FFCP PHASE1:Hg19::chr1:151043266..151043295,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=126626 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=28441 | |||
|TSSclassifier=strong | |||
|UniProt=B4DXA3 | |||
|association_with_transcript=0bp_to_ENST00000446567,ENST00000486076_5end | |||
|description=CAGE_peak_2_at_GABPB2_5end | |||
|id=chr1:151043266..151043295,+ | |||
|ontology_enrichment_celltype=CL:0000791!1.63e-09!18;CL:0000789!1.63e-09!18;CL:0002420!1.63e-09!18;CL:0002419!1.63e-09!18;CL:0000790!1.63e-09!18;CL:0000084!2.10e-09!25;CL:0000827!2.10e-09!25;CL:0000838!6.40e-09!52;CL:0000542!1.25e-08!53;CL:0000051!1.25e-08!53;CL:0000037!5.54e-07!172;CL:0000566!5.54e-07!172 | |||
|ontology_enrichment_celltype_v019=CL:0000791;1.63e-10;18!CL:0000789;1.63e-10;18!CL:0002419;1.63e-10;18!CL:0000084;3.25e-10;25!CL:0000625;7.73e-07;11 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,2.17e-10,18;CL:0000789,2.17e-10,18;CL:0002420,2.17e-10,18;CL:0002419,2.17e-10,18;CL:0000790,2.17e-10,18;CL:0000084,5.89e-10,25;CL:0000827,5.89e-10,25;CL:0000838,1.59e-08,52;CL:0000542,4.54e-08,53;CL:0000051,4.54e-08,53;CL:0000037,6.96e-07,168;CL:0000625,9.83e-07,11 | |||
|ontology_enrichment_development_v019=CL:0000790;1.63e-10;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!5.94e-34!115;UBERON:0001049!1.12e-11!57;UBERON:0005068!1.12e-11!57;UBERON:0006241!1.12e-11!57;UBERON:0007135!1.12e-11!57;UBERON:0002616!5.54e-10!59;UBERON:0003080!8.25e-10!42;UBERON:0002780!1.66e-09!41;UBERON:0001890!1.66e-09!41;UBERON:0006240!1.66e-09!41;UBERON:0000955!1.02e-08!69;UBERON:0006238!1.02e-08!69;UBERON:0001017!7.46e-08!82;UBERON:0002020!2.67e-07!34;UBERON:0003528!2.67e-07!34;UBERON:0000073!3.12e-07!94;UBERON:0001016!3.12e-07!94;UBERON:0005743!3.35e-07!86;UBERON:0001893!3.45e-07!34;UBERON:0002791!5.28e-07!33;UBERON:0003075!6.45e-07!86;UBERON:0007284!6.45e-07!86;UBERON:0002346!6.67e-07!90 | |||
|ontology_enrichment_uberon_v019=UBERON:0007023;1.10e-09;114 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,6.67e-36,114;UBERON:0001049,1.88e-12,56;UBERON:0005068,1.88e-12,56;UBERON:0006241,1.88e-12,56;UBERON:0007135,1.88e-12,56;UBERON:0000073,2.99e-11,53;UBERON:0002616,2.99e-11,53;UBERON:0002780,5.81e-10,41;UBERON:0001890,5.81e-10,41;UBERON:0003080,5.81e-10,41;UBERON:0006240,5.81e-10,41;UBERON:0000955,9.37e-09,68;UBERON:0006238,9.37e-09,68;UBERON:0001017,3.25e-08,81;UBERON:0001016,6.95e-08,89;UBERON:0003075,7.33e-08,82;UBERON:0007284,7.33e-08,82;UBERON:0002346,1.11e-07,86;UBERON:0003528,1.52e-07,34;UBERON:0002020,1.52e-07,34;UBERON:0001893,2.00e-07,34;UBERON:0002791,9.68e-07,32 | |||
|phase1_expression=1.2717486548939,1.07050261945492,1.69145284915165,3.00219895059391,0,0,0,0,2.08948502559871,0.245733936501509,0,0.436882744260345,0.263766978228454,1.60896258848061,0.662794751455832,0,1.20538905604795,0,0.975865597581014,0.246242116153576,0.408001382488506,0,0.286235987131057,0.684372125364421,0.502170558379211,1.37544130346312,1.64201178899891,0.787107813136792,2.75354993794233,4.60595277716655,1.70297735647684,0,0.30120591877825,0.369754010166788,2.16908161624845,0.426507697462265,2.34880351467878,3.32397245119126,3.20871115952227,1.30206522429511,1.34349284543955,1.29557466407592,1.54545340580512,1.59938062657521,0.377875943688809,0.970336244751265,0.464858073811369,0.411167888021826,0.309706370895104,1.43846196161075,1.2808035326455,0.47296445977717,0,0,0,0,0.272906150057846,0.449446968890169,0.918251677112708,2.24650318953266,1.27867425159808,0.329851300186716,0.797854630486527,0.426224750532694,0.290209238628584,0.56738522469114,0,0.251248665256743,0.521482918420201,0.217188844705117,2.42159801053347,0.736555271975129,0.316462387440884,2.32380814943136,2.76385589954557,1.25795187305026,1.23561494261145,1.95229960693958,1.92870704036496,2.56511469367124,2.18808344918999,2.55729815270488,0,3.27683166757279,0.889509253863555,2.13365111283254,0.800791974072025,4.59801951963587,1.32208974556972,0.954053754535364,2.84606484554724,2.93618594685469,3.82273228125229,0,0,0.790152254325231,7.08155172409799,3.93010762749165,4.5232329779892,2.67498392625085,8.47397893247335,10.4158517261641,5.84480185223734,4.01077644786625,3.82987679717288,3.98761010250518,2.97884250141517,3.5865569523189,2.60118695119756,4.27538551969558,2.48715016007264,4.63684937176084,9.04548035288569,11.2367147797679,6.27213142829861,3.17266159553185,4.98186641682498,5.84166657320471,7.08455137654608,5.73417745783374,6.51083453856419,4.75226022224187,3.01150238155546,2.94369205655162,1.24930726552346,4.2619905367923,3.28451198768419,5.64498881029251,4.81392352410313,7.96534221355394,2.43806866313962,0,1.02290049474824,1.44575660953827,0,1.44846518960824,0,1.94653948121054,0.850813354476611,0.443458794925128,1.22968699970376,3.92937226493138,1.09288586487763,1.48313777113772,1.62273696827342,1.0447784237956,0.664789802594326,1.90792499444274,2.28797964312051,2.22874500797739,0.39752481473341,0.860234595106124,0.694281003215189,0,1.25849830862972,0.275118041940067,0.417989933073621,0.775250277507987,0.71153252537342,1.00416183829401,0,0,0.488124115096339,0.367663080345869,0,0.625098097988558,0.22452937262617,1.0135033243499,0,0,0.549605231791222,0,0,0,1.98788780678127,1.13967460498122,1.45650098894541,0.860509862246441,1.41867352879343,1.12135520028461,0,0.49333509683432,0.933633106199299,0.808264032418128,0.490385709340376,0.756787138224657,0.576175924479999,0.70296429550139,0.624320153660641,0,0.149448680551801,0.822041490506354,0.323745888736263,0.561803226808994,1.63323337003915,1.71968044236475,2.37649296704261,0,0.741800787835671,0.910161361938026,2.15585442544872,1.17835279767846,1.25118519871964,1.10825646193673,2.63386572528503,1.5324389789951,1.20190447125277,1.24775401476023,1.25572744982203,1.92201649936711,1.69545520927649,1.50045548042201,0.515262646192195,0.772921620136887,1.8611685633159,1.18143432568886,0.779496041289589,1.26216887122057,1.19664868234989,1.45481451136931,1.42003837006646,0.503760491138201,1.18692414617341,0.773043412653187,0.818238361772504,0.860413786167011,0.487894824518382,0.265059536642971,0.232387885739037,1.0366105501537,0.504641701751257,0.72995471815166,0,0.643240938192885,0,2.3218396401599,0,1.0647612003586,0.842923450390509,0.723033089650446,1.43382164552112,1.52515610864684,1.89816495288877,1.34831308160164,0.784885860501384,1.15424147083917,0,1.40241773803446,0.8231480226628,0,2.53510069643662,0,1.77236972004421,3.5317047953172,0.983907508344908,0.514703430895577,0.548751427043128,0,0.804231779293047,1.38882667737794,1.62904152655162,0,0,0.463721619900307,0.234817388471643,0.288732895522148,0.462985512576611,0.951270761172991,3.95102198979638,3.43394464837949,0.738651018262192,1.17002132569619,1.0404181360211,0.93733833986777,0.335964256397719,1.13420077793909,0.716468181622786,0.581267877027924,0,3.94130590316755,1.76096868026452,2.07328115540772,2.16179930125442,2.14612136824846,0.444485260045183,1.14596527667483,0,0,0.616964956219941,0,0,0.448524337381443,0,1.7601188597028,1.03417372606222,0,2.535908257668,0.797814349754612,1.04007436911366,0.257207374262142,0,1.0656887160644,1.42977993658148,0.542621605391443,0,0.977208552881205,2.13235169245527,0,0.301439377059586,0,0.599837947092342,0,1.00451418286425,4.21667878966063,1.91699884393266,1.14861935834114,1.42636905040718,1.59259437334337,1.84928690295345,0.358121926479791,2.12961773587702,6.30498432646167,8.19384784466166,5.90377966886842,0.508189248444927,2.60279707715243,0,0.670065061337395,1.27587750330633,0.749007023947182,0,0,1.59498939234882,1.00034104211935,0.271265023699736,0.831883446123229,1.96271887676878,1.26161932027148,1.17141414992713,0.902838299183157,0,1.03473071292505,0,0.368738337083406,2.5196248195744,0,0.343143423810856,5.58273670531796,5.60856922128404,4.16237475433433,0.909382714338778,0,1.81434175997808,0.992431231275107,0.153461973288062,2.52594084989766,1.40953064181271,1.02341449813341,0.965123526861645,0,0.462629081407967,0.532685175939381,0.98552587216571,0.519254429183621,0.581051892299796,0.725156697549733,0.802025881213139,0.644566922551274,1.03333003348146,1.27463817604702,0.786746489756545,0,0.770153371044148,0,0,0.527758144464379,0,0.170093705276516,0.431831832204279,0,0,0,0,0,0.895499018888713,13.8133722286939,10.7188534920209,0.769350375349168,0.328014645699706,0,3.50339439602256,1.73981983154852,2.14524699793529,2.29706215198469,0,0,1.06337790121334,0.616194468458578,1.07452572308291,0.413509717453592,1.50388342815583,0.725083469571143,0.596586391912706,0.801288320820636,1.15699440752685,1.34533047155574,0.638063562472921,1.92199783625545,0.464845549297286,0.31481234683064,0,0.308033580176089,0,0,0.55597265731176,0,1.48863347743867,1.2655176988749,2.09693213316207,0.511795582622668,0,0.95460974377781,0,0.719489830333259,0.823611089208164,0.706874414074119,0.202182481573316,0,0,0,0.487426979262569,0,0.545999645631943,2.54529777516683,0,1.65409603063837,0,0,0,0.655894752046633,0,0.6196469961995,0,0.860468113224309,0.589494246078727,0.35667105148125,0.354761064070598,2.11107635297664,0.987884678879706,0.379473173765715,1.04980416073495,0.48111056362756,0.670302275535787,0,2.82431402330337,0,0,0,0,2.53723804616085,3.82318603571188,5.12682468456746,4.52640373369799,3.29089818468955,1.29694662238543,1.08006287447623,2.37937552888281,0.534120355637366,0.962479855263359,0.735120647943095,0.743212700502875,2.74111504655245,1.4939787103167,2.07254154547469,0.59873811429845,1.53204296105893,1.90506224451495,2.27235358192189,2.24637742490767,1.36940807419915,2.35019843659535,2.50634477090067,1.35433422241283,0.481764225311099,0.80719882876419,3.83261613921294,0.343505344755765,2.15068535015921,4.47352215784832,4.33807768450962,1.9538809540204,0.835218521685727,0,1.6227340708559,0.66614393599564,1.4098700508785,1.8714054040822,3.95572084034114,0.970884173996107,3.12041475976939,0,2.3874448473769,0.593929361665277,3.07160702099232,1.9882952955326,5.06409899077846,0.890469640183247,1.6480387422676,0.63337622438398,3.18796781201712,4.97311047956066,0.251932747854276,1.43176155503017,0.369254416383208,1.86623752597084,2.42644548097782,3.04335996948536,3.06943422136123,3.55116260292961,2.3948309234694,1.11136990144637,1.93866549219044,1.94813006139888,1.99613798001194,4.16684417736373,5.24759999977174,2.89999830173917,2.16207551742449,1.01701460117107,1.18193840883968,0,0.874813840149763,1.04174996959975,1.77148277162768,3.61789315876224,1.52581736317083,5.08664595683633,3.84211904639612,2.19385397153973,1.30726156222788,2.37020365273626,3.84751292518985,0.91153644677601,1.1528195219403,0.897576444097721,0.651884231532048,0.638002319463839,0.915975934018623,0.533034776018635,4.08773192782946,1.09886179476517,2.32696354660219,1.80476528493745,2.15668787749514,1.34257269580674,1.13852239634511,2.2251121057253,0.632994193584081,1.14262965711403,0.141353071433941,1.29833183845255,4.97630965539252,3.00755719311353,1.83309043480088,0.593042257361244,0.988511511572023,0.626531697032732,4.9876838405701,3.21031058919516,1.40558667435203,1.64209310294099,1.9566461893209,0.485560759068186,5.91876604274086,4.83962864194656,1.53036380815245,2.84339608328196,1.35291077473043,0.72581733978073,1.99396161812156,0.330991955875499,0.941798755221676,0,0.284609546029793,0.277349346026277,1.04135843001079,3.23374911467446,2.69883540399248,4.01871336956669,0.859930162358083,2.51566461351621,3.28901926887835,2.05288642633023,3.68558262655994,0.794305140223502,3.38971111170799,0.137041924646751,0.596143835108969,1.96263467463224,1.36885967914362,0.480952921509202,3.20179492109029,1.79828648623917,0.72045208577053,0.229073192331831,3.43189995723929,1.1524383839052,0.621262677827163,5.1852687615695,0,0.209205692624666,0.815985741090574,1.15580235960608,1.80126086612937,7.11907970238364,5.10986352267889,2.57859264851974,0.788662062837943,7.26134243307861,3.89572720819862,4.30723814746088,0.998395002494955,2.57535628881943,2.00854311697685,2.68733889946905,0.720599767084807,3.49487848582361,0.0787831823072236,0.0824158583811665,0,0.295282444544246,1.52411997718412,0.795229689809303,5.31193283835145,0,0.137539436597234,0.415440338029185,1.349843349309,0,1.51873891645062,0.335434687599266,2.20655980437755,1.83591058472493,0.633602019116439,0.717149357331379,2.87872795979168,0.714695326373367,0,1.017074150619,0.542999601753713,0,0.979762080328227,0,0.82092520749339,1.87426823963964,1.35974509824151,1.02586563574658,0,3.10279095267721,4.62814106099415,1.02652102730598,0,0.854299300541557,1.57204305099666,2.48543433208317,1.9846640872478,0.592834895693833,3.16660755790329,5.74507131993164,3.26410682021684,2.506898940227,3.67614692116154,3.27872630709804,1.25643277000187,4.43034089983493,3.66078794705889,3.8809188519015,2.86704597845036,3.54972964917927,3.53949496765886,2.62862406378839,0.624902039810533,1.21319294033318,0.570930667089935,0.470531639396343,5.1516839638757,2.02889440055155,0.447764408660622,0.934853239388898,0,0.189403005275089,0.754703705257725,2.66943366478961,0.686520205190771,0.756154618816195,0.466311601748341,0.591420599958536,0,0,0.310525913752519,0.414706207840855,0.265841714557995,1.04349012362347,0.450772826991655,0,1.22061219961398,0.545545977607678,0.214821114084977,0.464033759878494,0,1.60011105865261,1.03018711554838,0.673498977531838,3.78554694685953,0.770479321629213,0.643324774124777,0.260994291965212,0.680117776536817,1.15761237161917,1.46842022703881,0.537266523244462,0.926404341482917,1.31570429747224,0.883445729729405,1.54331230616732,0.675769762612291,0.76872455576384,0.345430341731199,1.51929978088691,6.08337119067615,1.55888247071511,1.59437808376036,1.14495775979091,0.655219697692825,0,1.47918486351039,1.19992437512958,3.52082707990665,0.172214979660816,2.83757976783418,3.68211900503681,0.419638523158333,0.622077260032973,1.40683808434017,0.970423302570136,0.629063767423586,0.54604819096007,0.33946505990805,8.715571724169,1.48722917110803,1.67593475391973,1.27201740261367,0.788617450012533,1.60114149657094,0.705351887381368,1.2249819094128,1.99110597799025,1.41696576325585,4.94864963077169,2.66651273512982,1.51243017733031,2.6971328461045,2.74508597574147,8.56616521554926,1.37406805901436,0.707818340086442,2.01771458373847,1.84841065840541,1.90691047733584,0.690359926060101,2.18807844327902,4.13656805920915,0.40341013740704,3.12605604493237,0.523813388962845,1.96526301012116,1.03499260351932,2.22874029240702,2.34323429584154,3.72036233702131,1.9024743058172,0.546974809018219,1.09651553371436,1.98484471355718,0.879356221798103,0.511049710558381,4.28561468702629,5.38053955550118,2.42786241694653,5.46389259243114,1.24183318227694,0.691403925334676,2.40083213212386,1.69924332442079,3.15709313101676,1.30013224972365,1.22354542081276,3.21821680687107,3.45654297815204,2.80272163313789,0.913158720509496,1.51149313853035,0,4.14563956224607,0.94808167039636,0.23248285073625,0.869291361512897,1.60342272946051,0,0.6828739083758,0.691259661814092,1.29068207646083,1.30165200803622,1.78948149994231,2.9637093513365,1.60374807980835,1.24082554265728,2.8666168169323,0.782988022584546,1.3741032706134,0.975343399858155,5.82685953469105,1.23195368227496,0,1.94284397223656,0.701818390386317,0.596852325484105,2.14056163399623,2.2589216407792,0.219881033490858,0.150962843566674,1.62065732026684,2.62271472604749,0.940634592723046,6.12870804384764,0.235676547101626,5.88925401344836,3.26751040359795,2.5359343655004,1.18948980281472,2.91350145737546,1.61144719933943,0.999411559249289,3.21397089490184,3.88184358887261,1.7653100671617,2.19100916473955,2.2936464170227,7.88367707332982,1.41994405973866,1.69978725477287,2.18175345170189,4.2322147241232,0.743990036333503,1.38652688589425,0.865253124247578,0.126166424835079,0.109265571963696,0.253397002022874,0.407955318967927,0,0.735159196278759,2.25636785363138,2.80381183407486,5.09131847296739,2.48750831837634,7.65404169378025,4.26467963801962,2.85677317756488,6.91101335245265,7.69726457268638,0.672791175483681,2.5458863311266,3.03175783437329,4.13661821004227,2.05339980651169,4.17582728690443,2.86888821570705,1.33064142618405,1.05824249194267,2.34800160930974,0,0.449126010532934,4.69281884806909,3.17827754875453,0.813792356631477,9.98635161278269,3.8242020782295,0.961705476909699 | |||
|short_description=p2@GABPB2 | |||
}} |
Revision as of 20:48, 10 January 2014
Short description: | p2@GABPB2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_GABPB2_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000446567, ENST00000486076_5end |
EntrezGene: | GABPB2 |
HGNC: | 28441 |
UniProt: | B4DXA3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 2.17e-10 | 18 |
alpha-beta T cell | 2.17e-10 | 18 |
immature T cell | 2.17e-10 | 18 |
mature T cell | 2.17e-10 | 18 |
immature alpha-beta T cell | 2.17e-10 | 18 |
T cell | 5.89e-10 | 25 |
pro-T cell | 5.89e-10 | 25 |
lymphoid lineage restricted progenitor cell | 1.59e-08 | 52 |
lymphocyte | 4.54e-08 | 53 |
common lymphoid progenitor | 4.54e-08 | 53 |
hematopoietic stem cell | 6.96e-07 | 168 |
CD8-positive, alpha-beta T cell | 9.83e-07 | 11 |
Ontology term | p-value | n |
---|---|---|
adult organism | 6.67e-36 | 114 |
neural tube | 1.88e-12 | 56 |
neural rod | 1.88e-12 | 56 |
future spinal cord | 1.88e-12 | 56 |
neural keel | 1.88e-12 | 56 |
regional part of nervous system | 2.99e-11 | 53 |
regional part of brain | 2.99e-11 | 53 |
regional part of forebrain | 5.81e-10 | 41 |
forebrain | 5.81e-10 | 41 |
anterior neural tube | 5.81e-10 | 41 |
future forebrain | 5.81e-10 | 41 |
brain | 9.37e-09 | 68 |
future brain | 9.37e-09 | 68 |
central nervous system | 3.25e-08 | 81 |
nervous system | 6.95e-08 | 89 |
neural plate | 7.33e-08 | 82 |
presumptive neural plate | 7.33e-08 | 82 |
neurectoderm | 1.11e-07 | 86 |
brain grey matter | 1.52e-07 | 34 |
gray matter | 1.52e-07 | 34 |
telencephalon | 2.00e-07 | 34 |
regional part of telencephalon | 9.68e-07 | 32 |