FFCP PHASE1:Hg19::chr13:29042183..29042220,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr13:29042183..29042220,- | |||
|coexpression_cluster_id=C0 | |||
|description=CAGE_peak_at_chr13:29042183..29042220,- | |description=CAGE_peak_at_chr13:29042183..29042220,- | ||
|id=chr13:29042183..29042220,- | |id=chr13:29042183..29042220,- | ||
|ontology_enrichment_celltype=CL:0002057!4.46e-107!42;CL:0000860!2.49e-99!45;CL:0002194!6.50e-75!63;CL:0000576!6.50e-75!63;CL:0000040!6.50e-75!63;CL:0000559!6.50e-75!63;CL:0002009!2.34e-72!65;CL:0000766!2.03e-71!76;CL:0000839!1.36e-66!70;CL:0000557!1.54e-65!71;CL:0000763!1.67e-45!112;CL:0000049!1.67e-45!112;CL:0002087!1.68e-44!119;CL:0000738!9.99e-43!140;CL:0002031!7.08e-38!124;CL:0000037!6.88e-33!172;CL:0000566!6.88e-33!172;CL:0000988!3.64e-32!182;CL:0002032!3.84e-31!165;CL:0000837!3.84e-31!165;CL:0002393!1.03e-13!9;CL:0002397!1.03e-13!9;CL:0000134!3.31e-11!358;CL:0002320!8.58e-11!365;CL:0000219!2.45e-09!390;CL:0000048!1.32e-07!430;CL:0000723!2.33e-07!436;CL:0000034!4.81e-07!444 | |ontology_enrichment_celltype=CL:0002057!4.46e-107!42;CL:0000860!2.49e-99!45;CL:0002194!6.50e-75!63;CL:0000576!6.50e-75!63;CL:0000040!6.50e-75!63;CL:0000559!6.50e-75!63;CL:0002009!2.34e-72!65;CL:0000766!2.03e-71!76;CL:0000839!1.36e-66!70;CL:0000557!1.54e-65!71;CL:0000763!1.67e-45!112;CL:0000049!1.67e-45!112;CL:0002087!1.68e-44!119;CL:0000738!9.99e-43!140;CL:0002031!7.08e-38!124;CL:0000037!6.88e-33!172;CL:0000566!6.88e-33!172;CL:0000988!3.64e-32!182;CL:0002032!3.84e-31!165;CL:0000837!3.84e-31!165;CL:0002393!1.03e-13!9;CL:0002397!1.03e-13!9;CL:0000134!3.31e-11!358;CL:0002320!8.58e-11!365;CL:0000219!2.45e-09!390;CL:0000048!1.32e-07!430;CL:0000723!2.33e-07!436;CL:0000034!4.81e-07!444 | ||
|ontology_enrichment_celltype_v019=CL:0000860;3.23e-127;33!CL:0002057;3.23e-127;33!CL:0000473;2.07e-84;39!CL:0000234;2.07e-84;39!CL:0000576;5.04e-70;48!CL:0000766;2.25e-41;69!CL:0002087;5.84e-19;104!CL:0000763;1.89e-17;100!CL:0000738;2.72e-11;136!CL:0002393;2.84e-10;6!CL:0002397;2.84e-10;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,7.58e-134,42;CL:0002057,7.58e-134,42;CL:0000473,1.57e-116,48;CL:0000234,1.57e-116,48;CL:0002194,2.80e-92,59;CL:0000576,2.80e-92,59;CL:0000040,2.80e-92,59;CL:0000559,2.80e-92,59;CL:0002009,3.78e-89,61;CL:0000839,3.86e-82,66;CL:0000557,7.33e-81,67;CL:0000766,5.39e-75,72;CL:0000763,1.28e-48,108;CL:0000049,1.28e-48,108;CL:0002087,2.17e-45,115;CL:0002031,2.61e-43,120;CL:0000738,1.13e-37,136;CL:0002032,4.36e-31,161;CL:0000837,4.36e-31,161;CL:0000037,1.37e-29,168;CL:0000988,7.71e-28,177;CL:0000134,2.32e-11,354;CL:0002320,4.88e-11,361;CL:0000219,6.73e-10,386;CL:0000048,1.68e-08,427;CL:0000723,2.63e-08,433;CL:0000034,4.67e-08,441;CL:0002393,5.78e-07,9;CL:0002397,5.78e-07,9 | |||
|ontology_enrichment_development_v019=CL:0002057;4.11e-100;42!CL:0000049;2.79e-13;108!UBERON:0005425;1.69e-07;1 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!3.33e-57!80;UBERON:0001474!1.65e-55!86;UBERON:0002390!1.68e-53!102;UBERON:0003061!1.68e-53!102;UBERON:0002193!7.09e-48!112;UBERON:0004765!6.24e-46!101;UBERON:0001434!6.24e-46!101;UBERON:0002405!2.93e-39!115;UBERON:0002204!3.98e-24!167;UBERON:0003081!2.43e-21!216;UBERON:0002384!3.15e-10!375;UBERON:0000926!8.24e-07!448;UBERON:0004120!8.24e-07!448;UBERON:0006603!8.24e-07!448 | |ontology_enrichment_uberon=UBERON:0002371!3.33e-57!80;UBERON:0001474!1.65e-55!86;UBERON:0002390!1.68e-53!102;UBERON:0003061!1.68e-53!102;UBERON:0002193!7.09e-48!112;UBERON:0004765!6.24e-46!101;UBERON:0001434!6.24e-46!101;UBERON:0002405!2.93e-39!115;UBERON:0002204!3.98e-24!167;UBERON:0003081!2.43e-21!216;UBERON:0002384!3.15e-10!375;UBERON:0000926!8.24e-07!448;UBERON:0004120!8.24e-07!448;UBERON:0006603!8.24e-07!448 | ||
|ontology_enrichment_uberon_v019=UBERON:0000941;1.69e-07;1!UBERON:0001785;1.69e-07;1!UBERON:0002464;1.69e-07;1!UBERON:0004904;1.69e-07;1!UBERON:0001021;1.69e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,7.54e-71,76;UBERON:0001474,2.23e-65,82;UBERON:0004765,3.33e-59,90;UBERON:0002405,3.69e-57,93;UBERON:0002390,5.01e-54,98;UBERON:0003061,5.01e-54,98;UBERON:0001434,7.35e-53,100;UBERON:0002193,1.28e-48,108;UBERON:0002204,8.50e-30,167;UBERON:0003081,1.21e-23,203;UBERON:0000926,2.02e-13,315;UBERON:0004120,2.02e-13,315;UBERON:0006603,2.02e-13,315;UBERON:0002384,1.35e-10,371;UBERON:0000941,1.64e-07,1;UBERON:0001785,1.64e-07,1;UBERON:0002464,1.64e-07,1;UBERON:0004904,1.64e-07,1;UBERON:0001021,1.64e-07,1;UBERON:0003902,1.64e-07,1;UBERON:0005425,1.64e-07,1 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.767658796194425,0.77408061658038,0,0,0,0,0,0,6.09394949385065,2.00544447470142,2.17010870715852,0,0,0,1.01778767145695,1.13362783106643,0.727752183563449,1.39457422143411,4.52284676824008,1.85823822537062,2.58923153089935,2.56160706529101,7.33094912654614,12.0660988257816,9.03678557017357,10.8341189275473,2.07066573496865,3.0019676506363,2.9214052977861,4.89734227793444,6.09765151444578,3.83602275479425,0,1.79517291859469,0.852449501065388,3.48251086354301,5.10646702222026,3.73693349397345,5.02497330513487,4.17186334736161,7.38442071997397,3.63239701580021,14.362827803515,6.64571013625857,0.211255286311942,0.425208599930087,0.419317291016752,0.561643155732475,0,0,0,0,0,0,0,0,0.426730222566507,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132957960518865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0892997282840798,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.234004265139238,0,0,0,0,0,0.290633938513962,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.394061520403854,0,0,0,0,0,0,0,0.749007023947182,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.647142602455851,0.533637789017222,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.082509499920588,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0.507447609232169,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140669416410513,0,0,0,0,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.296521128680622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146552233678082,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.42769420259154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.297046400327086,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.767658796194425,0.77408061658038,0,0,0,0,0,0,6.09394949385065,2.00544447470142,2.17010870715852,0,0,0,1.01778767145695,1.13362783106643,0.727752183563449,1.39457422143411,4.52284676824008,1.85823822537062,2.58923153089935,2.56160706529101,7.33094912654614,12.0660988257816,9.03678557017357,10.8341189275473,2.07066573496865,3.0019676506363,2.9214052977861,4.89734227793444,6.09765151444578,3.83602275479425,0,1.79517291859469,0.852449501065388,3.48251086354301,5.10646702222026,3.73693349397345,5.02497330513487,4.17186334736161,7.38442071997397,3.63239701580021,14.362827803515,6.64571013625857,0.211255286311942,0.425208599930087,0.419317291016752,0.561643155732475,0,0,0,0,0,0,0,0,0.426730222566507,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132957960518865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0892997282840798,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.234004265139238,0,0,0,0,0,0.290633938513962,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.394061520403854,0,0,0,0,0,0,0,0.749007023947182,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.647142602455851,0.533637789017222,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.082509499920588,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0.507447609232169,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140669416410513,0,0,0,0,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.296521128680622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146552233678082,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.42769420259154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.297046400327086,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr13:29042183..29042220,- | |short_description=p@chr13:29042183..29042220,- | ||
}} | }} |
Latest revision as of 15:25, 24 July 2015
Short description: | p@chr13:29042183..29042220, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr13:29042183..29042220, - |
Coexpression cluster: | C0_CD14_Eosinophils_Neutrophils_Basophils_CD34_immature_Peripheral |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 7.58e-134 | 42 |
CD14-positive, CD16-negative classical monocyte | 7.58e-134 | 42 |
defensive cell | 1.57e-116 | 48 |
phagocyte | 1.57e-116 | 48 |
monopoietic cell | 2.80e-92 | 59 |
monocyte | 2.80e-92 | 59 |
monoblast | 2.80e-92 | 59 |
promonocyte | 2.80e-92 | 59 |
macrophage dendritic cell progenitor | 3.78e-89 | 61 |
myeloid lineage restricted progenitor cell | 3.86e-82 | 66 |
granulocyte monocyte progenitor cell | 7.33e-81 | 67 |
myeloid leukocyte | 5.39e-75 | 72 |
myeloid cell | 1.28e-48 | 108 |
common myeloid progenitor | 1.28e-48 | 108 |
nongranular leukocyte | 2.17e-45 | 115 |
hematopoietic lineage restricted progenitor cell | 2.61e-43 | 120 |
leukocyte | 1.13e-37 | 136 |
hematopoietic oligopotent progenitor cell | 4.36e-31 | 161 |
hematopoietic multipotent progenitor cell | 4.36e-31 | 161 |
hematopoietic stem cell | 1.37e-29 | 168 |
hematopoietic cell | 7.71e-28 | 177 |
mesenchymal cell | 2.32e-11 | 354 |
connective tissue cell | 4.88e-11 | 361 |
motile cell | 6.73e-10 | 386 |
multi fate stem cell | 1.68e-08 | 427 |
somatic stem cell | 2.63e-08 | 433 |
stem cell | 4.67e-08 | 441 |
intermediate monocyte | 5.78e-07 | 9 |
CD14-positive, CD16-positive monocyte | 5.78e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 7.54e-71 | 76 |
bone element | 2.23e-65 | 82 |
skeletal element | 3.33e-59 | 90 |
immune system | 3.69e-57 | 93 |
hematopoietic system | 5.01e-54 | 98 |
blood island | 5.01e-54 | 98 |
skeletal system | 7.35e-53 | 100 |
hemolymphoid system | 1.28e-48 | 108 |
musculoskeletal system | 8.50e-30 | 167 |
lateral plate mesoderm | 1.21e-23 | 203 |
mesoderm | 2.02e-13 | 315 |
mesoderm-derived structure | 2.02e-13 | 315 |
presumptive mesoderm | 2.02e-13 | 315 |
connective tissue | 1.35e-10 | 371 |
cranial nerve II | 1.64e-07 | 1 |
cranial nerve | 1.64e-07 | 1 |
nerve trunk | 1.64e-07 | 1 |
nerve connecting eye with brain | 1.64e-07 | 1 |
nerve | 1.64e-07 | 1 |
retinal neural layer | 1.64e-07 | 1 |
presumptive neural retina | 1.64e-07 | 1 |