FFCP PHASE1:Hg19::chr5:74062931..74062980,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=84340 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29682 | |||
|TSSclassifier=strong | |||
|UniProt=D6RF75 | |||
|association_with_transcript=0bp_to_ENST00000345239,ENST00000427854,ENST00000506778_5end | |||
|description=CAGE_peak_1_at_GFM2_5end | |||
|id=chr5:74062931..74062980,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:162!5.68e-13!235;DOID:14566!6.13e-13!239;DOID:0050686!1.50e-09!137;DOID:2531!1.84e-08!51;DOID:0060083!1.84e-08!51;DOID:1240!2.44e-08!39;DOID:8692!1.38e-07!31 | |||
|ontology_enrichment_disease_v019=DOID:8692;1.66e-07;31!DOID:1240;4.60e-07;39 | |||
|ontology_enrichment_disease_v019_2=DOID:162,5.68e-13,235;DOID:14566,6.13e-13,239;DOID:0050686,1.50e-09,137;DOID:2531,1.84e-08,51;DOID:0060083,1.84e-08,51;DOID:1240,2.44e-08,39;DOID:8692,1.38e-07,31 | |||
|ontology_enrichment_uberon=UBERON:0005743!1.04e-14!86;UBERON:0001017!1.50e-14!82;UBERON:0000073!1.76e-14!94;UBERON:0001016!1.76e-14!94;UBERON:0000955!1.68e-13!69;UBERON:0006238!1.68e-13!69;UBERON:0002780!1.37e-12!41;UBERON:0001890!1.37e-12!41;UBERON:0006240!1.37e-12!41;UBERON:0000153!4.48e-12!129;UBERON:0007811!4.48e-12!129;UBERON:0003080!5.34e-12!42;UBERON:0000033!8.26e-12!123;UBERON:0001049!1.33e-10!57;UBERON:0005068!1.33e-10!57;UBERON:0006241!1.33e-10!57;UBERON:0007135!1.33e-10!57;UBERON:0001869!2.21e-10!32;UBERON:0000475!4.08e-10!365;UBERON:0001893!4.69e-10!34;UBERON:0002616!5.84e-10!59;UBERON:0004121!1.30e-09!169;UBERON:0002791!1.48e-09!33;UBERON:0000924!3.57e-09!173;UBERON:0006601!3.57e-09!173;UBERON:0002020!6.59e-09!34;UBERON:0003528!6.59e-09!34;UBERON:0003075!1.27e-08!86;UBERON:0007284!1.27e-08!86;UBERON:0002619!2.16e-08!22;UBERON:0003056!2.22e-08!61;UBERON:0000956!3.99e-08!25;UBERON:0000203!3.99e-08!25;UBERON:0001950!4.84e-08!20;UBERON:0002346!5.55e-08!90;UBERON:0007023!9.07e-08!115;UBERON:0000481!5.01e-07!347 | |||
|ontology_enrichment_uberon_v019=UBERON:0001869;2.53e-09;32!UBERON:0001893;7.30e-09;34!UBERON:0002780;7.83e-09;41!UBERON:0001890;7.83e-09;41!UBERON:0002791;1.41e-08;32!UBERON:0002619;2.57e-08;22!UBERON:0003528;3.28e-08;34!UBERON:0002020;3.28e-08;34!UBERON:0000956;5.16e-08;25!UBERON:0000203;5.16e-08;25!UBERON:0001950;5.43e-08;20!UBERON:0000955;2.94e-07;68!UBERON:0001017;7.02e-07;75 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,5.61e-15,81;UBERON:0001016,1.10e-14,89;UBERON:0000955,5.89e-14,68;UBERON:0006238,5.89e-14,68;UBERON:0011216,1.05e-12,223;UBERON:0002780,1.37e-12,41;UBERON:0001890,1.37e-12,41;UBERON:0003080,1.37e-12,41;UBERON:0006240,1.37e-12,41;UBERON:0001049,4.88e-11,56;UBERON:0005068,4.88e-11,56;UBERON:0006241,4.88e-11,56;UBERON:0007135,4.88e-11,56;UBERON:0000073,1.32e-10,53;UBERON:0002616,1.32e-10,53;UBERON:0001869,2.21e-10,32;UBERON:0001893,4.69e-10,34;UBERON:0002791,1.87e-09,32;UBERON:0003528,6.59e-09,34;UBERON:0002020,6.59e-09,34;UBERON:0004121,8.04e-09,171;UBERON:0000924,8.04e-09,171;UBERON:0006601,8.04e-09,171;UBERON:0002619,2.16e-08,22;UBERON:0003056,2.39e-08,61;UBERON:0000956,3.99e-08,25;UBERON:0000203,3.99e-08,25;UBERON:0001950,4.84e-08,20;UBERON:0007023,9.40e-08,114;UBERON:0003075,9.76e-08,82;UBERON:0007284,9.76e-08,82;UBERON:0010314,1.30e-07,132;UBERON:0002346,3.92e-07,86 | |||
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| |||
|short_description=p1@GFM2 | |||
}} |
Revision as of 05:57, 22 January 2014
Short description: | p1@GFM2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_GFM2_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000345239, ENST00000427854, ENST00000506778_5end |
EntrezGene: | GFM2 |
HGNC: | 29682 |
UniProt: | D6RF75 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
central nervous system | 5.61e-15 | 81 |
nervous system | 1.10e-14 | 89 |
brain | 5.89e-14 | 68 |
future brain | 5.89e-14 | 68 |
organ system subdivision | 1.05e-12 | 223 |
regional part of forebrain | 1.37e-12 | 41 |
forebrain | 1.37e-12 | 41 |
anterior neural tube | 1.37e-12 | 41 |
future forebrain | 1.37e-12 | 41 |
neural tube | 4.88e-11 | 56 |
neural rod | 4.88e-11 | 56 |
future spinal cord | 4.88e-11 | 56 |
neural keel | 4.88e-11 | 56 |
regional part of nervous system | 1.32e-10 | 53 |
regional part of brain | 1.32e-10 | 53 |
cerebral hemisphere | 2.21e-10 | 32 |
telencephalon | 4.69e-10 | 34 |
regional part of telencephalon | 1.87e-09 | 32 |
brain grey matter | 6.59e-09 | 34 |
gray matter | 6.59e-09 | 34 |
ectoderm-derived structure | 8.04e-09 | 171 |
ectoderm | 8.04e-09 | 171 |
presumptive ectoderm | 8.04e-09 | 171 |
regional part of cerebral cortex | 2.16e-08 | 22 |
pre-chordal neural plate | 2.39e-08 | 61 |
cerebral cortex | 3.99e-08 | 25 |
pallium | 3.99e-08 | 25 |
neocortex | 4.84e-08 | 20 |
adult organism | 9.40e-08 | 114 |
neural plate | 9.76e-08 | 82 |
presumptive neural plate | 9.76e-08 | 82 |
structure with developmental contribution from neural crest | 1.30e-07 | 132 |
neurectoderm | 3.92e-07 | 86 |
Ontology term | p-value | n |
---|---|---|
cancer | 5.68e-13 | 235 |
disease of cellular proliferation | 6.13e-13 | 239 |
organ system cancer | 1.50e-09 | 137 |
hematologic cancer | 1.84e-08 | 51 |
immune system cancer | 1.84e-08 | 51 |
leukemia | 2.44e-08 | 39 |
myeloid leukemia | 1.38e-07 | 31 |