FFCP PHASE1:Hg19::chr20:19193331..19193419,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=57419 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10977 | |||
|TSSclassifier=strong | |||
|UniProt=Q9HC58 | |||
|association_with_transcript=41bp_to_ENST00000328041,NM_020689,uc002wrl.2_5end | |||
|coexpression_cluster_id=C64 | |||
|description=CAGE_peak_1_at_SLC24A3_5end | |||
|id=chr20:19193331..19193419,+ | |||
|ontology_enrichment_celltype=CL:0000763!4.69e-10!112;CL:0000049!4.69e-10!112;CL:0002057!2.89e-09!42;CL:0000766!2.14e-08!76;CL:0000860!7.86e-08!45 | |||
|ontology_enrichment_celltype_v019=CL:0000860;8.76e-12;33!CL:0002057;8.76e-12;33!CL:0000097;1.56e-07;5!CL:0000473;2.42e-07;39!CL:0000234;2.42e-07;39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000763,1.11e-10,108;CL:0000049,1.11e-10,108;CL:0000766,9.41e-09,72;CL:0000860,1.95e-08,42;CL:0002057,1.95e-08,42;CL:0000097,1.60e-07,5;CL:0002028,1.60e-07,5;CL:0000839,2.23e-07,66 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!5.02e-36!115;UBERON:0001049!1.67e-15!57;UBERON:0005068!1.67e-15!57;UBERON:0006241!1.67e-15!57;UBERON:0007135!1.67e-15!57;UBERON:0003080!5.35e-14!42;UBERON:0002780!1.12e-13!41;UBERON:0001890!1.12e-13!41;UBERON:0006240!1.12e-13!41;UBERON:0002616!1.24e-13!59;UBERON:0001017!9.94e-13!82;UBERON:0001893!1.76e-12!34;UBERON:0002020!4.10e-12!34;UBERON:0003528!4.10e-12!34;UBERON:0002791!5.01e-12!33;UBERON:0001869!5.74e-12!32;UBERON:0005743!6.51e-12!86;UBERON:0000955!1.48e-11!69;UBERON:0006238!1.48e-11!69;UBERON:0000073!2.15e-11!94;UBERON:0001016!2.15e-11!94;UBERON:0002346!2.80e-11!90;UBERON:0002619!4.30e-11!22;UBERON:0001950!1.15e-09!20;UBERON:0003075!2.09e-09!86;UBERON:0007284!2.09e-09!86;UBERON:0000956!1.04e-08!25;UBERON:0000203!1.04e-08!25;UBERON:0002390!1.31e-08!102;UBERON:0003061!1.31e-08!102;UBERON:0002193!2.22e-07!112;UBERON:0000178!2.51e-07!15;UBERON:0000179!2.51e-07!15;UBERON:0000463!2.51e-07!15;UBERON:0003056!5.74e-07!61;UBERON:0000924!8.11e-07!173;UBERON:0006601!8.11e-07!173 | |||
|ontology_enrichment_uberon_v019=UBERON:0001869;1.46e-12;32!UBERON:0002619;2.88e-12;22!UBERON:0001893;8.32e-12;34!UBERON:0002780;1.06e-11;41!UBERON:0001890;1.06e-11;41!UBERON:0002791;1.30e-11;32!UBERON:0003528;4.39e-11;34!UBERON:0002020;4.39e-11;34!UBERON:0001950;2.55e-10;20!UBERON:0000956;3.85e-10;25!UBERON:0000203;3.85e-10;25!UBERON:0007023;4.69e-08;114!UBERON:0000073;1.30e-07;53!UBERON:0002616;1.30e-07;53!UBERON:0002050;5.26e-07;5!UBERON:0005423;5.26e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,4.22e-31,114;UBERON:0002780,2.32e-14,41;UBERON:0001890,2.32e-14,41;UBERON:0003080,2.32e-14,41;UBERON:0006240,2.32e-14,41;UBERON:0001049,4.55e-14,56;UBERON:0005068,4.55e-14,56;UBERON:0006241,4.55e-14,56;UBERON:0007135,4.55e-14,56;UBERON:0001869,8.15e-14,32;UBERON:0001893,1.00e-13,34;UBERON:0002791,1.54e-12,32;UBERON:0000073,1.85e-12,53;UBERON:0002616,1.85e-12,53;UBERON:0002619,2.23e-12,22;UBERON:0002346,2.23e-12,86;UBERON:0003528,2.38e-12,34;UBERON:0002020,2.38e-12,34;UBERON:0001017,5.13e-12,81;UBERON:0001016,6.36e-12,89;UBERON:0001950,1.96e-10,20;UBERON:0000956,3.09e-10,25;UBERON:0000203,3.09e-10,25;UBERON:0000955,3.72e-10,68;UBERON:0006238,3.72e-10,68;UBERON:0003075,6.41e-10,82;UBERON:0007284,6.41e-10,82;UBERON:0003056,3.41e-08,61;UBERON:0002390,3.77e-08,98;UBERON:0003061,3.77e-08,98;UBERON:0002193,8.22e-07,108 | |||
|phase1_expression=0.363356758541113,0.428201047781966,0.704772020479856,1.0007329835313,1.34088328328186,3.48935409640147,2.53299878168311,0,0.261185628199839,0,0,0.218441372130172,0.527533956456907,0,0,0,0.602694528023977,0.730310090387373,1.95173119516203,0,0.204000691244253,0,0,0,0,0,0,0,10.2274711980715,0.383829398097213,0.928896739896456,0,0,0,0,0,2.34880351467878,0,0.200544447470142,0.434021741431704,0.223915474239924,0,0,1.01778767145695,3.40088349319928,3.88134497900506,1.85943229524548,6.16751832032739,6.50383378879718,1.43846196161075,2.30544635876191,0.945928919554341,0.689491361473237,1.93645405075148,2.70852973188684,0.941211697713023,5.18521685109907,4.71919317334678,1.53041946185451,5.45579346029359,3.19668562899521,1.31940520074686,2.99195486432448,2.13112375266347,0.870627715885752,4.53908179752912,5.60540024096017,4.52247597462138,6.77927793946262,4.56096573880745,0,1.47311054395026,2.21523671208619,0,0.212604299965044,0,0.112328631146495,0.300353785683013,0,0.285012743741249,0,0,0,0.546138611262131,0,0,0,0,0,0,0,0,0,7.93027971474155,8.96813700770458,3.16060901730092,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113309342697566,0,0,0.253019692019503,0,0,0,0,0,0,0,0,0.201606743224732,0,0,0,0,0.12786256184353,0,0,0.144846518960824,0,0,0,0,0,2.68507104770311,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.9534125230819,3.87780264148325,0,0,0,0,0,0.354668382198357,0,0,0.49333509683432,1.55605517699883,0,0,0.454072282934794,1.15235184896,0,0.312160076830321,0.570471821544449,0.149448680551801,0,0.485618833104395,0.561803226808994,0,0.245668634623536,0.516628905878827,1.18800285728205,0.741800787835671,0,0.718618141816238,0.841680569770331,0.500474079487857,0.554128230968366,0,0,0.150238058906597,0.113432183160021,0.179389635688862,0.427114777637135,0,0,0,0.257640540045629,0,0,0,0,0,0,1.06502877754984,0.503760491138201,0.169560592310488,0,0,0,0.121973706129595,0,0.232387885739037,0.10366105501537,0,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.8231480226628,0,0,0,0,0,0.614942192715568,0,0.219500570817251,0,0.100528972411631,0,0,2.07986957055916,0,0,0.117408694235822,0,0,0,13.4334747653077,14.5942647556128,0,0.234004265139238,0.148631162288728,0,0.335964256397719,0,0,0,0,99.5179740549806,47.2820090651024,47.4781384588368,36.6064681679082,35.0953964925336,0,0,0,0,0,0,0,0.784917590417525,0.87192013766656,0.22001485746285,0.258543431515556,0,0,0,0,0,0,0,0,0.542621605391443,0,0.325736184293735,0,0,0.301439377059586,0,0.599837947092342,0,0.502257091432126,0,0,0,0,0,0,0,0,0,0,0,2.7950408664471,1.30139853857622,2.31986643833309,0,0,1.49801404789436,2.99161459204025,3.31532410748828,0,0,0,0.207970861530807,1.07057393278297,0.630809660135739,1.87426263988341,0,0,0,0.664225598535437,0.368738337083406,0,0.783204629850962,0,0.82707210449155,0.862856803274467,0.426910231213777,0,0,0,0,0.153461973288062,0,0,0.511707249066704,1.44768529029247,2.96836132889982,0,0.177561725313127,0,0,0,0.483437798366489,0.200506470303285,0,0.114814448164607,0,0,0,0,0,0,0,0,0,0.215915916102139,0,0,0,0,0,0,4.38519753291869,2.61435451024901,0,0,0,1.64865618636356,0,0,0,0.650060246036521,0,0.096670718292122,0,0,0.137836572484531,0.107420244868274,0,0.0852266274161009,0.0890320356467374,0,0,0,0,0,0,0,0,0,0,0,0.286249773483982,0,0,0.762520775695299,0,0,0.318203247925937,0,0.179872457583315,0.54907405947211,0.235624804691373,0.404364963146632,1.58510321173008,0,0,0,0,0.272999822815972,0,1.13008116620243,0,0,0.438450885253763,0,0,0.811641507850816,0.30982349809975,0.563391205064483,0,0.0982490410131212,0.7133421029625,0,0,0.329294892959902,0,0,0,0,0,0.753150406214233,0.86101074534246,0,1.33029046061003,0,5.58192370155386,3.82318603571188,7.97506062043828,5.47933083552915,3.29089818468955,4.53931317834902,1.62009431171434,8.72437693923697,0,0,0,0,0,0,0,0.199579371432817,2.10655907145603,1.2700414963433,0,2.24637742490767,0,0,15.038068625404,2.70866844482565,0,0,0,1.03051603426729,0,0,0,0.19538809540204,7.51696669517154,0,16.227340708559,8.99294313594114,0,0,0.586032717087576,0,0,0,0,0,0,1.9882952955326,4.78276015795743,0,0,0,4.18420775327246,1.93398740871803,0,0,0,1.86623752597084,0,0,1.02314474045374,1.97286811273867,4.7896618469388,0,4.84666373047609,1.02044907978036,13.9729658600836,14.5839546207731,2.97363999987065,1.44999915086959,0,0,0.236387681767936,0,0,2.08349993919951,5.31444831488303,2.65312164975897,0,1.43753037910592,3.54657142744257,1.53569778007781,0,0.278847488557207,5.77126938778478,3.07643550786903,0.23056390438806,0,0.651884231532048,1.27600463892768,1.09917112082235,2.13213910407454,0,0.156980256395025,0.332423363800313,0,0,0,0,0,0,0,0,0,8.95735737970654,1.85760885457012,5.49927130440263,0.296521128680622,0.494255755786011,1.35748534357092,2.02203398942031,0.802577647298789,8.43352004611221,0,0,0,1.57833761139756,4.83962864194656,5.20323694771833,0.63186579628488,0,0,0,0,0,0,0,0,0,0,0,3.84398670132466,0,0,0,0,2.71569246167574,0,4.29363407483012,0.274083849293502,0,2.02594547058812,0.586654148204409,0,7.043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| |||
|short_description=p1@SLC24A3 | |||
}} |
Revision as of 10:25, 21 January 2014
Short description: | p1@SLC24A3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SLC24A3_5end |
Coexpression cluster: | C64_Mast_chronic_acute_immature_chorionic_Basophils_Dendritic |
Association with transcript: | 41bp_to_ENST00000328041, NM_020689, uc002wrl.2_5end |
EntrezGene: | SLC24A3 |
HGNC: | 10977 |
UniProt: | Q9HC58 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid cell | 1.11e-10 | 108 |
common myeloid progenitor | 1.11e-10 | 108 |
myeloid leukocyte | 9.41e-09 | 72 |
classical monocyte | 1.95e-08 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.95e-08 | 42 |
mast cell | 1.60e-07 | 5 |
basophil mast progenitor cell | 1.60e-07 | 5 |
myeloid lineage restricted progenitor cell | 2.23e-07 | 66 |
Ontology term | p-value | n |
---|---|---|
adult organism | 4.22e-31 | 114 |
regional part of forebrain | 2.32e-14 | 41 |
forebrain | 2.32e-14 | 41 |
anterior neural tube | 2.32e-14 | 41 |
future forebrain | 2.32e-14 | 41 |
neural tube | 4.55e-14 | 56 |
neural rod | 4.55e-14 | 56 |
future spinal cord | 4.55e-14 | 56 |
neural keel | 4.55e-14 | 56 |
cerebral hemisphere | 8.15e-14 | 32 |
telencephalon | 1.00e-13 | 34 |
regional part of telencephalon | 1.54e-12 | 32 |
regional part of nervous system | 1.85e-12 | 53 |
regional part of brain | 1.85e-12 | 53 |
regional part of cerebral cortex | 2.23e-12 | 22 |
neurectoderm | 2.23e-12 | 86 |
brain grey matter | 2.38e-12 | 34 |
gray matter | 2.38e-12 | 34 |
central nervous system | 5.13e-12 | 81 |
nervous system | 6.36e-12 | 89 |
neocortex | 1.96e-10 | 20 |
cerebral cortex | 3.09e-10 | 25 |
pallium | 3.09e-10 | 25 |
brain | 3.72e-10 | 68 |
future brain | 3.72e-10 | 68 |
neural plate | 6.41e-10 | 82 |
presumptive neural plate | 6.41e-10 | 82 |
pre-chordal neural plate | 3.41e-08 | 61 |
hematopoietic system | 3.77e-08 | 98 |
blood island | 3.77e-08 | 98 |
hemolymphoid system | 8.22e-07 | 108 |