FFCP PHASE1:Hg19::chr12:52597291..52597302,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr12:52597291..52597302,+ | |||
|coexpression_cluster_id=C0 | |||
|description=CAGE_peak_at_chr12:52597291..52597302,+ | |description=CAGE_peak_at_chr12:52597291..52597302,+ | ||
|id=chr12:52597291..52597302,+ | |id=chr12:52597291..52597302,+ | ||
|ontology_enrichment_celltype=CL:0002057!1.44e-99!42;CL:0000860!2.13e-92!45;CL:0000766!7.70e-65!76;CL:0002009!2.44e-64!65;CL:0002194!1.38e-62!63;CL:0000576!1.38e-62!63;CL:0000040!1.38e-62!63;CL:0000559!1.38e-62!63;CL:0000557!6.77e-62!71;CL:0000839!3.66e-59!70;CL:0000763!6.07e-44!112;CL:0000049!6.07e-44!112;CL:0000738!6.04e-42!140;CL:0002087!3.33e-38!119;CL:0002031!2.27e-36!124;CL:0000037!1.81e-32!172;CL:0000566!1.81e-32!172;CL:0002032!1.42e-30!165;CL:0000837!1.42e-30!165;CL:0000988!3.46e-30!182;CL:0000767!7.32e-13!3;CL:0000134!8.12e-11!358;CL:0002320!1.97e-10!365;CL:0000219!4.45e-09!390;CL:0000034!3.24e-08!444;CL:0000723!7.23e-08!436;CL:0000048!1.83e-07!430 | |ontology_enrichment_celltype=CL:0002057!1.44e-99!42;CL:0000860!2.13e-92!45;CL:0000766!7.70e-65!76;CL:0002009!2.44e-64!65;CL:0002194!1.38e-62!63;CL:0000576!1.38e-62!63;CL:0000040!1.38e-62!63;CL:0000559!1.38e-62!63;CL:0000557!6.77e-62!71;CL:0000839!3.66e-59!70;CL:0000763!6.07e-44!112;CL:0000049!6.07e-44!112;CL:0000738!6.04e-42!140;CL:0002087!3.33e-38!119;CL:0002031!2.27e-36!124;CL:0000037!1.81e-32!172;CL:0000566!1.81e-32!172;CL:0002032!1.42e-30!165;CL:0000837!1.42e-30!165;CL:0000988!3.46e-30!182;CL:0000767!7.32e-13!3;CL:0000134!8.12e-11!358;CL:0002320!1.97e-10!365;CL:0000219!4.45e-09!390;CL:0000034!3.24e-08!444;CL:0000723!7.23e-08!436;CL:0000048!1.83e-07!430 | ||
|ontology_enrichment_celltype_v019=CL:0000860;1.31e-110;33!CL:0002057;1.31e-110;33!CL:0000473;3.33e-75;39!CL:0000234;3.33e-75;39!CL:0000576;6.52e-65;48!CL:0000766;1.79e-38;69!CL:0000763;1.47e-18;100!CL:0000767;1.68e-18;3!CL:0002087;7.74e-16;104!CL:0000738;1.01e-10;136!CL:0002393;2.57e-09;6!CL:0002397;2.57e-09;6!CL:0000094;2.96e-07;8 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,3.51e-117,42;CL:0002057,3.51e-117,42;CL:0000473,6.71e-102,48;CL:0000234,6.71e-102,48;CL:0002194,1.70e-80,59;CL:0000576,1.70e-80,59;CL:0000040,1.70e-80,59;CL:0000559,1.70e-80,59;CL:0000766,3.25e-80,72;CL:0002009,9.82e-78,61;CL:0000839,1.51e-71,66;CL:0000557,2.02e-70,67;CL:0000763,5.74e-52,108;CL:0000049,5.74e-52,108;CL:0000738,3.04e-40,136;CL:0002087,4.12e-39,115;CL:0002031,2.82e-37,120;CL:0002032,3.43e-33,161;CL:0000837,3.43e-33,161;CL:0000037,1.37e-31,168;CL:0000988,1.03e-29,177;CL:0000767,1.53e-18,3;CL:0000134,4.47e-12,354;CL:0002320,9.92e-12,361;CL:0000219,1.64e-10,386;CL:0000048,5.14e-09,427;CL:0000723,8.27e-09,433;CL:0000034,1.53e-08,441;CL:0000094,2.87e-07,8 | |||
|ontology_enrichment_development_v019=CL:0002057;5.70e-85;42!CL:0000049;7.64e-13;108!UBERON:0005425;4.21e-07;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!4.32e-54!80;UBERON:0001474!8.75e-50!86;UBERON:0002390!1.25e-48!102;UBERON:0003061!1.25e-48!102;UBERON:0002193!1.50e-43!112;UBERON:0004765!3.11e-41!101;UBERON:0001434!3.11e-41!101;UBERON:0002405!1.75e-37!115;UBERON:0002204!9.20e-22!167;UBERON:0003081!5.32e-21!216;UBERON:0002384!6.58e-10!375 | |||
|ontology_enrichment_uberon_v019=UBERON:0000941;4.21e-07;1!UBERON:0001785;4.21e-07;1!UBERON:0002464;4.21e-07;1!UBERON:0004904;4.21e-07;1!UBERON:0001021;4.21e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.39e-61,76;UBERON:0001474,9.37e-57,82;UBERON:0004765,2.64e-51,90;UBERON:0002405,1.68e-49,93;UBERON:0002390,9.81e-47,98;UBERON:0003061,9.81e-47,98;UBERON:0001434,1.05e-45,100;UBERON:0002193,5.80e-42,108;UBERON:0002204,2.39e-25,167;UBERON:0003081,6.48e-20,203;UBERON:0002384,2.94e-11,371;UBERON:0000926,6.81e-11,315;UBERON:0004120,6.81e-11,315;UBERON:0006603,6.81e-11,315;UBERON:0000941,4.09e-07,1;UBERON:0001785,4.09e-07,1;UBERON:0002464,4.09e-07,1;UBERON:0004904,4.09e-07,1;UBERON:0001021,4.09e-07,1;UBERON:0003902,4.09e-07,1;UBERON:0005425,4.09e-07,1 | |||
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| ||
|short_description=p@chr12:52597291..52597302,+ | |short_description=p@chr12:52597291..52597302,+ | ||
}} | }} |
Latest revision as of 09:29, 24 July 2015
Short description: | p@chr12:52597291..52597302, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr12:52597291..52597302, + |
Coexpression cluster: | C0_CD14_Eosinophils_Neutrophils_Basophils_CD34_immature_Peripheral |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 3.51e-117 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.51e-117 | 42 |
defensive cell | 6.71e-102 | 48 |
phagocyte | 6.71e-102 | 48 |
monopoietic cell | 1.70e-80 | 59 |
monocyte | 1.70e-80 | 59 |
monoblast | 1.70e-80 | 59 |
promonocyte | 1.70e-80 | 59 |
myeloid leukocyte | 3.25e-80 | 72 |
macrophage dendritic cell progenitor | 9.82e-78 | 61 |
myeloid lineage restricted progenitor cell | 1.51e-71 | 66 |
granulocyte monocyte progenitor cell | 2.02e-70 | 67 |
myeloid cell | 5.74e-52 | 108 |
common myeloid progenitor | 5.74e-52 | 108 |
leukocyte | 3.04e-40 | 136 |
nongranular leukocyte | 4.12e-39 | 115 |
hematopoietic lineage restricted progenitor cell | 2.82e-37 | 120 |
hematopoietic oligopotent progenitor cell | 3.43e-33 | 161 |
hematopoietic multipotent progenitor cell | 3.43e-33 | 161 |
hematopoietic stem cell | 1.37e-31 | 168 |
hematopoietic cell | 1.03e-29 | 177 |
basophil | 1.53e-18 | 3 |
mesenchymal cell | 4.47e-12 | 354 |
connective tissue cell | 9.92e-12 | 361 |
motile cell | 1.64e-10 | 386 |
multi fate stem cell | 5.14e-09 | 427 |
somatic stem cell | 8.27e-09 | 433 |
stem cell | 1.53e-08 | 441 |
granulocyte | 2.87e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 1.39e-61 | 76 |
bone element | 9.37e-57 | 82 |
skeletal element | 2.64e-51 | 90 |
immune system | 1.68e-49 | 93 |
hematopoietic system | 9.81e-47 | 98 |
blood island | 9.81e-47 | 98 |
skeletal system | 1.05e-45 | 100 |
hemolymphoid system | 5.80e-42 | 108 |
musculoskeletal system | 2.39e-25 | 167 |
lateral plate mesoderm | 6.48e-20 | 203 |
connective tissue | 2.94e-11 | 371 |
mesoderm | 6.81e-11 | 315 |
mesoderm-derived structure | 6.81e-11 | 315 |
presumptive mesoderm | 6.81e-11 | 315 |
cranial nerve II | 4.09e-07 | 1 |
cranial nerve | 4.09e-07 | 1 |
nerve trunk | 4.09e-07 | 1 |
nerve connecting eye with brain | 4.09e-07 | 1 |
nerve | 4.09e-07 | 1 |
retinal neural layer | 4.09e-07 | 1 |
presumptive neural retina | 4.09e-07 | 1 |