FFCP PHASE1:Hg19::chr1:201452734..201452760,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(9 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr1:201452734..201452760,- | |||
|description=CAGE_peak_at_chr1:201452734..201452760,- | |description=CAGE_peak_at_chr1:201452734..201452760,- | ||
|id=chr1:201452734..201452760,- | |id=chr1:201452734..201452760,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0002593;1.64e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002593,2.25e-07,2 | |||
|ontology_enrichment_development_v019=UBERON:0005754;3.73e-14;1!UBERON:0004874;3.73e-14;1!UBERON:0009143;9.72e-14;1!UBERON:0010226;9.72e-14;1!UBERON:0005425;9.72e-14;1!UBERON:0007297;1.02e-07;2 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3571;9.72e-14;1!DOID:3350;1.64e-07;2 | |||
|ontology_enrichment_disease_v019_2=DOID:3571,1.42e-13,1;DOID:3350,1.99e-07,2 | |||
|ontology_enrichment_uberon=UBERON:0007023!1.25e-15!115;UBERON:0002346!3.71e-07!90;UBERON:0003075!8.31e-07!86;UBERON:0007284!8.31e-07!86 | |||
|ontology_enrichment_uberon_v019=UBERON:0000989;3.73e-14;1!UBERON:0000998;3.73e-14;1!UBERON:0008811;3.73e-14;1!UBERON:0006868;3.73e-14;1!UBERON:0002084;9.72e-14;1!UBERON:0002038;9.72e-14;1!UBERON:0000941;9.72e-14;1!UBERON:0001785;9.72e-14;1!UBERON:0002464;9.72e-14;1!UBERON:0004904;9.72e-14;1!UBERON:0001021;9.72e-14;1!UBERON:0009661;9.72e-14;1!UBERON:0002082;9.72e-14;1!UBERON:0002950;9.72e-14;1!UBERON:0001891;9.72e-14;1!UBERON:0001255;9.24e-08;2!UBERON:0001556;9.24e-08;2!UBERON:0003714;1.64e-07;2!UBERON:0005162;1.64e-07;2!UBERON:0000122;1.64e-07;2!UBERON:0002456;1.64e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000989,3.50e-14,1;UBERON:0008811,3.50e-14,1;UBERON:0006258,3.50e-14,1;UBERON:0005876,3.50e-14,1;UBERON:0004874,3.50e-14,1;UBERON:0000998,3.98e-14,1;UBERON:0006868,3.98e-14,1;UBERON:0000941,9.73e-14,1;UBERON:0001785,9.73e-14,1;UBERON:0002464,9.73e-14,1;UBERON:0004904,9.73e-14,1;UBERON:0001021,9.73e-14,1;UBERON:0003902,9.73e-14,1;UBERON:0005425,9.73e-14,1;UBERON:0002084,1.10e-13,1;UBERON:0002082,1.10e-13,1;UBERON:0010226,1.10e-13,1;UBERON:0002038,1.25e-13,1;UBERON:0009661,1.25e-13,1;UBERON:0002950,1.25e-13,1;UBERON:0001891,1.25e-13,1;UBERON:0009616,1.25e-13,1;UBERON:0010286,1.25e-13,1;UBERON:0001255,9.25e-08,2;UBERON:0001556,9.25e-08,2;UBERON:0003714,1.64e-07,2;UBERON:0005162,1.64e-07,2;UBERON:0000122,1.64e-07,2;UBERON:0002456,2.25e-07,2 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0.697801167972428,0,0,0,0,0,0,0,0,0,0,0,0,0,0.251085279189606,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0,0.223915474239924,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188242339542605,0,0,0,0,0,0,0.199463657621632,0.426224750532694,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167186495390678,0,0,0,0,0,0,0,0.128091319725675,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.267440195783507,0,0,0,0,0.361439152384566,0,0.144846518960824,0,0,0.0945348171640679,0,0,0,0,0,0,0.696518949197069,0,0,0,0,0.198762407366705,0,0,0,0,0,0.417989933073621,0,0,0,0,0,0,0,0,0,0.22452937262617,0,0,0,0,0,0,0,0.496971951695318,0.12663051166458,0,0,0,0.560677600142307,1.06748995729705,0,0,0,0.163461903113459,0,0,0,0,0,0,0,0,0,0,0.122834317311768,0,0,0,0,0,0,0,0,0,0,0.150238058906597,0.340296549480063,0.179389635688862,0,0,0,0,0,0,0,0,0.252433774244115,0.276149695926898,0,0.355009592516614,0,0,0,0,0,0,0,0,0,0.252320850875628,0,1.56449532329816,0,0,0,0,0.236613600079688,0,0.241011029883482,0,0,0.237270619111097,0.539325232640658,0.392442930250692,0,0,0,0,0,0,0,0,0,0,0.171567810298526,0.219500570817251,0,0,0,0,0,0,0,0,0.144366447761074,0,0,0,0,0.246217006087397,0.234004265139238,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112131084345361,0,0.07333828582095,0,0,0,0.26593811658487,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179060963239896,0,0,0,0,0,0,0,0,0,0,0,0,0,0.500170521059677,0,0.207970861530807,0.178428988797162,0.157702415033935,0,0,0,0,0,0,0.0868836144680828,0.195801157462741,0,0,0,0.106727557803444,0,0,0,0,0,0,0,0,0.160853921143607,0,0,0,0.164254312027618,0,0,0,0.200506470303285,0.0920809889358963,0,0,0.131124414959424,0,0,0,0,0,0,0,0,0,0.270946437543853,0,0,0,0,0,0,0,0,0.325378394664303,0,0.183138929636687,0,0,0,0,0,0,0,0.137836572484531,0,0,0,0,0.165284915360978,0,0,0,0,0,0,0,0.532306030317022,0,0.18532421910392,0.143124886741991,0,0.632758849437452,0,0,0,0,0,0,0,0,0.404364963146632,0,0,0,0,1.05650146756755,0,0,0,0,0,0,0,0,1.01455188481352,0,0.563391205064483,0,0,0.7133421029625,0.354761064070598,0.211107635297664,0,0,0,0.192444225451024,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169291777801603,0,0,0.425846237690326,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.921482106297696,0,0.281338832821026,0,0,0.211125408127993,0,0,0,0.102268682502155,0,0,0,0,0.511572370226872,3.35387579165574,0,0,0,0.185536196323703,0,0,0,0,0,0,0.236387681767936,0,0,0,0,0.482385754501632,0,0.110579259931225,0,0,0,0,0.846452843541768,0,0,0,0,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0.163232808159148,0.141353071433941,0,0.995261931078505,0.442287822516696,1.83309043480088,0,0,0,0.404406797884062,0,0.234264445725339,0,0,0,0.789168805698781,0,0,0.189559738885464,0,0,0,0,0,0,0,0,0,0,0,0.34945333648406,0,0,0.0730893170861856,0,1.45483524732629,0,0,0.137041924646751,0,0,0,0,0.426905989478705,0,0,0,0,0.14405479798815,0,0.471388069233591,0,0.104602846312333,0,0,0,0.547621515567972,0,0,0,0.558564802544508,0.229160424011684,0,0,0,0,0,1.08089965062721,0,0,0,0.0674035438541849,0.0984274815147488,0.0846733320657845,0,0.544813624446302,0,0.137539436597234,0,0,0,0.0607495566580247,0,0.157611414598396,0,0,0,0.191915197319445,0,1.32418394073086,0,0.542999601753713,0.864221491201268,0,0,0,0.170388021785422,0.226624183040251,0.146552233678082,0,0.387848869084652,0.13223260174269,0.171086837884329,0,0,0,0.414239055347196,0,0,0,0,0,0,0,0,0,0,0.366078794705889,0,0,0.443716206147409,0,0,0,0,0,0.235265819698172,0,0,0,0,0,0,0,0,0.228840068396924,0,0,0,0,0,0.310525913752519,0,0,0,0.150257608997218,0.380805212168795,0,0,0.107410557042488,0,0,0,0.343395705182793,0,0,0.57785949122191,0.214441591374926,0,0.226705925512272,0,0.244736704506468,0,0,0,0.176689145945881,0.192914038270915,0,0,0.345430341731199,0,0.414775308455192,0,0,0,0,0,0,0,0.106691729694141,0,0,0,0,0,0,0,0,0,0.169732529954025,0,0.123935764259002,0,0.636008701306837,0,0,0.352675943690684,0.3062454773532,0.192687675289379,0,0.638535436228605,0,0,0,0.484426936895553,1.42769420259154,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0675375846183947,0,0.206686796501184,0,0,0,2.48105589194647,0,0,0,0,0,0,0.177404740325278,0,0,0,0.131545547125698,0,0,0.627944742804112,0.942693539496011,0,1.82631744101899,0,0,0.0714765441766563,0,0,0,0.801711364730253,0,0,0,0.430227358820278,0,0,2.11693525095465,0,0,0,0,0,0,0,0,0,0,0.233939463462106,0,0,0,0,0,0,0,0,1.96118657403124,0,0.981542335574726,0.297046400327086,0,0.509781344063451,0,0,0,0,0.352894871715692,0,1.46067277649303,0,1.29005624836306,0,0.0679914901909147,0,0,0,0,0,0,0,0,0,0,0,0.752122617877125,0.0757786982182394,0.267964130156178,0,0.827463966895162,0,0,0,0,0,0.0636471582781649,0,0,0,0,0.143444410785353,0,0,0,0,0,0,0.488965776731466,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0.697801167972428,0,0,0,0,0,0,0,0,0,0,0,0,0,0.251085279189606,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0,0.223915474239924,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188242339542605,0,0,0,0,0,0,0.199463657621632,0.426224750532694,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167186495390678,0,0,0,0,0,0,0,0.128091319725675,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.267440195783507,0,0,0,0,0.361439152384566,0,0.144846518960824,0,0,0.0945348171640679,0,0,0,0,0,0,0.696518949197069,0,0,0,0,0.198762407366705,0,0,0,0,0,0.417989933073621,0,0,0,0,0,0,0,0,0,0.22452937262617,0,0,0,0,0,0,0,0.496971951695318,0.12663051166458,0,0,0,0.560677600142307,1.06748995729705,0,0,0,0.163461903113459,0,0,0,0,0,0,0,0,0,0,0.122834317311768,0,0,0,0,0,0,0,0,0,0,0.150238058906597,0.340296549480063,0.179389635688862,0,0,0,0,0,0,0,0,0.252433774244115,0.276149695926898,0,0.355009592516614,0,0,0,0,0,0,0,0,0,0.252320850875628,0,1.56449532329816,0,0,0,0,0.236613600079688,0,0.241011029883482,0,0,0.237270619111097,0.539325232640658,0.392442930250692,0,0,0,0,0,0,0,0,0,0,0.171567810298526,0.219500570817251,0,0,0,0,0,0,0,0,0.144366447761074,0,0,0,0,0.246217006087397,0.234004265139238,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112131084345361,0,0.07333828582095,0,0,0,0.26593811658487,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179060963239896,0,0,0,0,0,0,0,0,0,0,0,0,0,0.500170521059677,0,0.207970861530807,0.178428988797162,0.157702415033935,0,0,0,0,0,0,0.0868836144680828,0.195801157462741,0,0,0,0.106727557803444,0,0,0,0,0,0,0,0,0.160853921143607,0,0,0,0.164254312027618,0,0,0,0.200506470303285,0.0920809889358963,0,0,0.131124414959424,0,0,0,0,0,0,0,0,0,0.270946437543853,0,0,0,0,0,0,0,0,0.325378394664303,0,0.183138929636687,0,0,0,0,0,0,0,0.137836572484531,0,0,0,0,0.165284915360978,0,0,0,0,0,0,0,0.532306030317022,0,0.18532421910392,0.143124886741991,0,0.632758849437452,0,0,0,0,0,0,0,0,0.404364963146632,0,0,0,0,1.05650146756755,0,0,0,0,0,0,0,0,1.01455188481352,0,0.563391205064483,0,0,0.7133421029625,0.354761064070598,0.211107635297664,0,0,0,0.192444225451024,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169291777801603,0,0,0.425846237690326,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.921482106297696,0,0.281338832821026,0,0,0.211125408127993,0,0,0,0.102268682502155,0,0,0,0,0.511572370226872,3.35387579165574,0,0,0,0.185536196323703,0,0,0,0,0,0,0.236387681767936,0,0,0,0,0.482385754501632,0,0.110579259931225,0,0,0,0,0.846452843541768,0,0,0,0,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0.163232808159148,0.141353071433941,0,0.995261931078505,0.442287822516696,1.83309043480088,0,0,0,0.404406797884062,0,0.234264445725339,0,0,0,0.789168805698781,0,0,0.189559738885464,0,0,0,0,0,0,0,0,0,0,0,0.34945333648406,0,0,0.0730893170861856,0,1.45483524732629,0,0,0.137041924646751,0,0,0,0,0.426905989478705,0,0,0,0,0.14405479798815,0,0.471388069233591,0,0.104602846312333,0,0,0,0.547621515567972,0,0,0,0.558564802544508,0.229160424011684,0,0,0,0,0,1.08089965062721,0,0,0,0.0674035438541849,0.0984274815147488,0.0846733320657845,0,0.544813624446302,0,0.137539436597234,0,0,0,0.0607495566580247,0,0.157611414598396,0,0,0,0.191915197319445,0,1.32418394073086,0,0.542999601753713,0.864221491201268,0,0,0,0.170388021785422,0.226624183040251,0.146552233678082,0,0.387848869084652,0.13223260174269,0.171086837884329,0,0,0,0.414239055347196,0,0,0,0,0,0,0,0,0,0,0.366078794705889,0,0,0.443716206147409,0,0,0,0,0,0.235265819698172,0,0,0,0,0,0,0,0,0.228840068396924,0,0,0,0,0,0.310525913752519,0,0,0,0.150257608997218,0.380805212168795,0,0,0.107410557042488,0,0,0,0.343395705182793,0,0,0.57785949122191,0.214441591374926,0,0.226705925512272,0,0.244736704506468,0,0,0,0.176689145945881,0.192914038270915,0,0,0.345430341731199,0,0.414775308455192,0,0,0,0,0,0,0,0.106691729694141,0,0,0,0,0,0,0,0,0,0.169732529954025,0,0.123935764259002,0,0.636008701306837,0,0,0.352675943690684,0.3062454773532,0.192687675289379,0,0.638535436228605,0,0,0,0.484426936895553,1.42769420259154,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0675375846183947,0,0.206686796501184,0,0,0,2.48105589194647,0,0,0,0,0,0,0.177404740325278,0,0,0,0.131545547125698,0,0,0.627944742804112,0.942693539496011,0,1.82631744101899,0,0,0.0714765441766563,0,0,0,0.801711364730253,0,0,0,0.430227358820278,0,0,2.11693525095465,0,0,0,0,0,0,0,0,0,0,0.233939463462106,0,0,0,0,0,0,0,0,1.96118657403124,0,0.981542335574726,0.297046400327086,0,0.509781344063451,0,0,0,0,0.352894871715692,0,1.46067277649303,0,1.29005624836306,0,0.0679914901909147,0,0,0,0,0,0,0,0,0,0,0,0.752122617877125,0.0757786982182394,0.267964130156178,0,0.827463966895162,0,0,0,0,0,0.0636471582781649,0,0,0,0,0.143444410785353,0,0,0,0,0,0,0.488965776731466,0,0,0,0 | ||
|short_description=p@chr1:201452734..201452760,- | |short_description=p@chr1:201452734..201452760,- | ||
}} | }} |
Latest revision as of 02:09, 28 July 2015
Short description: | p@chr1:201452734..201452760, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:201452734..201452760, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
smooth muscle cell of the internal thoracic artery | 2.25e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
penis | 3.50e-14 | 1 |
intromittent organ | 3.50e-14 | 1 |
lateral plate mesenchyme | 3.50e-14 | 1 |
undifferentiated genital tubercle | 3.50e-14 | 1 |
somatopleure | 3.50e-14 | 1 |
seminal vesicle | 3.98e-14 | 1 |
seminal fluid secreting gland | 3.98e-14 | 1 |
cranial nerve II | 9.73e-14 | 1 |
cranial nerve | 9.73e-14 | 1 |
nerve trunk | 9.73e-14 | 1 |
nerve connecting eye with brain | 9.73e-14 | 1 |
nerve | 9.73e-14 | 1 |
retinal neural layer | 9.73e-14 | 1 |
presumptive neural retina | 9.73e-14 | 1 |
heart left ventricle | 1.10e-13 | 1 |
cardiac ventricle | 1.10e-13 | 1 |
future cardiac ventricle | 1.10e-13 | 1 |
substantia nigra | 1.25e-13 | 1 |
midbrain nucleus | 1.25e-13 | 1 |
regional part of midbrain | 1.25e-13 | 1 |
midbrain | 1.25e-13 | 1 |
presumptive midbrain | 1.25e-13 | 1 |
midbrain neural tube | 1.25e-13 | 1 |
urinary bladder | 9.25e-08 | 2 |
lower urinary tract | 9.25e-08 | 2 |
neural tissue | 1.64e-07 | 2 |
multi cell component structure | 1.64e-07 | 2 |
neuron projection bundle | 1.64e-07 | 2 |
internal thoracic artery | 2.25e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
liver cancer | 1.42e-13 | 1 |
mesenchymal cell neoplasm | 1.99e-07 | 2 |