FFCP PHASE1:Hg19::chr1:26228136..26228182,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC= | |||
|TSSclassifier=weak | |||
|UniProt= | |||
|association_with_transcript=55bp_to_BC040585_5end | |||
|coexpression_cluster_id=C3961 | |||
|description=CAGE_peak_1_at_BC040585_5end | |||
|id=chr1:26228136..26228182,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000540;8.67e-07;6!CL:0000404;8.67e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,3.74e-07,6;CL:0000031,3.74e-07,6;CL:0000404,3.74e-07,6 | |||
|ontology_enrichment_development_v019=CL:0000031;8.67e-07;6 | |||
|ontology_enrichment_disease=DOID:162!6.48e-19!235;DOID:14566!7.20e-18!239;DOID:2531!3.09e-13!51;DOID:0060083!3.09e-13!51;DOID:0050686!1.07e-12!137;DOID:1240!5.73e-11!39;DOID:8692!9.28e-09!31 | |||
|ontology_enrichment_disease_v019=DOID:8692;1.41e-10;31!DOID:2531;5.24e-10;51!DOID:0060083;5.24e-10;51!DOID:1240;2.24e-09;39 | |||
|ontology_enrichment_disease_v019_2=DOID:2531,2.71e-14,51;DOID:0060083,2.71e-14,51;DOID:1240,4.17e-12,39;DOID:162,5.55e-12,235;DOID:14566,3.25e-11,239;DOID:8692,1.10e-10,31;DOID:0050686,6.17e-10,137 | |||
|ontology_enrichment_uberon=UBERON:0001017!5.17e-15!82;UBERON:0000073!2.69e-14!94;UBERON:0001016!2.69e-14!94;UBERON:0005743!1.40e-13!86;UBERON:0001049!5.51e-12!57;UBERON:0005068!5.51e-12!57;UBERON:0006241!5.51e-12!57;UBERON:0007135!5.51e-12!57;UBERON:0000955!1.47e-11!69;UBERON:0006238!1.47e-11!69;UBERON:0002020!4.49e-11!34;UBERON:0003528!4.49e-11!34;UBERON:0002619!4.47e-10!22;UBERON:0002791!5.76e-10!33;UBERON:0001893!7.42e-10!34;UBERON:0002780!9.34e-10!41;UBERON:0001890!9.34e-10!41;UBERON:0006240!9.34e-10!41;UBERON:0002346!1.15e-09!90;UBERON:0000956!1.58e-09!25;UBERON:0000203!1.58e-09!25;UBERON:0001869!1.70e-09!32;UBERON:0002616!3.83e-09!59;UBERON:0003080!4.07e-09!42;UBERON:0001950!6.78e-09!20;UBERON:0003075!1.37e-08!86;UBERON:0007284!1.37e-08!86;UBERON:0000924!2.25e-08!173;UBERON:0006601!2.25e-08!173;UBERON:0004121!1.59e-07!169;UBERON:0003056!6.56e-07!61 | |||
|ontology_enrichment_uberon_v019=UBERON:0000956;3.45e-12;25!UBERON:0000203;3.45e-12;25!UBERON:0002619;5.76e-12;22!UBERON:0003528;7.92e-12;34!UBERON:0002020;7.92e-12;34!UBERON:0002791;1.22e-11;32!UBERON:0001869;8.30e-11;32!UBERON:0002780;1.65e-10;41!UBERON:0001890;1.65e-10;41!UBERON:0001950;3.43e-10;20!UBERON:0001893;8.15e-10;34!UBERON:0000073;1.00e-07;53!UBERON:0002616;1.00e-07;53!UBERON:0000955;1.55e-07;68!UBERON:0001017;4.45e-07;75!UBERON:0001016;5.02e-07;83 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,9.55e-19,81;UBERON:0001016,2.53e-18,89;UBERON:0001049,9.45e-15,56;UBERON:0005068,9.45e-15,56;UBERON:0006241,9.45e-15,56;UBERON:0007135,9.45e-15,56;UBERON:0003528,3.14e-14,34;UBERON:0002020,3.14e-14,34;UBERON:0000955,3.62e-13,68;UBERON:0006238,3.62e-13,68;UBERON:0002780,5.35e-13,41;UBERON:0001890,5.35e-13,41;UBERON:0003080,5.35e-13,41;UBERON:0006240,5.35e-13,41;UBERON:0002791,8.84e-13,32;UBERON:0000073,1.01e-12,53;UBERON:0002616,1.01e-12,53;UBERON:0002346,1.67e-12,86;UBERON:0002619,5.73e-12,22;UBERON:0000956,6.77e-12,25;UBERON:0000203,6.77e-12,25;UBERON:0001893,1.38e-11,34;UBERON:0001869,2.27e-11,32;UBERON:0003075,3.48e-11,82;UBERON:0007284,3.48e-11,82;UBERON:0003056,5.05e-11,61;UBERON:0001950,3.59e-10,20;UBERON:0004121,3.71e-10,171;UBERON:0000924,3.71e-10,171;UBERON:0006601,3.71e-10,171;UBERON:0010371,2.42e-09,104;UBERON:0011216,6.90e-08,223;UBERON:0010314,1.59e-07,132 | |||
|phase1_expression=0,0,0,0,0.446961094427288,0,0,0,0,0.737201809504527,0,0.436882744260345,0.263766978228454,0,0,0.672325146451775,0,0.730310090387373,0,0.861847406537515,0,0.313454721478088,0,1.09499540058307,1.00434111675842,0.687720651731561,0.738905305049512,0.865818594450472,0,0.383829398097213,0,1.83884244895785,0.6024118375565,0.739508020333575,1.00707360754392,0.710846162437108,0.880801318004542,0,0,0,0,0,0.257575567634187,0,0,0,0,0,0.309706370895104,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.426730222566507,0,0,0,0,0.569212969109448,0,0,0,0,1.58030450865046,0,0.393010762749165,0,0,0,0,0,0.334231370655521,0.294605907474837,0,0,0,0.390178042679635,0.986627427622057,0.829050053357545,1.15921234294021,0,0.535081656179426,0,0.906474741580529,0,0.34362744548263,0,0.318565414324097,0.651083453856419,0,0.301150238155546,0,0,0,0,0,0.534880391567015,0,0,0,0.12786256184353,0,0,0.289693037921647,0,0,1.03988298880475,1.77383517970051,1.22968699970376,0.458426764241994,0,0,0,0,0,0.238490624305342,0,1.11437250398869,0.596287222100115,0,0,0,0.419499436209906,0.550236083880135,0,0.775250277507987,0.35576626268671,0,0,0.760272105718513,0.976248230192678,0.367663080345869,0.81014194788176,0.625098097988558,1.12264686313085,0.563057402416611,0,0.949265659568129,1.46561395144326,0,0,0.872188104285069,0,0.379891534993739,0,0.573673241497627,0,0,0,0,0,0.404132016209064,0.326923806226917,0.151357427644931,0.576175924479999,0.234321431833797,0,0,0.448346041655403,1.40921398372518,1.45685649931318,1.68540968042698,0,2.21101771161182,0,1.18800285728205,0,0,0,2.69337782326506,0.500474079487857,0,2.63386572528503,0,0.300476117813194,0.113432183160021,1.79389635688862,0.427114777637135,0.211931901159562,0.300091096084402,0.206105058476878,0,0.18611685633159,0.506328996723799,0.292311015483596,0.252433774244115,0.0920498986422993,0.161646056818812,0,0.604512589365842,0.847802961552438,0.386521706326594,0.272746120590835,0.286804595389004,1.21973706129595,0.530119073285941,1.04574548582567,1.65857688024593,0.504641701751257,4.37972830890996,0,0,1.38134921352481,0,1.44375896333917,1.41968160047813,1.01150814046861,0.241011029883482,1.21323370005633,0.653638332277218,0.71181185733329,1.75280700608214,0.98110732562673,1.53898862778556,0,0,0.4115740113314,1.47008711385542,0,0.982827216677626,0.590789906681404,3.5317047953172,0.122988438543114,0.343135620597051,0.109750285408626,0,0.804231779293047,0.370353780634118,0,1.03993478527958,0,0.695582429850461,0.117408694235822,1.73239737313289,0.925971025153221,0.761016608938393,0,0.858486162094873,0,0.234004265139238,0.445893486866185,0.93733833986777,0.503946384596579,0.283550194484773,0.179117045405697,0.581267877027924,0.383382679165211,0,0.264145302039678,0,0.288239906833923,0.25248486685276,0.571481048629521,0.381988425558278,0,0,0.822619941626588,1.50171528921959,0,0,0.87192013766656,1.24675085895615,0.129271715757778,0,0.845302752556,0,0,0.514414748524284,0,0.266422179016099,0.142977993658148,0,0,0,0.355391948742546,1.58390374586686,0.301439377059586,0,0.299918973546171,0,0.502257091432126,4.21667878966063,0,2.29723871668228,2.85273810081437,0.579125226670317,0.410952645100767,0.358121926479791,2.4658731678576,0,0,0,0.508189248444927,0,6.95959931499926,2.84777651068393,7.65526501983796,0,0,0.414415513436035,0,2.00068208423871,0,0.207970861530807,0.713715955188647,0.630809660135739,1.05427273493442,0,2.27407504055985,0,1.32845119707087,1.47495334833363,0.260650843404249,0,0,0,0,0.106727557803444,0,0,0.30239029332968,0,0.153461973288062,0,0,0,0.160853921143607,0,1.23367755042124,0.710246901252508,0.9033987161519,1.03850885836724,0.813472649219715,0.241718899183244,0.200506470303285,0.184161977871793,0.229628896329213,0.364182336013434,0.393373244878272,0,0.693138033939733,0,0,0.633309773357254,1.13733384070897,0,5.18198198645135,0,0.541892875087706,0.501689773854853,1.01950509218015,0,0.671624264166535,0.219259876645935,0.522870902049801,0.512900250232778,0,0,0.206082023295445,2.38080608527693,1.07262349896764,0,0.650060246036521,1.6068392984416,0,1.54048617114644,0.767518373630648,1.51620229732984,0.322260734604821,0.725083469571143,0.852266274161009,0.178064071293475,0.330569830721956,0.576570202095319,0,0,0,0,0,0,1.06461206063404,0,0.18532421910392,0.429374660225974,0,0.316379424718726,0,0,0,0.318203247925937,0.78494864019923,0.179872457583315,1.09814811894422,1.06031162111118,0,0,0.421258456238981,0.48763373908959,0,1.05650146756755,0.272999822815972,0.424216295861138,0,0.551365343546124,0,0,0,0.655894752046633,0,0.92947049429925,1.12678241012897,0.717056761020258,0,0,0.354761064070598,0,0,0,0.699869440489966,0.48111056362756,0.670302275535787,0,0,0,0,0,0,0,0.764637207142375,0,0,0,0,0,0,1.92283328029452,1.92495971052672,1.96032172784825,0.929015875628594,0.577076851905779,1.84968792705877,2.55082036366116,3.99158742865633,1.34053759092657,2.32840940996271,1.94773164164733,2.52717460302113,1.14117339516596,3.29027781123349,0,2.70866844482565,3.69352572738509,4.84319297258514,1.27753871307098,3.77855879231341,1.53620382154229,0.447352215784832,1.00109485027145,0.976940477010201,2.78406173895242,0,0.270455678475983,3.66379164797602,1.4098700508785,0.748562161632879,0,1.57768678274367,0.66866030566487,1.70481688083848,0.23874448473769,0,0.307160702099232,3.97659059106519,4.78276015795743,0,1.15362711958732,1.47787785689595,0.19924798825107,0.276283915531148,0.251932747854276,0.409074730008619,0,0,0.179736702294654,0,1.02314474045374,0.0986434056369336,0,0,3.87733098438087,2.13366625772258,3.99227596002388,0.520855522170466,0.524759999977174,0,0.341380344856499,2.03402920234213,3.07303986298317,7.92909758455369,3.79085997398231,3.29887490373255,0,2.17073589525734,3.05163472634166,1.43753037910592,0.886642856860642,5.48463492884931,0.435753854075961,0,0,0.227884111694002,0.23056390438806,0.359030577639089,0,0,0,0,3.06579894587209,1.09886179476517,1.82832850090172,0.902382642468723,2.54881294613061,0.671286347903371,1.89753732724185,1.11255605286265,2.74297483886435,0.489698424477443,0,0,0,0.0884575645033392,0.611030144933625,0,0.494255755786011,1.04421949505455,0.404406797884062,1.60515529459758,2.81117334870407,4.74382451960732,0.391329237864179,0,0.394584402849391,0,24.4858209304392,0,0.150323419414493,0.518440956986236,0,0.330991955875499,0.627865836814451,1.19472429772959,0,0.832048038078832,1.90915712168644,0.489961987071888,0.783532859223623,0,1.20390222730132,0.967563312890852,0.584714536689484,0.821154570532092,0.484945082442097,0.0882561266915003,0,0.959293472527256,2.18586072873289,0.633107959558787,2.15106521008283,0.0801588202515337,0,1.19885765749278,0.432271251462318,0.80175617316141,3.43189995723929,0.14405479798815,0,0.471388069233591,0.815425236441684,0.313808538937,1.12198039399954,0.288950589901519,2.40168115483916,1.9166753044879,0,0.859530882839914,1.05154941711726,0.279282401272254,0.458320848023367,0,0,0,0,0.268733889946905,0,0,1.02418136999391,1.2362378757175,0.808842526250219,0.295282444544246,0.592713324460491,3.97614844904652,4.494712401682,2.41129722697529,1.92555211236127,3.73896304226267,0.2249738915515,0.77380195455795,0.728994679896296,0,0,0.262272940674991,0,0,1.72723677587501,0.714695326373367,0,1.27134268827375,0,0,0.653174720218818,2.39460383124975,0.410462603746695,0.170388021785422,0.79318464064088,0,0,1.55139547633861,5.02483886622222,0.342173675768659,0,0,0,0,0,0.395223263795889,1.46151118057075,0,0,0,0,0,0.314108192500469,7.08854543973589,4.02686674176478,3.3801551290755,0.573409195690071,2.10765197920019,0.310482014706917,2.76697269872462,1.49976489554528,0.151649117541648,0.285465333544967,0.235265819698172,9.36669811613763,4.49255188693558,0.149254802886874,0.233713309847224,0.554805861502613,0.568209015825267,0.50313580350515,0,0,0.151230923763239,0.466311601748341,0.591420599958536,0.477890301491107,0,0.465788870628778,0.829412415681711,0.53168342911599,0.521745061811734,0.150257608997218,0.380805212168795,2.03435366602331,0.363697318405119,0.429642228169954,0,0.398095888698616,8.40058305792623,0.686791410365586,0.673498977531838,0,0.57785949122191,0.214441591374926,0.521988583930423,0.906823702049089,0.694567422971502,1.46842022703881,2.14906609297785,0,0.877136198314828,1.59020231351293,0.38582807654183,1.01365464391844,0.256241518587947,0.690860683462397,3.03859956177382,5.94511275452442,0.194860308839388,0.132864840313363,0.490696182767533,3.60370833731054,0.983091635014877,0.422624246717254,1.19992437512958,1.38699248602383,0.344429959321631,2.27006381426734,1.28874165176289,0,0.622077260032973,0.383683113910955,0.323474434190045,2.51625506969434,0.873677105536111,1.52759276958623,6.1646726829488,2.60265104943905,2.23457967189298,0.636008701306837,0.70975570501128,0,0.705351887381368,0,0.321146125482298,1.41696576325585,7.18352365757181,20.101403695594,22.4343809637329,0.899044282034833,6.13607453401034,9.99385941814081,0.196295437002051,0,0,0.231051332300676,1.1441462864015,0.690359926060101,0.596748666348824,0.300841313397029,1.81534561833168,0,1.04762677792569,1.63771917510097,0.147856086217045,0.472763092328763,6.24862478891078,5.1671699125296,0.317079050969534,10.9394961803644,0.548257766857182,0,0.527613733078862,0.127762427639595,8.0355275381743,3.36283722218824,0,0,0,1.15233987555779,0.171488009437418,0.883606528698812,0.657727735628491,0.354581522651905,0.778619813244484,0.078493092850514,0.471346769748006,0.280272163313789,0,0.431855182437243,0,0.0714765441766563,2.3702041759909,1.62737995515375,0.347716544605159,0,0,0.17071847709395,0,0,0,0.340853619036631,1.27016115057279,1.3746412112643,0.62041277132864,0,0.447421727191169,0.196300467230486,0,0,0.102662806856247,1.1598144313382,3.88568794447312,4.91272873270422,7.36117868097062,1.78380136166353,0.5647304101948,3.18827498561744,3.17021971490014,0.0771741581079447,0.874238242015829,1.88126918544609,0.245148321753905,0,4.90771167787363,2.0793248022896,2.5359343655004,1.35941691750254,0,0.128915775947154,0.0999411559249289,0,0,0.320965466756673,1.46067277649303,0,3.72682916193773,0.631086248772738,1.29183831362738,28.7991455624649,2.1161073620616,1.11598505450025,0,0,1.38783067318587,2.84090487105608,1.26698501011437,1.01988829741982,1.06886962106224,0.551369397209069,1.50424523575425,0.833565680400634,3.21556956187414,0,2.68925789240928,0,0.952257725854961,1.87307838524418,0.806971285846153,1.90624166387043,0,1.0105859447911,0.217716747896961,1.02669990325584,0.202056159043763,0,1.99596213927608,0.732629417498771,1.06727345877715,1.9307228228694,0.179650404213174,0,0,2.03448089157869,0,0.402547587182052,0 | |||
|short_description=p1@BC040585 | |||
}} |
Revision as of 17:10, 10 January 2014
Short description: | p1@BC040585 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_BC040585_5end |
Coexpression cluster: | C3961_duodenum_occipital_Neurons_merkel_mesenchymal_temporal_parietal |
Association with transcript: | 55bp_to_BC040585_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 3.74e-07 | 6 |
neuroblast | 3.74e-07 | 6 |
electrically signaling cell | 3.74e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 9.55e-19 | 81 |
nervous system | 2.53e-18 | 89 |
neural tube | 9.45e-15 | 56 |
neural rod | 9.45e-15 | 56 |
future spinal cord | 9.45e-15 | 56 |
neural keel | 9.45e-15 | 56 |
brain grey matter | 3.14e-14 | 34 |
gray matter | 3.14e-14 | 34 |
brain | 3.62e-13 | 68 |
future brain | 3.62e-13 | 68 |
regional part of forebrain | 5.35e-13 | 41 |
forebrain | 5.35e-13 | 41 |
anterior neural tube | 5.35e-13 | 41 |
future forebrain | 5.35e-13 | 41 |
regional part of telencephalon | 8.84e-13 | 32 |
regional part of nervous system | 1.01e-12 | 53 |
regional part of brain | 1.01e-12 | 53 |
neurectoderm | 1.67e-12 | 86 |
regional part of cerebral cortex | 5.73e-12 | 22 |
cerebral cortex | 6.77e-12 | 25 |
pallium | 6.77e-12 | 25 |
telencephalon | 1.38e-11 | 34 |
cerebral hemisphere | 2.27e-11 | 32 |
neural plate | 3.48e-11 | 82 |
presumptive neural plate | 3.48e-11 | 82 |
pre-chordal neural plate | 5.05e-11 | 61 |
neocortex | 3.59e-10 | 20 |
ectoderm-derived structure | 3.71e-10 | 171 |
ectoderm | 3.71e-10 | 171 |
presumptive ectoderm | 3.71e-10 | 171 |
ecto-epithelium | 2.42e-09 | 104 |
organ system subdivision | 6.90e-08 | 223 |
structure with developmental contribution from neural crest | 1.59e-07 | 132 |
Ontology term | p-value | n |
---|---|---|
hematologic cancer | 2.71e-14 | 51 |
immune system cancer | 2.71e-14 | 51 |
leukemia | 4.17e-12 | 39 |
cancer | 5.55e-12 | 235 |
disease of cellular proliferation | 3.25e-11 | 239 |
myeloid leukemia | 1.10e-10 | 31 |
organ system cancer | 6.17e-10 | 137 |