MCL coexpression mm9:362: Difference between revisions
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{{MCL_coexpression_mm9 | {{MCL_coexpression_mm9|coexpression_dpi_cluster_scores_mean=0.0996529906341709,-0.0174439533922462,-0.00968858356883305,0.0128511688308598,0.0178417030928806,-0.00579913482538175,-0.0131021052559063,-0.0149324591833595,-0.0174439533922462,-0.0174439533922462,-0.0174439533922462,-0.0143826509111135,-0.0141757946121914,-0.014111619005226,-0.0068852763002381,-0.0104124755848126,-0.00647552571972719,-0.00874461743975792,-0.00574378540098931,-0.010128295779824,0.382217862072726,-0.0174439533922462,-0.012644720560541,0.00383671043414307,-0.006613902981714,-0.0174439533922462,-0.0100359821580519,-0.0174439533922462,0.00712323960185867,-0.0127956305266675,-0.013302266735894,-0.0174439533922462,-0.0174439533922462,-0.0174439533922462,-0.0121961952173585,-0.011507895836361,-0.0174439533922462,-0.0102135236667347,-0.0174439533922462,-0.0174439533922462,-0.0174439533922462,-0.0174439533922462,-0.0174439533922462,-0.0174439533922462,-0.0174439533922462,-0.0174439533922462,-0.0174439533922462,0.0217657757460791,0.0597843317867542,0.0785996279998816,0.0122362920457888,0.0194083507343575,-0.0174439533922462,-0.0174439533922462,-0.00081909879203081,-0.00885944437575066,-0.0122334258209459,-0.00884370319602962,0.221194896980538,0.197054362685412,0.205762038435988,0.00395713933451764,-0.0174439533922462,-0.0174439533922462,-0.00322463898000409,-0.0174439533922462,0.059437034214618,0.0458691295586812,0.133284224517959,0.124032244111636,0.127373959398994,0.347179919697183,0.345512771895791,0.19096574265386,0.168576327324004,0.0808940162012285,0.483771291696788,0.675926796178111,0.64311644412387,0.187922160220814,0.202088711141217,0.163607015445724,0.398209183599562,0.588136156365985,0.658898625346245,0.434072352481982,0.428006092104492,0.320958973256835,0.040150854022645,0.0808762228957163,-0.0121799492805592,-0.00460529126458076,-0.0174439533922462,-0.0174439533922462,-0.0174439533922462,-0.0174439533922462,0.125173732484844,-0.0174439533922462,-0.0126679162820796,-0.00638910183881876,0.0680349896747538,-0.0174439533922462,-0.0174439533922462,-0.0174439533922462,-0.0174439533922462,-0.0174439533922462,-0.0174439533922462,0.0818234334201804,-0.0174439533922462,0.00552975131728523,0.0357487545676332,0.0223008151407006,0.00556567568452869,0.0235579315384058,0.0470850454152531,-0.00438511878119862,-0.00597039856365004,0.00571911600097229,0.0233591997448281,0.0752675629366847,0.0320937428118245,0.0295204523721197,-0.0174439533922462,0.298989566041376,0.324979136399418,-0.000973294903650871,-0.00624165464276362,-0.0174439533922462,-0.0174439533922462,0.681564840602342,0.775280848288254,0.404767994407132,0.892625316323249,0.883492795356024,0.666327247802953,0.811981708926717,0.0654372761614238,0.0324422485935329,-0.00111464831121592,0.152129854999937,0.111595370198314,0.0844933030743147,0.109102243155396,0.0943565445011737,0.132289310808881,0.123151365579256,0.137917359664856,0.247674609994409,-0.00936973851894857,0.0244258490350802,0.0359821234913789,0.0459687404930919,0.0722423791829437,0.0557228881640152,0.0581751461472877,0.0662877694563734,-0.0174439533922462,-0.0174439533922462,-0.0174439533922462,0.0291194464181817,0.0297026892681124,0.0315187082354513,0.0352080170329013,0.0440297498599211,0.0441833530193542,0.049703154021534,0.0114311699292822,0.0404971959254285,0.0315146728633951,0.000268494633126185,-0.000214220690374324,-0.00683472092610386,-0.00923446276435164,-0.00263366295589401,1.28043312416205,0.516191166437152,-0.00104797591042642,0.00196592382540073,0.0416328389381598,0.0344477080583563,0.0705620722345689,0.00694843757258801,0.0214985598917852,0.028909267328854,0.0284816721527925,0.0194088580678109,0.0290778660922713,0.0405772928090644,0.0298526736308756,0.00383183923583824,-0.00125673879029286,0.00160547012845214,0.00712470698298332,0.0141225504235459,-0.00183522556155405,0.018439933404541,0.0162951373892745,0.00823299330710638,-0.00304469719353561,-0.0145966019670302,-0.0117965950926154,-0.0104759466791766,-0.0120745890067179,0.0168727735510816,0.00951885049518201,0.010012742111364,0.0110813449936868,-0.00483510585498387,-0.0042403387855685,-0.00804449093840005,7.54443994510198e-05,-6.004793982771e-07,0.0194110049039811,0.000604398888781781,0.00502200952338735,-0.00898766668703304,-0.0174439533922462,-0.0174439533922462,0.0465656397945558,0.0156720865518137,0.0150155773751631,0.0193368453921669,0.0168994023712926,0.032327890414151,0.052428627481844,0.0504251786411921,0.0378540913903624,0.0377289198483688,0.0615372756842459,0.0939570542970146,0.0678384353037245,0.0685119942521309,-0.0174439533922462,-0.0084620121519501,0.0554126105600046,0.0584875853503523,0.537115443051017,0.54801560097186,0.0335335919877609,0.0011784568287135,0.0642985245398794,0.0670589959649005,0.106794274763797,0.0614078182228354,0.0763039708977278,0.0894169087273478,0.0620506936292886,0.0838923045427961,0.0547732762548043,1.1172376414426,0.0567842431164048,0.122681384972976,0.149362028897294,0.101834823223382,-0.0174439533922462,0.01007495416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density;0.00256092968317102;14799,14812!GO:0007613;memory;0.00256092968317102;14799,14812!GO:0005234;extracellular-glutamate-gated ion channel activity;0.00256092968317102;14799,14812!GO:0004970;ionotropic glutamate receptor activity;0.00256092968317102;14799,14812!GO:0005231;excitatory extracellular ligand-gated ion channel activity;0.0104762422911387;14799,14812!GO:0008066;glutamate receptor activity;0.0104762422911387;14799,14812!GO:0022836;gated channel activity;0.0111973697202879;67516,14799,14812!GO:0017047;adrenocorticotropin-releasing hormone binding;0.014207378685594;12919!GO:0005230;extracellular ligand-gated ion channel activity;0.014207378685594;14799,14812!GO:0007611;learning and/or memory;0.014207378685594;14799,14812!GO:0005216;ion channel activity;0.014207378685594;67516,14799,14812!GO:0022838;substrate specific channel activity;0.014207378685594;67516,14799,14812!GO:0015276;ligand-gated ion channel activity;0.014207378685594;14799,14812!GO:0022834;ligand-gated channel activity;0.014207378685594;14799,14812!GO:0022803;passive transmembrane transporter activity;0.014207378685594;67516,14799,14812!GO:0015267;channel activity;0.014207378685594;67516,14799,14812!GO:0017046;peptide hormone binding;0.0160449762951106;12919!GO:0005624;membrane fraction;0.0185930011660257;12891,14799,14812!GO:0045211;postsynaptic membrane;0.0185930011660257;14799,14812!GO:0007616;long-term memory;0.0185930011660257;14799!GO:0001786;phosphatidylserine binding;0.0185930011660257;12891!GO:0050966;detection of mechanical stimulus during sensory perception of pain;0.0185930011660257;14812!GO:0044456;synapse part;0.0205067839558832;14799,14812!GO:0000267;cell fraction;0.0215318161976552;12891,14799,14812!GO:0031623;receptor internalization;0.0218104098803347;14799!GO:0017146;N-methyl-D-aspartate selective glutamate receptor complex;0.0252373070572831;14812!GO:0048266;behavioral response to pain;0.0252373070572831;14812!GO:0004972;N-methyl-D-aspartate selective glutamate receptor activity;0.0291959709185147;14812!GO:0001967;suckling behavior;0.0314401883232241;14812!GO:0042562;hormone binding;0.0314401883232241;12919!GO:0015075;ion transmembrane transporter activity;0.0314401883232241;67516,14799,14812!GO:0060079;regulation of excitatory postsynaptic membrane potential;0.0330135045063673;14812!GO:0035254;glutamate receptor binding;0.0330135045063673;14812!GO:0045471;response to ethanol;0.0358193650359458;14812!GO:0006811;ion transport;0.0358193650359458;67516,14799,14812!GO:0008328;ionotropic glutamate receptor complex;0.0358193650359458;14812!GO:0001662;behavioral fear response;0.0358193650359458;14812!GO:0002209;behavioral defense response;0.0358193650359458;14812!GO:0022891;substrate-specific transmembrane transporter activity;0.0371035929292651;67516,14799,14812!GO:0050974;detection of mechanical stimulus during sensory perception;0.0371035929292651;14812!GO:0048265;response to pain;0.0371035929292651;14812!GO:0060078;regulation of postsynaptic membrane potential;0.0371035929292651;14812!GO:0001964;startle response;0.0371035929292651;14812!GO:0042734;presynaptic membrane;0.0371035929292651;14812!GO:0050982;detection of mechanical stimulus;0.0392926393149871;14812!GO:0005261;cation channel activity;0.0396606778395125;67516,14812!GO:0005003;ephrin receptor activity;0.0396606778395125;13840!GO:0048168;regulation of neuronal synaptic plasticity;0.0396606778395125;14812!GO:0042596;fear response;0.0416161106041566;14812!GO:0006898;receptor-mediated endocytosis;0.0427397751399025;14799!GO:0022857;transmembrane transporter activity;0.0427397751399025;67516,14799,14812!GO:0009612;response to mechanical stimulus;0.0435838236247918;14812!GO:0051899;membrane depolarization;0.0435838236247918;14812!GO:0005856;cytoskeleton;0.0448179055878803;545156,14799,14812!GO:0046873;metal ion transmembrane transporter activity;0.0449524136953147;67516,14812!|ontology_enrichment_celltype=CL:0000117!6.53e-13!23;CL:0000337!6.53e-13!23;CL:0000540!3.45e-08!33;CL:0000047!3.45e-08!33;CL:0000031!3.45e-08!33;CL:0000404!3.45e-08!33|ontology_enrichment_disease=|ontology_enrichment_uberon=UBERON:0000073!2.03e-30!54;UBERON:0002346!2.33e-28!64;UBERON:0003075!2.33e-28!64;UBERON:0007284!2.33e-28!64;UBERON:0001049!2.74e-28!52;UBERON:0005068!2.74e-28!52;UBERON:0006241!2.74e-28!52;UBERON:0007135!2.74e-28!52;UBERON:0002020!6.33e-26!34;UBERON:0001017!3.52e-24!73;UBERON:0010371!4.10e-24!73;UBERON:0000955!1.69e-23!47;UBERON:0006238!1.69e-23!47;UBERON:0001016!3.93e-23!75;UBERON:0002616!2.61e-22!46;UBERON:0003056!4.28e-22!49;UBERON:0004121!5.75e-21!95;UBERON:0000924!5.75e-21!95;UBERON:0006601!5.75e-21!95;UBERON:0003528!7.03e-21!29;UBERON:0002791!7.03e-21!29;UBERON:0001893!7.03e-21!29;UBERON:0003080!4.65e-20!40;UBERON:0002780!5.09e-19!39;UBERON:0001890!5.09e-19!39;UBERON:0006240!5.09e-19!39;UBERON:0010314!4.42e-16!92;UBERON:0000956!1.98e-15!21;UBERON:0001869!1.98e-15!21;UBERON:0000203!1.98e-15!21;UBERON:0002021!3.65e-13!10;UBERON:0000411!3.65e-13!10;UBERON:0001950!3.65e-13!10;UBERON:0002619!6.09e-13!17;UBERON:0003076!1.05e-08!12;UBERON:0003057!1.05e-08!12;UBERON:0002240!2.67e-07!6;UBERON:0005174!2.67e-07!6;UBERON:0001137!2.67e-07!6|tfbs_overrepresentation_for_novel_motifs=0.128666,0.240865,0.11338,0.15483,0.20878,0.164217,0.644497,0.103276,0.271611,0.387333,0.195931,1.1706,0.767437,0.665571,0.855559,0,0.38962,0.0539173,0.0898284,0.341948,0.310483,0.362751,0.235613,0.206855,0.117721,0.256873,1.36041,1.01147,0.26816,0.487282,0.504259,0.476579,0.760493,0.348165,0.0646774,2.02973,0.184934,0.617803,0.365025,2.21616,0.0555312,0.172188,0.0111948,0.232623,0.0757397,0.147728,0.865599,0.553328,0.243974,0.0792869,0.374992,0.277452,1.74867,0.603398,0.619345,0.241579,1.00244,1.13518,0.933589,0.240064,1.16175,0.777251,0.0301822,1.70594,0.2499,0.399544,0.745869,1.08074,0.455021,0.938231,0.102831,0.108881,3.53792,0.650163,0.598389,0.551953,0.176178,0.845129,0.444191,0.0954455,0.497983,0.404291,0.283653,0.45564,0.545133,0.0609017,2.55333,0.284701,0.327889,1.23935,0.811671,0.549603,0.487824,0.216228,3.0171,0.0337525,0.248387,0.490297,0.324141,3.99029,1.5776,0.476334,0.58753,0.375488,0.374608,0.511961,0.42513,1.04357,0.664746,0.31304,0.393011,0.58915,0.318143,0.578821,0.818358,0.444691,0.30406,0.475893,0.390716,0.715243,0.655146,0.348339,2.84469,0.314081,0.869916,0.447391,0.233251,0.481866,0.744444,0.220019,0.572132,0.150169,0.716744,0.251791,0.838892,19.3629,0.133745,0.17313,0.792231,1.60311,1.2081,0.750296,0.267427,0.48577,0.966134,0.513419,0.326451,1.56378,1.94765,1.22075,0.759711,0.315258,0.60483,0.14223,0.251095,0.680035,0.278231,0.0699281,0.797218,0.416368,0.801233,0.544365,0.447776,0.779273,0.366469,0.245542,0.724198,0.217399,0.00228169|tfbs_overrepresentation_jaspar=MA0003.1;0.00933497,MA0004.1;0.15514,MA0006.1;0.486909,MA0007.1;1.41117,MA0009.1;0.499857,MA0014.1;0.0202604,MA0017.1;0.074682,MA0019.1;0.344318,MA0024.1;0.461433,MA0025.1;0.712532,MA0027.1;2.09948,MA0028.1;0.067163,MA0029.1;0.442582,MA0030.1;0.448261,MA0031.1;0.417663,MA0038.1;0.256813,MA0040.1;0.510947,MA0041.1;0.109446,MA0042.1;0.102161,MA0043.1;0.586618,MA0046.1;0.531807,MA0048.1;0.638726,MA0050.1;0.533529,MA0051.1;0.263603,MA0052.1;0.518112,MA0055.1;0.358275,MA0056.1;0,MA0057.1;3.26419,MA0058.1;0.0984787,MA0059.1;0.105184,MA0060.1;0.0321237,MA0061.1;0.0422754,MA0063.1;0,MA0066.1;0.248543,MA0067.1;0.817149,MA0068.1;0.100153,MA0069.1;1.2887,MA0070.1;0.509795,MA0071.1;0.180178,MA0072.1;0.502282,MA0073.1;6.78556,MA0074.1;0.222108,MA0076.1;0.0840393,MA0077.1;0.48317,MA0078.1;0.289095,MA0081.1;0.37696,MA0083.1;0.585897,MA0084.1;1.1333,MA0087.1;0.546952,MA0088.1;2.13087,MA0089.1;0,MA0090.1;0.416778,MA0091.1;0.491727,MA0092.1;0.826612,MA0093.1;0.0709755,MA0095.1;0,MA0098.1;0,MA0100.1;0.213782,MA0101.1;0.110172,MA0103.1;0.0799057,MA0105.1;0.063741,MA0106.1;0.295186,MA0107.1;0.0769078,MA0108.2;0.363107,MA0109.1;0,MA0111.1;0.863236,MA0113.1;1.37626,MA0114.1;0.0414319,MA0115.1;0.589161,MA0116.1;0.839093,MA0117.1;0.559943,MA0119.1;0.110503,MA0122.1;0.577888,MA0124.1;0.766819,MA0125.1;0.697415,MA0130.1;0,MA0131.1;0.340612,MA0132.1;0,MA0133.1;0,MA0135.1;0.619844,MA0136.1;0.236653,MA0139.1;0.0996617,MA0140.1;0.2137,MA0141.1;0.0898383,MA0142.1;0.40532,MA0143.1;0.285913,MA0144.1;0.666779,MA0145.1;0.0580487,MA0146.1;0.000787799,MA0147.1;0.0471319,MA0148.1;0.165681,MA0149.1;6.33911,MA0062.2;0.0144279,MA0035.2;0.217072,MA0039.2;0.0108975,MA0138.2;0.334152,MA0002.2;0.0238548,MA0137.2;0.0883456,MA0104.2;0.0278464,MA0047.2;0.256234,MA0112.2;0.134174,MA0065.2;0.134947,MA0150.1;0.145553,MA0151.1;0,MA0152.1;0.256315,MA0153.1;0.635107,MA0154.1;3.4293,MA0155.1;0.0735373,MA0156.1;0.0836044,MA0157.1;0.378326,MA0158.1;0,MA0159.1;0.423802,MA0160.1;0.968677,MA0161.1;0,MA0162.1;1.46529,MA0163.1;0.00467197,MA0164.1;0.23692,MA0080.2;0.0773362,MA0018.2;0.244112,MA0099.2;0.329046,MA0079.2;1.79817,MA0102.2;1.18455,MA0258.1;1.8377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| ||
|coexpression_dpi_cluster_scores_mean=0.0996529906341709,-0.0174439533922462,-0.00968858356883305,0.0128511688308598,0.0178417030928806,-0.00579913482538175,-0.0131021052559063,-0.0149324591833595,-0.0174439533922462,-0.0174439533922462,-0.0174439533922462,-0.0143826509111135,-0.0141757946121914,-0.014111619005226,-0.0068852763002381,-0.0104124755848126,-0.00647552571972719,-0.00874461743975792,-0.00574378540098931,-0.010128295779824,0.382217862072726,-0.0174439533922462,-0.012644720560541,0.00383671043414307,-0.006613902981714,-0.0174439533922462,-0.0100359821580519,-0.0174439533922462,0.00712323960185867,-0.0127956305266675,-0.013302266735894,-0.0174439533922462,-0.0174439533922462,-0.0174439533922462,-0.0121961952173585,-0.011507895836361,-0.0174439533922462,-0.0102135236667347,-0.0174439533922462,-0.0174439533922462,-0.0174439533922462,-0.0174439533922462,-0.0174439533922462,-0.0174439533922462,-0.0174439533922462,-0.0174439533922462,-0.0174439533922462,0.0217657757460791,0.0597843317867542,0.0785996279998816,0.0122362920457888,0.0194083507343575,-0.0174439533922462,-0.0174439533922462,-0.00081909879203081,-0.00885944437575066,-0.0122334258209459,-0.00884370319602962,0.221194896980538,0.197054362685412,0.205762038435988,0.00395713933451764,-0.0174439533922462,-0.0174439533922462,-0.00322463898000409,-0.0174439533922462,0.059437034214618,0.0458691295586812,0.133284224517959,0.124032244111636,0.127373959398994,0.347179919697183,0.345512771895791,0.19096574265386,0.168576327324004,0.0808940162012285,0.483771291696788,0.675926796178111,0.64311644412387,0.187922160220814,0.202088711141217,0.163607015445724,0.398209183599562,0.588136156365985,0.658898625346245,0.434072352481982,0.428006092104492,0.320958973256835,0.040150854022645,0.0808762228957163,-0.0121799492805592,-0.00460529126458076,-0.0174439533922462,-0.0174439533922462,-0.0174439533922462,-0.0174439533922462,0.125173732484844,-0.0174439533922462,-0.0126679162820796,-0.00638910183881876,0.0680349896747538,-0.0174439533922462,-0.0174439533922462,-0.0174439533922462,-0.0174439533922462,-0.0174439533922462,-0.0174439533922462,0.0818234334201804,-0.0174439533922462,0.00552975131728523,0.0357487545676332,0.0223008151407006,0.00556567568452869,0.0235579315384058,0.0470850454152531,-0.00438511878119862,-0.00597039856365004,0.00571911600097229,0.0233591997448281,0.0752675629366847,0.0320937428118245,0.0295204523721197,-0.0174439533922462,0.298989566041376,0.324979136399418,-0.000973294903650871,-0.00624165464276362,-0.0174439533922462,-0.0174439533922462,0.681564840602342,0.775280848288254,0.404767994407132,0.892625316323249,0.883492795356024,0.666327247802953,0.811981708926717,0.0654372761614238,0.0324422485935329,-0.00111464831121592,0.152129854999937,0.111595370198314,0.0844933030743147,0.109102243155396,0.0943565445011737,0.132289310808881,0.123151365579256,0.137917359664856,0.247674609994409,-0.00936973851894857,0.0244258490350802,0.0359821234913789,0.0459687404930919,0.0722423791829437,0.0557228881640152,0.0581751461472877,0.0662877694563734,-0.0174439533922462,-0.0174439533922462,-0.0174439533922462,0.0291194464181817,0.0297026892681124,0.0315187082354513,0.0352080170329013,0.0440297498599211,0.0441833530193542,0.049703154021534,0.0114311699292822,0.0404971959254285,0.0315146728633951,0.000268494633126185,-0.000214220690374324,-0.00683472092610386,-0.00923446276435164,-0.00263366295589401,1.28043312416205,0.516191166437152,-0.00104797591042642,0.00196592382540073,0.0416328389381598,0.0344477080583563,0.0705620722345689,0.00694843757258801,0.0214985598917852,0.028909267328854,0.0284816721527925,0.0194088580678109,0.0290778660922713,0.0405772928090644,0.0298526736308756,0.00383183923583824,-0.00125673879029286,0.00160547012845214,0.00712470698298332,0.0141225504235459,-0.00183522556155405,0.018439933404541,0.0162951373892745,0.00823299330710638,-0.00304469719353561,-0.0145966019670302,-0.0117965950926154,-0.0104759466791766,-0.0120745890067179,0.0168727735510816,0.00951885049518201,0.010012742111364,0.0110813449936868,-0.00483510585498387,-0.0042403387855685,-0.00804449093840005,7.54443994510198e-05,-6.004793982771e-07,0.0194110049039811,0.000604398888781781,0.00502200952338735,-0.00898766668703304,-0.0174439533922462,-0.0174439533922462,0.0465656397945558,0.0156720865518137,0.0150155773751631,0.0193368453921669,0.0168994023712926,0.032327890414151,0.052428627481844,0.0504251786411921,0.0378540913903624,0.0377289198483688,0.0615372756842459,0.0939570542970146,0.0678384353037245,0.0685119942521309,-0.0174439533922462,-0.0084620121519501,0.0554126105600046,0.0584875853503523,0.537115443051017,0.54801560097186,0.0335335919877609,0.0011784568287135,0.0642985245398794,0.0670589959649005,0.106794274763797,0.0614078182228354,0.0763039708977278,0.0894169087273478,0.0620506936292886,0.0838923045427961,0.0547732762548043,1.1172376414426,0.0567842431164048,0.122681384972976,0.149362028897294,0.101834823223382,-0.0174439533922462,0.0100749541690768,0.00326163384568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| |||
| | |||
}} | |||
Latest revision as of 15:10, 17 September 2013
Phase1 CAGE Peaks
| Short description | |
|---|---|
| Mm9::chr10:106069742..106069754,+ | p@chr10:106069742..106069754 + |
| Mm9::chr11:56825300..56825329,+ | p1@Gria1 |
| Mm9::chr11:56825334..56825345,+ | p3@Gria1 |
| Mm9::chr11:56825447..56825448,+ | p10@Gria1 |
| Mm9::chr13:96214655..96214666,- | p2@Crhbp |
| Mm9::chr14:56129430..56129468,+ | p1@Cpne6 |
| Mm9::chr14:76362222..76362254,+ | p@chr14:76362222..76362254 + |
| Mm9::chr14:76362263..76362291,+ | p@chr14:76362263..76362291 + |
| Mm9::chr14:88870750..88870829,- | p@chr14:88870750..88870829 - |
| Mm9::chr16:34514130..34514142,- | p17@Kalrn |
| Mm9::chr16:34514149..34514165,- | p11@Kalrn |
| Mm9::chr16:34514170..34514214,- | p3@Kalrn |
| Mm9::chr16:34514261..34514270,- | p19@Kalrn |
| Mm9::chr16:34514291..34514297,- | p27@Kalrn |
| Mm9::chr16:60605097..60605117,- | p1@Epha6 |
| Mm9::chr16:60605371..60605385,- | p3@Epha6 |
| Mm9::chr16:60605417..60605435,- | p4@Epha6 |
| Mm9::chr16:7217845..7217853,+ | p33@Rbfox1 |
| Mm9::chr18:86564394..86564405,+ | p5@Neto1 |
| Mm9::chr6:136123290..136123321,- | p@chr6:136123290..136123321 - |
| Mm9::chr7:98691574..98691605,+ | p17@Dlg2 |
Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data
| GO ID | GO name | FDR corrected p-value |
|---|---|---|
| GO:0014069 | postsynaptic density | 0.00256092968317102 |
| GO:0007613 | memory | 0.00256092968317102 |
| GO:0005234 | extracellular-glutamate-gated ion channel activity | 0.00256092968317102 |
| GO:0004970 | ionotropic glutamate receptor activity | 0.00256092968317102 |
| GO:0005231 | excitatory extracellular ligand-gated ion channel activity | 0.0104762422911387 |
| GO:0008066 | glutamate receptor activity | 0.0104762422911387 |
| GO:0022836 | gated channel activity | 0.0111973697202879 |
| GO:0017047 | adrenocorticotropin-releasing hormone binding | 0.014207378685594 |
| GO:0005230 | extracellular ligand-gated ion channel activity | 0.014207378685594 |
| GO:0007611 | learning and/or memory | 0.014207378685594 |
| GO:0005216 | ion channel activity | 0.014207378685594 |
| GO:0022838 | substrate specific channel activity | 0.014207378685594 |
| GO:0015276 | ligand-gated ion channel activity | 0.014207378685594 |
| GO:0022834 | ligand-gated channel activity | 0.014207378685594 |
| GO:0022803 | passive transmembrane transporter activity | 0.014207378685594 |
| GO:0015267 | channel activity | 0.014207378685594 |
| GO:0017046 | peptide hormone binding | 0.0160449762951106 |
| GO:0005624 | membrane fraction | 0.0185930011660257 |
| GO:0045211 | postsynaptic membrane | 0.0185930011660257 |
| GO:0007616 | long-term memory | 0.0185930011660257 |
| GO:0001786 | phosphatidylserine binding | 0.0185930011660257 |
| GO:0050966 | detection of mechanical stimulus during sensory perception of pain | 0.0185930011660257 |
| GO:0044456 | synapse part | 0.0205067839558832 |
| GO:0000267 | cell fraction | 0.0215318161976552 |
| GO:0031623 | receptor internalization | 0.0218104098803347 |
| GO:0017146 | N-methyl-D-aspartate selective glutamate receptor complex | 0.0252373070572831 |
| GO:0048266 | behavioral response to pain | 0.0252373070572831 |
| GO:0004972 | N-methyl-D-aspartate selective glutamate receptor activity | 0.0291959709185147 |
| GO:0001967 | suckling behavior | 0.0314401883232241 |
| GO:0042562 | hormone binding | 0.0314401883232241 |
| GO:0015075 | ion transmembrane transporter activity | 0.0314401883232241 |
| GO:0060079 | regulation of excitatory postsynaptic membrane potential | 0.0330135045063673 |
| GO:0035254 | glutamate receptor binding | 0.0330135045063673 |
| GO:0045471 | response to ethanol | 0.0358193650359458 |
| GO:0006811 | ion transport | 0.0358193650359458 |
| GO:0008328 | ionotropic glutamate receptor complex | 0.0358193650359458 |
| GO:0001662 | behavioral fear response | 0.0358193650359458 |
| GO:0002209 | behavioral defense response | 0.0358193650359458 |
| GO:0022891 | substrate-specific transmembrane transporter activity | 0.0371035929292651 |
| GO:0050974 | detection of mechanical stimulus during sensory perception | 0.0371035929292651 |
| GO:0048265 | response to pain | 0.0371035929292651 |
| GO:0060078 | regulation of postsynaptic membrane potential | 0.0371035929292651 |
| GO:0001964 | startle response | 0.0371035929292651 |
| GO:0042734 | presynaptic membrane | 0.0371035929292651 |
| GO:0050982 | detection of mechanical stimulus | 0.0392926393149871 |
| GO:0005261 | cation channel activity | 0.0396606778395125 |
| GO:0005003 | ephrin receptor activity | 0.0396606778395125 |
| GO:0048168 | regulation of neuronal synaptic plasticity | 0.0396606778395125 |
| GO:0042596 | fear response | 0.0416161106041566 |
| GO:0006898 | receptor-mediated endocytosis | 0.0427397751399025 |
| GO:0022857 | transmembrane transporter activity | 0.0427397751399025 |
| GO:0009612 | response to mechanical stimulus | 0.0435838236247918 |
| GO:0051899 | membrane depolarization | 0.0435838236247918 |
| GO:0005856 | cytoskeleton | 0.0448179055878803 |
| GO:0046873 | metal ion transmembrane transporter activity | 0.0449524136953147 |
Relative expression of the co-expression cluster over median <br>Analyst:
Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>
| Ontology term | p-value | n |
|---|---|---|
| CNS neuron (sensu Vertebrata) | 6.53e-13 | 23 |
| neuroblast (sensu Vertebrata) | 6.53e-13 | 23 |
| neuron | 3.45e-08 | 33 |
| neuronal stem cell | 3.45e-08 | 33 |
| neuroblast | 3.45e-08 | 33 |
| electrically signaling cell | 3.45e-08 | 33 |
TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data
Novel motifs
JASPAR motifs
| Motifs | -log10(p-value) |
|---|---|
| MA0003.1 | 0.00933497 |
| MA0004.1 | 0.15514 |
| MA0006.1 | 0.486909 |
| MA0007.1 | 1.41117 |
| MA0009.1 | 0.499857 |
| MA0014.1 | 0.0202604 |
| MA0017.1 | 0.074682 |
| MA0019.1 | 0.344318 |
| MA0024.1 | 0.461433 |
| MA0025.1 | 0.712532 |
| MA0027.1 | 2.09948 |
| MA0028.1 | 0.067163 |
| MA0029.1 | 0.442582 |
| MA0030.1 | 0.448261 |
| MA0031.1 | 0.417663 |
| MA0038.1 | 0.256813 |
| MA0040.1 | 0.510947 |
| MA0041.1 | 0.109446 |
| MA0042.1 | 0.102161 |
| MA0043.1 | 0.586618 |
| MA0046.1 | 0.531807 |
| MA0048.1 | 0.638726 |
| MA0050.1 | 0.533529 |
| MA0051.1 | 0.263603 |
| MA0052.1 | 0.518112 |
| MA0055.1 | 0.358275 |
| MA0056.1 | 0 |
| MA0057.1 | 3.26419 |
| MA0058.1 | 0.0984787 |
| MA0059.1 | 0.105184 |
| MA0060.1 | 0.0321237 |
| MA0061.1 | 0.0422754 |
| MA0063.1 | 0 |
| MA0066.1 | 0.248543 |
| MA0067.1 | 0.817149 |
| MA0068.1 | 0.100153 |
| MA0069.1 | 1.2887 |
| MA0070.1 | 0.509795 |
| MA0071.1 | 0.180178 |
| MA0072.1 | 0.502282 |
| MA0073.1 | 6.78556 |
| MA0074.1 | 0.222108 |
| MA0076.1 | 0.0840393 |
| MA0077.1 | 0.48317 |
| MA0078.1 | 0.289095 |
| MA0081.1 | 0.37696 |
| MA0083.1 | 0.585897 |
| MA0084.1 | 1.1333 |
| MA0087.1 | 0.546952 |
| MA0088.1 | 2.13087 |
| MA0089.1 | 0 |
| MA0090.1 | 0.416778 |
| MA0091.1 | 0.491727 |
| MA0092.1 | 0.826612 |
| MA0093.1 | 0.0709755 |
| MA0095.1 | 0 |
| MA0098.1 | 0 |
| MA0100.1 | 0.213782 |
| MA0101.1 | 0.110172 |
| MA0103.1 | 0.0799057 |
| MA0105.1 | 0.063741 |
| MA0106.1 | 0.295186 |
| MA0107.1 | 0.0769078 |
| MA0108.2 | 0.363107 |
| MA0109.1 | 0 |
| MA0111.1 | 0.863236 |
| MA0113.1 | 1.37626 |
| MA0114.1 | 0.0414319 |
| MA0115.1 | 0.589161 |
| MA0116.1 | 0.839093 |
| MA0117.1 | 0.559943 |
| MA0119.1 | 0.110503 |
| MA0122.1 | 0.577888 |
| MA0124.1 | 0.766819 |
| MA0125.1 | 0.697415 |
| MA0130.1 | 0 |
| MA0131.1 | 0.340612 |
| MA0132.1 | 0 |
| MA0133.1 | 0 |
| MA0135.1 | 0.619844 |
| MA0136.1 | 0.236653 |
| MA0139.1 | 0.0996617 |
| MA0140.1 | 0.2137 |
| MA0141.1 | 0.0898383 |
| MA0142.1 | 0.40532 |
| MA0143.1 | 0.285913 |
| MA0144.1 | 0.666779 |
| MA0145.1 | 0.0580487 |
| MA0146.1 | 0.000787799 |
| MA0147.1 | 0.0471319 |
| MA0148.1 | 0.165681 |
| MA0149.1 | 6.33911 |
| MA0062.2 | 0.0144279 |
| MA0035.2 | 0.217072 |
| MA0039.2 | 0.0108975 |
| MA0138.2 | 0.334152 |
| MA0002.2 | 0.0238548 |
| MA0137.2 | 0.0883456 |
| MA0104.2 | 0.0278464 |
| MA0047.2 | 0.256234 |
| MA0112.2 | 0.134174 |
| MA0065.2 | 0.134947 |
| MA0150.1 | 0.145553 |
| MA0151.1 | 0 |
| MA0152.1 | 0.256315 |
| MA0153.1 | 0.635107 |
| MA0154.1 | 3.4293 |
| MA0155.1 | 0.0735373 |
| MA0156.1 | 0.0836044 |
| MA0157.1 | 0.378326 |
| MA0158.1 | 0 |
| MA0159.1 | 0.423802 |
| MA0160.1 | 0.968677 |
| MA0161.1 | 0 |
| MA0162.1 | 1.46529 |
| MA0163.1 | 0.00467197 |
| MA0164.1 | 0.23692 |
| MA0080.2 | 0.0773362 |
| MA0018.2 | 0.244112 |
| MA0099.2 | 0.329046 |
| MA0079.2 | 1.79817 |
| MA0102.2 | 1.18455 |
| MA0258.1 | 1.8377 |
| MA0259.1 | 0.165891 |
| MA0442.1 | 0 |
