FFCP PHASE1:Hg19::chr21:27394184..27394203,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=not supported | |||
|DPIdataset=robust | |||
|EntrezGene=351 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=620 | |||
|TSSclassifier=strong | |||
|UniProt=P05067 | |||
|association_with_transcript=-12bp_to_M16765_5end | |||
|coexpression_cluster_id=C149 | |||
|description=CAGE_peak_35_at_APP_5end | |||
|id=chr21:27394184..27394203,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000222;2.71e-10;1 | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0007297;1.78e-18;2!UBERON:0005754;2.71e-10;1!UBERON:0005425;6.32e-10;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3571;6.32e-10;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3571,5.30e-10,1 | |||
|ontology_enrichment_uberon=UBERON:0007023!4.26e-25!115;UBERON:0001049!1.89e-19!57;UBERON:0005068!1.89e-19!57;UBERON:0006241!1.89e-19!57;UBERON:0007135!1.89e-19!57;UBERON:0005743!8.73e-17!86;UBERON:0002616!1.53e-16!59;UBERON:0000073!1.54e-16!94;UBERON:0001016!1.54e-16!94;UBERON:0001017!3.04e-16!82;UBERON:0000955!2.29e-15!69;UBERON:0006238!2.29e-15!69;UBERON:0003080!2.51e-15!42;UBERON:0003075!4.11e-15!86;UBERON:0007284!4.11e-15!86;UBERON:0002346!5.80e-15!90;UBERON:0002780!1.43e-14!41;UBERON:0001890!1.43e-14!41;UBERON:0006240!1.43e-14!41;UBERON:0003056!7.64e-11!61;UBERON:0004111!1.09e-10!241;UBERON:0001893!1.47e-10!34;UBERON:0002791!2.04e-10!33;UBERON:0002020!6.87e-10!34;UBERON:0003528!6.87e-10!34;UBERON:0002619!1.81e-09!22;UBERON:0001869!1.92e-09!32;UBERON:0000025!2.81e-09!194;UBERON:0000956!1.65e-08!25;UBERON:0000203!1.65e-08!25;UBERON:0000033!1.92e-08!123;UBERON:0000477!2.14e-08!286;UBERON:0000483!3.76e-08!309;UBERON:0001950!4.06e-08!20;UBERON:0000119!5.62e-08!312;UBERON:0000475!6.48e-08!365;UBERON:0000153!8.22e-08!129;UBERON:0007811!8.22e-08!129;UBERON:0000924!3.35e-07!173;UBERON:0006601!3.35e-07!173;UBERON:0004121!4.13e-07!169 | |||
|ontology_enrichment_uberon_v019=UBERON:0006947;1.22e-12;3!UBERON:0004054;1.22e-12;3!UBERON:0000998;2.71e-10;1!UBERON:0006868;2.71e-10;1!UBERON:0003112;6.32e-10;1!UBERON:0000941;6.32e-10;1!UBERON:0001301;6.32e-10;1!UBERON:0001785;6.32e-10;1!UBERON:0002464;6.32e-10;1!UBERON:0004904;6.32e-10;1!UBERON:0011158;6.32e-10;1!UBERON:0001021;6.32e-10;1!UBERON:0003128;6.32e-10;1!UBERON:0001703;6.32e-10;1!UBERON:0002241;6.32e-10;1!UBERON:0005904;1.05e-09;4!UBERON:0002021;5.12e-08;5!UBERON:0007023;8.70e-08;114!UBERON:0003135;9.24e-08;11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,6.55e-17,114;UBERON:0006947,8.84e-13,3;UBERON:0004054,8.84e-13,3;UBERON:0000998,3.10e-10,1;UBERON:0006868,3.10e-10,1;UBERON:0001301,3.40e-10,1;UBERON:0000941,5.79e-10,1;UBERON:0001785,5.79e-10,1;UBERON:0002464,5.79e-10,1;UBERON:0004904,5.79e-10,1;UBERON:0001021,5.79e-10,1;UBERON:0003902,5.79e-10,1;UBERON:0005425,5.79e-10,1;UBERON:0005904,8.26e-10,4;UBERON:0003112,1.07e-09,1;UBERON:0011158,1.07e-09,1;UBERON:0003128,1.07e-09,1;UBERON:0001703,1.07e-09,1;UBERON:0002241,1.07e-09,1;UBERON:0004761,1.07e-09,1;UBERON:0009617,1.07e-09,1;UBERON:0002021,5.12e-08,5;UBERON:0003135,8.04e-08,11;UBERON:0000073,3.54e-07,53;UBERON:0002616,3.54e-07,53;UBERON:0000955,5.44e-07,68;UBERON:0006238,5.44e-07,68;UBERON:0001049,9.27e-07,56;UBERON:0005068,9.27e-07,56;UBERON:0006241,9.27e-07,56;UBERON:0007135,9.27e-07,56 | |||
|phase1_expression=0,0,0,0,0.446961094427288,0,0,0.631719873426831,0.261185628199839,0,0,0.218441372130172,0,0,0,0,0,0,0.487932798790507,0,0,0,0.286235987131057,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.145398238779565,0,0,0.232429036905685,0,0,0,0,0,0,0,0,0,0,0,0.306083892370903,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127986611154418,0,0,0,0,0,0.144824403882799,0,0,0.12786256184353,0,0,0.144846518960824,0,0,0,0.221729397462564,0.087834785693126,0.130979075497713,0,0,0,0,0,0.238490624305342,0,0.371457501329565,0.198762407366705,0.860234595106124,0,0,0,0,0.208994966536811,0.258416759169329,0.35576626268671,0.66944122552934,0,0,0,1.10298924103761,0.81014194788176,0.17859945656816,0.44905874525234,0.337834441449967,0,0,0.183201743930407,0,0,0,0,0.25326102332916,0.397227542439656,0,0,0,0,0,0,0.404132016209064,0,0.151357427644931,0.576175924479999,0.234321431833797,0,0,0.597794722207204,0,0,0,0,0,0,0,0.247266929278557,0,0,0,0,0,0,0,0,0,0,0.427114777637135,0.211931901159562,0,0.103052529238439,0,0.18611685633159,0,0,0,0.0920498986422993,0.161646056818812,0,0.10075209822764,0,0.193260853163297,0,0.573609190778008,0,0,0.116193942869518,0.414644220061482,0,0,0,0,0,0,0,0,0,0.241011029883482,0,0.217879444092406,0,0,0,0,0.738155454624648,0,0,0,0,0,0.590789906681404,0,0.122988438543114,0,0.329250856225877,0,0,0.0925884451585296,0,0,0,0,0.234817388471643,0.288732895522148,0,0.951270761172991,0,0,0,0,0,0,0.16798212819886,0.141775097242386,0,0.290633938513962,0,0,0,0,0,0,0,0,1.17217447210047,0,0.205654985406647,0.300343057843917,0.857479297891735,0,0,0.07333828582095,0,0,0,0,0,0,0,0.266422179016099,0,0,0,0.325736184293735,0.355391948742546,0,0,0,0,0,0,0,0.239624855491583,0,0,0.144781306667579,0.205476322550383,0,0,0,0,0,0,0,0.773288812777695,0,0,0,0,0,0,0,0,0,0.535286966391485,0.473107245101804,0,0,2.27407504055985,0,0,0,0.173767228936166,0.195801157462741,0,0,0,0,0,0,0,0,0.153461973288062,0.280660094433074,0,0,0,0,0,0,0,0.519254429183621,0.116210378459959,0,0.40101294060657,0.184161977871793,0.114814448164607,0,0.262248829918848,0.451199612907412,0.0770153371044148,0,0,0,0,0.170093705276516,0.215915916102139,0,0,0,0.254876273045038,0,0,0,0,0.256450125116389,0,0.650756789328606,0.309123034943167,0,0.082509499920588,0.574265537996172,0,0,0,0,0.15350367472613,0.137836572484531,0,0.145016693914229,0,0,0.661139661443912,0.768760269460425,0.382838137483752,0.50578890427775,0,0,0,0.308033580176089,0,0,0,0,0,0,0,0,0,0,0,0,0.274537029736055,0.117812402345686,0,0,0.421258456238981,0,0,0,0,0.282810863907425,0,0,0,0,0,0.655894752046633,0,0.6196469961995,0,0.143411352204052,0.0982490410131212,0.35667105148125,0,0.211107635297664,0,0,0,0,0,0,0.0941438007767792,0.43050537267123,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0,0,0,0,0,0,0,0,0,0,0.561594356226918,0.228234679033192,0,0,0,0,0.201799707191048,0,0,0,0.223676107892416,0,0,0,0,0,0.99921590399346,0,0,4.39524537815682,0.242721043499027,0,0.284136146806413,0,0,0,0.994147647766298,0.422008249231538,0.111308705022906,0,0,0.19924798825107,0.552567831062295,0,0,0,0.311039587661807,0,0,0,0.887790650732402,0,0,0,9.18404171802328,0,0.260427761085233,0,1.44999915086959,0.341380344856499,0.254253650292766,0.236387681767936,0,0,0,1.77148277162768,0,1.52581736317083,0.552896299656123,0.295547618953547,0.658156191461918,0,0,0.384751292518985,0,0.23056390438806,0.0897576444097721,0.217294743844016,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0.421996129056054,0,0,0,0,0.530745387020035,0,0.296521128680622,0,0,0.539209063845416,0.802577647298789,0.234264445725339,0,0.19566461893209,0.485560759068186,0,0,0.61214552326098,0.189559738885464,0,0.103688191397247,0.664653872707185,0.330991955875499,0.313932918407225,1.19472429772959,0,0.416024019039416,0,0.0979923974143777,0.0870592065804026,1.92199335066233,0.171986032471617,0,0,0.0821154570532092,0,0.353024506766001,0,0,0.19871461170299,0.633107959558787,0,0.0801588202515337,0.640358984218058,0,0.288180834308212,0.114536596165916,0,0,0.248505071130865,0,0.407712618220842,0.209205692624666,0,0,1.20084057741958,0.273810757783986,0,0,0,0.279282401272254,0.229160424011684,0,0.199679000498991,0.858452096273142,0.223171457441873,0.134366944973453,1.44119953416961,0,0.0787831823072236,0.0824158583811665,0,0.0984274815147488,0.0846733320657845,0.795229689809303,0.681017030557878,0,0,0.83088067605837,0,0,0.364497339948148,0,0.551639951094387,0.0524545881349981,0.105600336519406,0,0,0.714695326373367,0,0,0,0,0.326587360109409,0,0,0,0,0.439656701034247,0,0.646414781807753,0,0,0,0.427149650270779,0.628817220398664,0,0,0,0,0,0,0,0,0,0,0,0.976210119215705,0.1251909307065,0.573409195690071,1.33114861844223,0.496771223531068,0,0.249960815924213,0,0,0.470531639396343,0,0.144921028610825,0,0,0,0,0,0,0.228840068396924,0,0,0.147855149989634,0,0.449803112163605,0,0,0,0.521745061811734,0,0,0.406870733204662,0.181848659202559,0.107410557042488,0,0.398095888698616,0.400027764663154,0,0,2.523697964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| |||
|short_description=p35@APP | |||
}} |
Revision as of 13:11, 21 January 2014
Short description: | p35@APP |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | No |
Description: | CAGE_peak_35_at_APP_5end |
Coexpression cluster: | C149_occipital_medial_brain_amygdala_parietal_cerebral_cerebellum |
Association with transcript: | -12bp_to_M16765_5end |
EntrezGene: | APP |
HGNC: | 620 |
UniProt: | P05067 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adult organism | 6.55e-17 | 114 |
male genital duct | 8.84e-13 | 3 |
internal male genitalia | 8.84e-13 | 3 |
seminal vesicle | 3.10e-10 | 1 |
seminal fluid secreting gland | 3.10e-10 | 1 |
epididymis | 3.40e-10 | 1 |
cranial nerve II | 5.79e-10 | 1 |
cranial nerve | 5.79e-10 | 1 |
nerve trunk | 5.79e-10 | 1 |
nerve connecting eye with brain | 5.79e-10 | 1 |
nerve | 5.79e-10 | 1 |
retinal neural layer | 5.79e-10 | 1 |
presumptive neural retina | 5.79e-10 | 1 |
duct of male reproductive system | 8.26e-10 | 4 |
olfactory region | 1.07e-09 | 1 |
primary subdivision of skull | 1.07e-09 | 1 |
cranium | 1.07e-09 | 1 |
neurocranium | 1.07e-09 | 1 |
chondrocranium | 1.07e-09 | 1 |
cartilaginous neurocranium | 1.07e-09 | 1 |
head paraxial mesoderm | 1.07e-09 | 1 |
occipital lobe | 5.12e-08 | 5 |
male reproductive organ | 8.04e-08 | 11 |
regional part of nervous system | 3.54e-07 | 53 |
regional part of brain | 3.54e-07 | 53 |
brain | 5.44e-07 | 68 |
future brain | 5.44e-07 | 68 |
neural tube | 9.27e-07 | 56 |
neural rod | 9.27e-07 | 56 |
future spinal cord | 9.27e-07 | 56 |
neural keel | 9.27e-07 | 56 |
Ontology term | p-value | n |
---|---|---|
liver cancer | 5.30e-10 | 1 |