..42453632,+p@chr17:42453612..42453632
+
Mm9::chr17:42572753..42572757,+p@chr17:42572753..42572757
+
Mm9::chr17:42645375..42645379,+p@chr17:42645375..42645379
+
Mm9::chr17:81343321..81343344,+p@chr17:81343321..81343344
+
Mm9::chr17:81343951..81343984,+p1@Tmem178
Mm9::chr17:81343990..81344011,+p2@Tmem178
Mm9::chr17:81395433..81395437,+p@chr17:81395433..81395437
+
Mm9::chr17:81397235..81397239,+p@chr17:81397235..81397239
+
Mm9::chr17:86567158..86567165,+p6@Prkce
Mm9::chr17:8718039..8718055,+p7@Pde10a
Mm9::chr17:8718062..8718104,+p3@Pde10a
Mm9::chr17:88197395..88197430,-p1@Kcnk12
Mm9::chr17:90435619..90435630,-p@chr17:90435619..90435630
-
Mm9::chr17:90577908..90577913,-p@chr17:90577908..90577913
-
Mm9::chr17:90848046..90848053,-p@chr17:90848046..90848053
-
Mm9::chr17:90998675..90998679,-p@chr17:90998675..90998679
-
Mm9::chr17:91006411..91006423,-p@chr17:91006411..91006423
-
Mm9::chr17:91006453..91006458,-p@chr17:91006453..91006458
-
Mm9::chr17:91057385..91057392,-p@chr17:91057385..91057392
-
Mm9::chr17:91189258..91189261,-p@chr17:91189258..91189261
-
Mm9::chr17:91197462..91197466,-p@chr17:91197462..91197466
-
Mm9::chr17:91464538..91464541,-p@chr17:91464538..91464541
-
Mm9::chr17:91492163..91492198,-p3@Nrxn1
Mm9::chr18:23468681..23468703,+p8@Dtna
Mm9::chr18:33098609..33098621,+p6@Camk4
Mm9::chr18:43794442..43794446,-p@chr18:43794442..43794446
-
Mm9::chr18:77424554..77424618,+p1@St8sia5
Mm9::chr18:77424798..77424817,+p3@St8sia5
Mm9::chr18:77424826..77424856,+p2@St8sia5
Mm9::chr19:17211234..17211271,+p1@Prune2
Mm9::chr19:22522564..22522578,+p7@Trpm3
Mm9::chr19:22522609..22522635,+p4@Trpm3
Mm9::chr19:22522668..22522686,+p5@Trpm3
Mm9::chr19:23920096..23920099,+p@chr19:23920096..23920099
+
Mm9::chr19:4477119..4477161,-p1@Syt12
Mm9::chr19:4711393..4711414,+p4@Spnb3
Mm9::chr19:4712204..4712218,+p10@Spnb3
Mm9::chr19:47253494..47253520,+p5@Neurl1a
Mm9::chr19:47253528..47253569,+p3@Neurl1a
Mm9::chr19:47253871..47253902,+p@chr19:47253871..47253902
+
Mm9::chr19:57389216..57389233,-p17@Ablim1
Mm9::chr19:57389292..57389305,-p16@Ablim1
Mm9::chr19:6497587..6497666,+p1@Nrxn2
Mm9::chr1:101669006..101669015,+p2@Cntnap5b
Mm9::chr1:111879854..111879880,+p1@Cdh7
Mm9::chr1:125941788..125941812,-p3@Dpp10
Mm9::chr1:129574322..129574375,-p1@Tmem163
Mm9::chr1:136241234..136241306,-p@chr1:136241234..136241306
-
Mm9::chr1:175297769..175297787,-p1@Cadm3
Mm9::chr1:177384122..177384127,-p@chr1:177384122..177384127
-
Mm9::chr1:22569373..22569374,-p@chr1:22569373..22569374
-
Mm9::chr1:22812742..22812753,-p6@Rims1
Mm9::chr1:22812833..22812846,-p4@Rims1
Mm9::chr1:25750969..25750974,-p@chr1:25750969..25750974
-
Mm9::chr1:25816578..25816582,-p@chr1:25816578..25816582
-
Mm9::chr1:33944440..33944443,-p@chr1:33944440..33944443
-
Mm9::chr1:64167765..64167777,-p6@Klf7
Mm9::chr1:66514799..66514838,+p2@Unc80
Mm9::chr1:83404633..83404727,-p1@Sphkap
Mm9::chr1:83404734..83404756,-p3@Sphkap
Mm9::chr2:129419158..129419172,+p9@Sirpa
Mm9::chr2:136549510..136549514,+p@chr2:136549510..136549514
+
Mm9::chr2:178030043..178030048,+p@chr2:178030043..178030048
+
Mm9::chr2:21430710..21430712,+p@chr2:21430710..21430712
+
Mm9::chr2:25733367..25733403,+p1@Kcnt1
Mm9::chr2:25733407..25733418,+p3@Kcnt1
Mm9::chr2:32174915..32174919,-p@chr2:32174915..32174919
-
Mm9::chr2:32643940..32643963,-p@chr2:32643940..32643963
-
Mm9::chr2:32941724..32941735,-p9@Garnl3
Mm9::chr2:49477391..49477394,+p@chr2:49477391..49477394
+
Mm9::chr2:52386157..52386160,-p@chr2:52386157..52386160
-
Mm9::chr2:52531638..52531665,-p3@Cacnb4
Mm9::chr2:65458886..65458891,+p7@Scn2a1
Mm9::chr2:71819117..71819128,+p11@Rapgef4
Mm9::chr2:71847452..71847456,+p@chr2:71847452..71847456
+
Mm9::chr2:91803861..91803870,-p9@Dgkz
Mm9::chr2:91898866..91898886,+p@chr2:91898866..91898886
+
Mm9::chr2:96674935..96674937,+p@chr2:96674935..96674937
+
Mm9::chr3:114606980..114607060,+p1@Olfm3
Mm9::chr3:114607184..114607209,+p3@Olfm3
Mm9::chr3:114607386..114607398,+p5@Olfm3
Mm9::chr3:123393659..123393718,-p1@Ndst3
Mm9::chr3:13471747..13471758,+p8@Ralyl
Mm9::chr3:13472023..13472030,+p7@Ralyl
Mm9::chr3:13510011..13510016,+p@chr3:13510011..13510016
+
Mm9::chr3:13525946..13525947,+p@chr3:13525946..13525947
+
Mm9::chr3:13748927..13748930,+p@chr3:13748927..13748930
+
Mm9::chr3:13833436..13833445,+p@chr3:13833436..13833445
+
Mm9::chr3:156224914..156224957,+p3@Negr1
Mm9::chr3:156225749..156225760,+p@chr3:156225749..156225760
+
Mm9::chr3:156309597..156309600,+p@chr3:156309597..156309600
+
Mm9::chr3:156366869..156366881,+p@chr3:156366869..156366881
+
Mm9::chr3:156403725..156403728,+p@chr3:156403725..156403728
+
Mm9::chr3:36589040..36589094,-p1@Trpc3
Mm9::chr3:68376457..68376462,+p10@Schip1
p11@Iqcj-schip1
Mm9::chr3:84756445..84756460,+p@chr3:84756445..84756460
+
Mm9::chr3:95999351..95999359,+p@chr3:95999351..95999359
+
Mm9::chr3:97692551..97692570,-p@chr3:97692551..97692570
-
Mm9::chr4:101760220..101760299,+p6@Pde4b
Mm9::chr4:101897495..101897500,+p@chr4:101897495..101897500
+
Mm9::chr4:154772090..154772106,-p4@Gabrd
Mm9::chr4:154772120..154772137,-p3@Gabrd
Mm9::chr4:154772146..154772164,-p2@Gabrd
Mm9::chr4:154772168..154772189,-p1@Gabrd
Mm9::chr4:154772274..154772306,+p@chr4:154772274..154772306
+
Mm9::chr4:24893575..24893649,+p1@ENSMUST00000124792
Mm9::chr4:34011896..34011965,+p2@Cnr1
Mm9::chr4:34011966..34011987,+p3@Cnr1
Mm9::chr4:57003178..57003201,-p2@6430704M03Rik
Mm9::chr4:66065546..66065561,-p3@Astn2
Mm9::chr5:112951607..112951609,-p@chr5:112951607..112951609
-
Mm9::chr5:113919755..113919780,+p1@ENSMUST00000138757
Mm9::chr5:114541274..114541296,-p4@Svop
Mm9::chr5:117864816..117864832,+p3@Ksr2
Mm9::chr5:124053684..124053715,-p2@Clip1
Mm9::chr5:136338912..136338924,+p@chr5:136338912..136338924
+
Mm9::chr5:14514952..14514991,+p1@Pclo
Mm9::chr5:14515002..14515018,+p3@Pclo
Mm9::chr5:14521603..14521615,+p@chr5:14521603..14521615
+
Mm9::chr5:148768886..148768933,+p4@Mtus2
Mm9::chr5:27399189..27399213,+p@chr5:27399189..27399213
+
Mm9::chr5:27437921..27437935,+p@chr5:27437921..27437935
+
Mm9::chr5:34630935..34630954,-p5@Zfyve28
Mm9::chr5:34630967..34631021,-p2@Zfyve28
Mm9::chr5:34631024..34631048,-p3@Zfyve28
Mm9::chr5:34631056..34631118,-p1@Zfyve28
Mm9::chr5:49178163..49178164,-p@chr5:49178163..49178164
-
Mm9::chr5:49204754..49204765,-p@chr5:49204754..49204765
-
Mm9::chr5:49257361..49257368,-p@chr5:49257361..49257368
-
Mm9::chr5:49305744..49305747,-p@chr5:49305744..49305747
-
Mm9::chr5:49550611..49550615,-p@chr5:49550611..49550615
-
Mm9::chr5:49682982..49682985,-p@chr5:49682982..49682985
-
Mm9::chr5:49726183..49726187,-p@chr5:49726183..49726187
-
Mm9::chr5:49732726..49732730,-p@chr5:49732726..49732730
-
Mm9::chr5:49888440..49888442,-p@chr5:49888440..49888442
-
Mm9::chr5:49901479..49901482,-p@chr5:49901479..49901482
-
Mm9::chr5:49916029..49916044,-p3@Kcnip4
Mm9::chr5:8353481..8353487,-p@chr5:8353481..8353487
-
Mm9::chr6:103461393..103461402,+p12@Chl1
Mm9::chr6:104443043..104443105,+p2@Cntn6
Mm9::chr6:104443155..104443210,+p1@Cntn6
Mm9::chr6:104732724..104732728,+p@chr6:104732724..104732728
+
Mm9::chr6:113929999..113930000,-p@chr6:113929999..113930000
-
Mm9::chr6:118008203..118008214,+p@chr6:118008203..118008214
+
Mm9::chr6:127719445..127719474,-p4@Prmt8
Mm9::chr6:21164821..21164859,+p@chr6:21164821..21164859
+
Mm9::chr6:21164866..21164907,+p@chr6:21164866..21164907
+
Mm9::chr6:21262145..21262165,+p@chr6:21262145..21262165
+
Mm9::chr6:21262206..21262219,+p@chr6:21262206..21262219
+
Mm9::chr6:21294535..21294539,+p@chr6:21294535..21294539
+
Mm9::chr6:21334655..21334660,+p@chr6:21334655..21334660
+
Mm9::chr6:23789322..23789333,-p5@Cadps2
Mm9::chr6:28931490..28931526,+p1@ENSMUST00000164104
Mm9::chr6:45991060..45991063,+p@chr6:45991060..45991063
+
Mm9::chr6:62002077..62002081,+p@chr6:62002077..62002081
+
Mm9::chr6:62059090..62059095,+p@chr6:62059090..62059095
+
Mm9::chr6:62069530..62069535,+p@chr6:62069530..62069535
+
Mm9::chr6:62115957..62115961,+p@chr6:62115957..62115961
+
Mm9::chr6:63503116..63503123,+p@chr6:63503116..63503123
+
Mm9::chr6:63696557..63696560,+p@chr6:63696557..63696560
+
Mm9::chr6:90760156..90760213,-p8@Iqsec1
Mm9::chr7:106728085..106728114,+p@chr7:106728085..106728114
+
Mm9::chr7:106728137..106728154,+p@chr7:106728137..106728154
+
Mm9::chr7:129432214..129432235,+p3@Prkcb
Mm9::chr7:129432824..129432861,+p2@Prkcb
Mm9::chr7:134164655..134164666,-p3@Prrt2
Mm9::chr7:134164680..134164703,-p2@Prrt2
Mm9::chr7:151361533..151361551,+p7@Shank2
Mm9::chr7:151361585..151361607,+p4@Shank2
Mm9::chr7:28392777..28392823,+p7@Akt2
Mm9::chr7:3303697..3303710,+p3@Prkcc
Mm9::chr7:3303769..3303780,+p2@Prkcc
Mm9::chr7:3303827..3303834,+p4@Prkcc
Mm9::chr7:3330862..3330875,+p@chr7:3330862..3330875
+
Mm9::chr7:67129678..67129682,-p@chr7:67129678..67129682
-
Mm9::chr7:69127234..69127250,-p1@Mir344g
Mm9::chr7:85577482..85577486,-p@chr7:85577482..85577486
-
Mm9::chr7:85723194..85723286,-p1@Ntrk3
Mm9::chr7:85723848..85723873,-p@chr7:85723848..85723873
-
Mm9::chr7:99383450..99383480,+p7@Dlg2
Mm9::chr8:107064700..107064716,+p1@Car7
Mm9::chr8:107064722..107064735,+p4@Car7
Mm9::chr8:115093921..115093939,+p2@Cntnap4
Mm9::chr8:115093943..115093960,+p1@Cntnap4
Mm9::chr8:15011267..15011301,+p2@Kbtbd11
Mm9::chr8:56071303..56071309,+p@chr8:56071303..56071309
+
Mm9::chr8:86938282..86938374,+p@chr8:86938282..86938374
+
Mm9::chr8:86938639..86938650,+p@chr8:86938639..86938650
+
Mm9::chr8:86939387..86939397,+p12@Cacna1a
Mm9::chr8:87139382..87139398,+p@chr8:87139382..87139398
+
Mm9::chr9:108004261..108004265,-p@chr9:108004261..108004265
-
Mm9::chr9:108037727..108037740,-p@chr9:108037727..108037740
-
Mm9::chr9:108063815..108063816,-p@chr9:108063815..108063816
-
Mm9::chr9:29175816..29175819,-p@chr9:29175816..29175819
-
Mm9::chr9:29219432..29219459,-p8@Ntm
Mm9::chr9:34296372..34296392,+p3@Kirrel3
Mm9::chr9:34455148..34455156,+p@chr9:34455148..34455156
+
Mm9::chr9:34494379..34494384,+p@chr9:34494379..34494384
+
Mm9::chr9:40338876..40338891,-p23@Gramd1b
Mm9::chr9:41932194..41932225,-p1@Sorl1
Mm9::chr9:41932236..41932247,-p3@Sorl1
Mm9::chr9:68501522..68501538,+p4@Rora
Mm9::chr9:8134351..8134364,-p2@AK129341
Mm9::chr9:97908182..97908184,-p@chr9:97908182..97908184
-
Mm9::chrX:164292993..164293013,-p3@Frmpd4
Mm9::chrX:40782022..40782039,-p4@Odz1
Mm9::chrX:40782124..40782133,-p7@Odz1
Mm9::chrX:40782147..40782162,-p2@Odz1
Mm9::chrX:40782163..40782190,-p1@Odz1
Mm9::chrX:40782205..40782227,-p3@Odz1
Mm9::chrX:40782232..40782246,-p5@Odz1
Mm9::chrX:58436418..58436434,+p@chrX:58436418..58436434
+
Mm9::chrX:58436436..58436458,+p@chrX:58436436..58436458
+
Mm9::chrX:58436463..58436490,+p@chrX:58436463..58436490
+
Mm9::chrX:58436497..58436509,+p@chrX:58436497..58436509
+
Mm9::chrX:58436632..58436641,+p@chrX:58436632..58436641
+
Mm9::chrX:58436650..58436661,+p@chrX:58436650..58436661
+
Mm9::chrX:58436852..58436975,+p@chrX:58436852..58436975
+
Mm9::chrX:58436980..58436992,+p@chrX:58436980..58436992
+
Mm9::chrX:58437043..58437051,+p@chrX:58437043..58437051
+
Mm9::chrX:58437065..58437084,+p@chrX:58437065..58437084
+
Mm9::chrX:58437091..58437108,+p@chrX:58437091..58437108
+
Mm9::chrX:58437114..58437125,+p@chrX:58437114..58437125
+
Mm9::chrX:58438583..58438601,+p@chrX:58438583..58438601
+
Mm9::chrX:58438692..58438738,+p@chrX:58438692..58438738
+
Mm9::chrX:58438806..58438821,+p@chrX:58438806..58438821
+
Mm9::chrX:58438851..58438869,+p@chrX:58438851..58438869
+
Mm9::chrX:58438875..58438909,+p@chrX:58438875..58438909
+
Mm9::chrX:58438916..58438944,+p@chrX:58438916..58438944
+
Mm9::chrX:58438955..58438971,+p@chrX:58438955..58438971
+
Mm9::chrX:58439023..58439050,+p@chrX:58439023..58439050
+
Mm9::chrX:58439169..58439184,+p@chrX:58439169..58439184
+
Mm9::chrX:58439212..58439228,+p@chrX:58439212..58439228
+
Mm9::chrX:58439233..58439241,+p@chrX:58439233..58439241
+
Mm9::chrX:58439305..58439321,+p@chrX:58439305..58439321
+
Mm9::chrX:70815743..70815755,+p@chrX:70815743..70815755
+
Mm9::chrX:7783601..7783673,-p1@Porcn


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0051179localization2.32151821685269e-06
GO:0030054cell junction2.32151821685269e-06
GO:0007267cell-cell signaling2.32151821685269e-06
GO:0003001generation of a signal involved in cell-cell signaling2.62346525575169e-06
GO:0045045secretory pathway2.96217259454348e-06
GO:0006810transport5.58819891179642e-06
GO:0032940secretion by cell9.92136782370291e-06
GO:0051234establishment of localization1.01668017394792e-05
GO:0044456synapse part1.44703557302359e-05
GO:0019226transmission of nerve impulse1.44703557302359e-05
GO:0007269neurotransmitter secretion1.44703557302359e-05
GO:0005886plasma membrane1.44703557302359e-05
GO:0006887exocytosis1.44703557302359e-05
GO:0016020membrane1.44703557302359e-05
GO:0005509calcium ion binding1.55300041700964e-05
GO:0007268synaptic transmission2.47598232293147e-05
GO:0005515protein binding3.21595197843648e-05
GO:0046903secretion3.21595197843648e-05
GO:0045055regulated secretory pathway3.60933827462417e-05
GO:0005216ion channel activity5.11564935482699e-05
GO:0043167ion binding6.00028597823983e-05
GO:0022838substrate specific channel activity6.14318273975488e-05
GO:0017157regulation of exocytosis6.47370435970483e-05
GO:0007214gamma-aminobutyric acid signaling pathway7.52169240291363e-05
GO:0044459plasma membrane part7.52169240291363e-05
GO:0015075ion transmembrane transporter activity7.52169240291363e-05
GO:0022891substrate-specific transmembrane transporter activity7.52169240291363e-05
GO:0022803passive transmembrane transporter activity7.52169240291363e-05
GO:0015267channel activity7.52169240291363e-05
GO:0050808synapse organization and biogenesis7.59979097866465e-05
GO:0022857transmembrane transporter activity8.40630884453054e-05
GO:0030425dendrite0.000110586890737406
GO:0001505regulation of neurotransmitter levels0.000136492641972262
GO:0022892substrate-specific transporter activity0.000243723980380846
GO:0046872metal ion binding0.000253479031324889
GO:0043169cation binding0.000293614735732008
GO:0045211postsynaptic membrane0.000418361076808737
GO:0014051gamma-aminobutyric acid secretion0.000574471591492585
GO:0042734presynaptic membrane0.000581251160521816
GO:0005261cation channel activity0.000622158483945083
GO:0022836gated channel activity0.000982997819262159
GO:0051649establishment of cellular localization0.00103428529720045
GO:0051641cellular localization0.00119876074736673
GO:0051049regulation of transport0.00125927167837907
GO:0007635chemosensory behavior0.0014505968135894
GO:0042995cell projection0.00159601684287277
GO:0046873metal ion transmembrane transporter activity0.00159601684287277
GO:0008324cation transmembrane transporter activity0.00167408423267116
GO:0007416synaptogenesis0.00167911661812588
GO:0007242intracellular signaling cascade0.00177822169767703
GO:0017156calcium ion-dependent exocytosis0.00223760969577904
GO:0043062extracellular structure organization and biogenesis0.00232793824383367
GO:0005245voltage-gated calcium channel activity0.00250297982143019
GO:0006811ion transport0.0026780677956115
GO:0016192vesicle-mediated transport0.00277257078242223
GO:0044425membrane part0.00277257078242223
GO:0030073insulin secretion0.00307673487262195
GO:0007270nerve-nerve synaptic transmission0.00342755151034203
GO:0019933cAMP-mediated signaling0.00342755151034203
GO:0019935cyclic-nucleotide-mediated signaling0.0040704937699486
GO:0043005neuron projection0.00416422193114874
GO:0005262calcium channel activity0.0049924660264488
GO:0030072peptide hormone secretion0.005050214856554
GO:0008331high voltage-gated calcium channel activity0.005050214856554
GO:0019932second-messenger-mediated signaling0.0051228013534249
GO:0002790peptide secretion0.00536504088555716
GO:0022610biological adhesion0.00898280048413151
GO:0007155cell adhesion0.00898280048413151
GO:0007156homophilic cell adhesion0.0103808909875984
GO:0009187cyclic nucleotide metabolic process0.0103808909875984
GO:0035249synaptic transmission, glutamatergic0.0103808909875984
GO:0021694cerebellar Purkinje cell layer formation0.0103808909875984
GO:0021692cerebellar Purkinje cell layer morphogenesis0.0103808909875984
GO:0021702cerebellar Purkinje cell differentiation0.0103808909875984
GO:0015833peptide transport0.0105523355005315
GO:0007399nervous system development0.011746400145839
GO:0007409axonogenesis0.0119898936485521
GO:0005246calcium channel regulator activity0.0122707534691437
GO:0046879hormone secretion0.0125232637439188
GO:0042391regulation of membrane potential0.0132702165872109
GO:0021533cell differentiation in hindbrain0.0139831116215111
GO:0021697cerebellar cortex formation0.0139831116215111
GO:0009966regulation of signal transduction0.0139831116215111
GO:0048667neuron morphogenesis during differentiation0.0139831116215111
GO:0048812neurite morphogenesis0.0139831116215111
GO:0019992diacylglycerol binding0.0150342036059529
GO:0022832voltage-gated channel activity0.0150342036059529
GO:0005244voltage-gated ion channel activity0.0150342036059529
GO:0005624membrane fraction0.0172286699747199
GO:0006816calcium ion transport0.0173120885999405
GO:0048813dendrite morphogenesis0.0178579517217873
GO:0021680cerebellar Purkinje cell layer development0.0178579517217873
GO:0007154cell communication0.0190372760183657
GO:0008289lipid binding0.0190372760183657
GO:0006812cation transport0.0193094170197157
GO:0005891voltage-gated calcium channel complex0.0196963653519286
GO:0021696cerebellar cortex morphogenesis0.0196963653519286
GO:0000904cellular morphogenesis during differentiation0.0211263130339868
GO:0015457auxiliary transport protein activity0.0215425767875629
GO:0016247channel regulator activity0.0215425767875629
GO:0021587cerebellum morphogenesis0.0215425767875629
GO:0004697protein kinase C activity0.0215425767875629
GO:0022843voltage-gated cation channel activity0.0233259661479514
GO:0021575hindbrain morphogenesis0.0237031026664616
GO:0044464cell part0.0237031026664616
GO:0005623cell0.0237031026664616
GO:0043025cell soma0.023962745264999
GO:0031175neurite development0.0240611113988555
GO:0001565phorbol ester receptor activity0.0259421930320534
GO:0030001metal ion transport0.0265952249843909
GO:0000267cell fraction0.0265952249843909
GO:0021695cerebellar cortex development0.0280608569138898
GO:0043408regulation of MAPKKK cascade0.0280608569138898
GO:0004089carbonate dehydratase activity0.030717113635209
GO:0017137Rab GTPase binding0.030717113635209
GO:0008081phosphoric diester hydrolase activity0.0318496969257443
GO:0046058cAMP metabolic process0.0318496969257443
GO:0007528neuromuscular junction development0.0318496969257443
GO:0015674di-, tri-valent inorganic cation transport0.0318496969257443
GO:0016043cellular component organization and biogenesis0.0318496969257443
GO:0007610behavior0.0318496969257443
GO:0048666neuron development0.0318496969257443
GO:0048699generation of neurons0.0318496969257443
GO:0021548pons development0.0318496969257443
GO:0032353negative regulation of hormone biosynthetic process0.0318496969257443
GO:0016014dystrobrevin complex0.0318496969257443
GO:0004699calcium-independent protein kinase C activity0.0318496969257443
GO:0045743positive regulation of fibroblast growth factor receptor signaling pathway0.0318496969257443
GO:0021626central nervous system maturation0.0318496969257443
GO:0016921pyroglutamyl-peptidase II activity0.0318496969257443
GO:0032351negative regulation of hormone metabolic process0.0318496969257443
GO:0021679cerebellar molecular layer development0.0318496969257443
GO:0021590cerebellum maturation0.0318496969257443
GO:0021750vestibular nucleus development0.0318496969257443
GO:0021578hindbrain maturation0.0318496969257443
GO:0048541Peyer's patch development0.0318496969257443
GO:0048690regulation of axon extension involved in regeneration0.0318496969257443
GO:0048791calcium ion-dependent exocytosis of neurotransmitter0.0318496969257443
GO:0048691positive regulation of axon extension involved in regeneration0.0318496969257443
GO:0005923tight junction0.0327054851314931
GO:0007628adult walking behavior0.0335166607142263
GO:0022037metencephalon development0.0358279705425788
GO:0048489synaptic vesicle transport0.0358279705425788
GO:0021549cerebellum development0.0358279705425788
GO:00041143',5'-cyclic-nucleotide phosphodiesterase activity0.0386902995132172
GO:0005911intercellular junction0.0409754530072106
GO:0004890GABA-A receptor activity0.0412959273587842
GO:0022008neurogenesis0.0412959273587842
GO:0007411axon guidance0.0429898591606149
GO:0004112cyclic-nucleotide phosphodiesterase activity0.0434673014937421
GO:0031644regulation of neurological process0.0434673014937421
GO:0016917GABA receptor activity0.0499001502345047



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Cell Type
Ontology termp-valuen
CNS neuron (sensu Vertebrata)1.09e-1223
neuroblast (sensu Vertebrata)1.09e-1223
neuron4.38e-0733
neuronal stem cell4.38e-0733
neuroblast4.38e-0733
electrically signaling cell4.38e-0733

Uber Anatomy
Ontology termp-valuen
regional part of nervous system6.26e-3154
neurectoderm2.79e-3064
neural plate2.79e-3064
presumptive neural plate2.79e-3064
neural tube6.36e-2952
neural rod6.36e-2952
future spinal cord6.36e-2952
neural keel6.36e-2952
ecto-epithelium1.80e-2473
brain1.97e-2447
future brain1.97e-2447
pre-chordal neural plate3.48e-2449
central nervous system5.18e-2473
regional part of brain2.17e-2346
gray matter2.56e-2334
nervous system6.22e-2375
ectoderm-derived structure1.25e-2195
ectoderm1.25e-2195
presumptive ectoderm1.25e-2195
anterior neural tube8.76e-2140
regional part of forebrain8.58e-2039
forebrain8.58e-2039
future forebrain8.58e-2039
brain grey matter7.21e-1929
regional part of telencephalon7.21e-1929
telencephalon7.21e-1929
structure with developmental contribution from neural crest7.72e-1792
occipital lobe8.69e-1310
visual cortex8.69e-1310
neocortex8.69e-1310
cerebral cortex2.87e-1221
cerebral hemisphere2.87e-1221
pallium2.87e-1221
regional part of cerebral cortex1.82e-1117
posterior neural tube1.46e-0812
chordal neural plate1.46e-0812
basal ganglion5.51e-088
nuclear complex of neuraxis5.51e-088
aggregate regional part of brain5.51e-088
collection of basal ganglia5.51e-088
cerebral subcortex5.51e-088


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.11.30799
MA0004.10.061548
MA0006.10.957342
MA0007.11.0108
MA0009.10.0520914
MA0014.14.92108
MA0017.10.0476271
MA0019.10.0951547
MA0024.10.138144
MA0025.10.148705
MA0027.10.895308
MA0028.13.46588e-06
MA0029.10.111949
MA0030.10.205536
MA0031.10.0162479
MA0038.10.293502
MA0040.10.222591
MA0041.12.08834
MA0042.11.48203
MA0043.10.0533467
MA0046.10.0292127
MA0048.11.8213
MA0050.10.77882
MA0051.10.234557
MA0052.10.0246361
MA0055.12.03491
MA0056.10
MA0057.10.690989
MA0058.10.0632965
MA0059.10.0412748
MA0060.19.88005e-05
MA0061.10.0015462
MA0063.10
MA0066.10.00563641
MA0067.10.0267502
MA0068.10.12855
MA0069.10.237276
MA0070.10.22037
MA0071.10.244541
MA0072.10.333616
MA0073.10.992085
MA0074.15.59729e-05
MA0076.12.84634e-10
MA0077.10.430941
MA0078.10.165424
MA0081.10.0335249
MA0083.10.0529653
MA0084.10.137744
MA0087.11.19185
MA0088.10.261537
MA0089.10
MA0090.10.0426847
MA0091.10.0808642
MA0092.10.179506
MA0093.10.016397
MA0095.10
MA0098.10
MA0100.10.0040921
MA0101.10.00425009
MA0103.10.38732
MA0105.10.0245334
MA0106.10.79818
MA0107.10.00630849
MA0108.20.0362058
MA0109.10
MA0111.10.125207
MA0113.10.126829
MA0114.10.000206537
MA0115.10.0547076
MA0116.10.390463
MA0117.10.0117627
MA0119.10.00796668
MA0122.10.0488437
MA0124.10.659309
MA0125.10.048539
MA0130.10
MA0131.10.00337461
MA0132.10
MA0133.10
MA0135.10.163164
MA0136.10.00893814
MA0139.10.792747
MA0140.10.0090764
MA0141.10.00334311
MA0142.11.55505
MA0143.12.05212
MA0144.124.361
MA0145.11.2923
MA0146.11.03559e-07
MA0147.10.353353
MA0148.10.0566705
MA0149.13.66838
MA0062.21.66346e-14
MA0035.20.0201551
MA0039.20.000955678
MA0138.20.307472
MA0002.20.0397691
MA0137.226.5455
MA0104.20.431306
MA0047.20.208105
MA0112.20.00050883
MA0065.20.00117066
MA0150.10.0271926
MA0151.10
MA0152.10.510854
MA0153.10.0275442
MA0154.10.0663424
MA0155.10.148931
MA0156.13.82143e-06
MA0157.10.352228
MA0158.10
MA0159.10.0421327
MA0160.10.131574
MA0161.10
MA0162.12.20941
MA0163.10.12155
MA0164.10.00901304
MA0080.20.0020532
MA0018.20.0228145
MA0099.20.125972
MA0079.21.82293
MA0102.20.494561
MA0258.10.00461797
MA0259.10.223992
MA0442.10
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