FFCP PHASE1:Hg19::chr5:139944134..139944191,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=10307 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=20708 | |||
|TSSclassifier=strong | |||
|UniProt=O95704,Q59EH2,Q96DX9,Q54A46 | |||
|association_with_transcript=0bp_to_ENST00000510241,NM_006051,NM_133172,NM_133173,NM_133174,uc003lgd.1,uc003lge.1,uc003lgf.1,uc010jfp.1,uc010jfr.1,uc011czi.1_5end | |||
|description=CAGE_peak_2_at_APBB3_5end | |||
|id=chr5:139944134..139944191,- | |||
|ontology_enrichment_celltype=CL:0000838!4.52e-19!52;CL:0000542!1.10e-18!53;CL:0000051!1.10e-18!53;CL:0000084!1.37e-12!25;CL:0000827!1.37e-12!25;CL:0000791!1.07e-10!18;CL:0000789!1.07e-10!18;CL:0002420!1.07e-10!18;CL:0002419!1.07e-10!18;CL:0000790!1.07e-10!18;CL:0000625!2.02e-07!11;CL:0000945!2.73e-07!24;CL:0000826!2.73e-07!24 | |||
|ontology_enrichment_celltype_v019=CL:0000084;9.73e-13;25!CL:0000542;9.30e-12;53!CL:0000791;6.78e-11;18!CL:0000789;6.78e-11;18!CL:0002419;6.78e-11;18!CL:0000945;1.22e-07;24!CL:0000625;1.66e-07;11 | |||
|ontology_enrichment_celltype_v019_2=CL:0000838,2.15e-19,52;CL:0000542,5.30e-19,53;CL:0000051,5.30e-19,53;CL:0000084,1.08e-12,25;CL:0000827,1.08e-12,25;CL:0000791,8.78e-11,18;CL:0000789,8.78e-11,18;CL:0002420,8.78e-11,18;CL:0002419,8.78e-11,18;CL:0000790,8.78e-11,18;CL:0000625,1.77e-07,11;CL:0000945,1.78e-07,24;CL:0000826,1.78e-07,24 | |||
|ontology_enrichment_development_v019=CL:0000051;9.30e-12;53!CL:0000790;6.78e-11;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!8.61e-15!94;UBERON:0001016!8.61e-15!94;UBERON:0001049!3.97e-14!57;UBERON:0005068!3.97e-14!57;UBERON:0006241!3.97e-14!57;UBERON:0007135!3.97e-14!57;UBERON:0001017!2.73e-13!82;UBERON:0005743!9.05e-13!86;UBERON:0000955!2.85e-12!69;UBERON:0006238!2.85e-12!69;UBERON:0002616!4.76e-12!59;UBERON:0003080!1.85e-10!42;UBERON:0002780!2.15e-10!41;UBERON:0001890!2.15e-10!41;UBERON:0006240!2.15e-10!41;UBERON:0007023!4.28e-10!115;UBERON:0002346!7.24e-09!90;UBERON:0002020!2.56e-08!34;UBERON:0003528!2.56e-08!34;UBERON:0003075!2.70e-08!86;UBERON:0007284!2.70e-08!86;UBERON:0001893!3.59e-08!34;UBERON:0002791!5.75e-08!33;UBERON:0001869!1.85e-07!32;UBERON:0003056!9.24e-07!61 | |||
|ontology_enrichment_uberon_v019=UBERON:0000073;3.98e-08;53!UBERON:0002616;3.98e-08;53!UBERON:0002780;6.98e-08;41!UBERON:0001890;6.98e-08;41!UBERON:0003528;2.53e-07;34!UBERON:0002020;2.53e-07;34!UBERON:0001893;4.29e-07;34!UBERON:0002791;5.32e-07;32!UBERON:0001869;7.31e-07;32!UBERON:0001016;7.99e-07;83 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,2.44e-15,89;UBERON:0001049,4.33e-14,56;UBERON:0005068,4.33e-14,56;UBERON:0006241,4.33e-14,56;UBERON:0007135,4.33e-14,56;UBERON:0001017,2.83e-13,81;UBERON:0000073,3.18e-13,53;UBERON:0002616,3.18e-13,53;UBERON:0000955,3.12e-12,68;UBERON:0006238,3.12e-12,68;UBERON:0002780,2.15e-10,41;UBERON:0001890,2.15e-10,41;UBERON:0003080,2.15e-10,41;UBERON:0006240,2.15e-10,41;UBERON:0007023,5.47e-10,114;UBERON:0002346,3.20e-09,86;UBERON:0003075,1.23e-08,82;UBERON:0007284,1.23e-08,82;UBERON:0003528,2.66e-08,34;UBERON:0002020,2.66e-08,34;UBERON:0001893,3.74e-08,34;UBERON:0002791,1.35e-07,32;UBERON:0001869,1.95e-07,32;UBERON:0003056,6.10e-07,61 | |||
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| |||
|short_description=p2@APBB3 | |||
}} |
Revision as of 07:49, 22 January 2014
Short description: | p2@APBB3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_APBB3_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000510241, NM_006051, NM_133172, NM_133173, NM_133174, uc003lgd.1, uc003lge.1, uc003lgf.1, uc010jfp.1, uc010jfr.1, uc011czi.1_5end |
EntrezGene: | APBB3 |
HGNC: | 20708 |
UniProt: | O95704Q59EH2Q96DX9Q54A46 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphoid lineage restricted progenitor cell | 2.15e-19 | 52 |
lymphocyte | 5.30e-19 | 53 |
common lymphoid progenitor | 5.30e-19 | 53 |
T cell | 1.08e-12 | 25 |
pro-T cell | 1.08e-12 | 25 |
mature alpha-beta T cell | 8.78e-11 | 18 |
alpha-beta T cell | 8.78e-11 | 18 |
immature T cell | 8.78e-11 | 18 |
mature T cell | 8.78e-11 | 18 |
immature alpha-beta T cell | 8.78e-11 | 18 |
CD8-positive, alpha-beta T cell | 1.77e-07 | 11 |
lymphocyte of B lineage | 1.78e-07 | 24 |
pro-B cell | 1.78e-07 | 24 |
Ontology term | p-value | n |
---|---|---|
nervous system | 2.44e-15 | 89 |
neural tube | 4.33e-14 | 56 |
neural rod | 4.33e-14 | 56 |
future spinal cord | 4.33e-14 | 56 |
neural keel | 4.33e-14 | 56 |
central nervous system | 2.83e-13 | 81 |
regional part of nervous system | 3.18e-13 | 53 |
regional part of brain | 3.18e-13 | 53 |
brain | 3.12e-12 | 68 |
future brain | 3.12e-12 | 68 |
regional part of forebrain | 2.15e-10 | 41 |
forebrain | 2.15e-10 | 41 |
anterior neural tube | 2.15e-10 | 41 |
future forebrain | 2.15e-10 | 41 |
adult organism | 5.47e-10 | 114 |
neurectoderm | 3.20e-09 | 86 |
neural plate | 1.23e-08 | 82 |
presumptive neural plate | 1.23e-08 | 82 |
brain grey matter | 2.66e-08 | 34 |
gray matter | 2.66e-08 | 34 |
telencephalon | 3.74e-08 | 34 |
regional part of telencephalon | 1.35e-07 | 32 |
cerebral hemisphere | 1.95e-07 | 32 |
pre-chordal neural plate | 6.10e-07 | 61 |