FFCP PHASE1:Hg19::chr1:26228136..26228182,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=55bp_to_BC040585_5end | |association_with_transcript=55bp_to_BC040585_5end | ||
|cluster_id=chr1:26228136..26228182,- | |||
|coexpression_cluster_id=C3961 | |coexpression_cluster_id=C3961 | ||
|description=CAGE_peak_1_at_BC040585_5end | |description=CAGE_peak_1_at_BC040585_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000540;8.67e-07;6!CL:0000404;8.67e-07;6 | |ontology_enrichment_celltype_v019=CL:0000540;8.67e-07;6!CL:0000404;8.67e-07;6 | ||
|ontology_enrichment_celltype_v019_2=CL:0000540,3.74e-07,6;CL:0000031,3.74e-07,6;CL:0000404,3.74e-07,6 | |||
|ontology_enrichment_development_v019=CL:0000031;8.67e-07;6 | |ontology_enrichment_development_v019=CL:0000031;8.67e-07;6 | ||
|ontology_enrichment_disease=DOID:162!6.48e-19!235;DOID:14566!7.20e-18!239;DOID:2531!3.09e-13!51;DOID:0060083!3.09e-13!51;DOID:0050686!1.07e-12!137;DOID:1240!5.73e-11!39;DOID:8692!9.28e-09!31 | |ontology_enrichment_disease=DOID:162!6.48e-19!235;DOID:14566!7.20e-18!239;DOID:2531!3.09e-13!51;DOID:0060083!3.09e-13!51;DOID:0050686!1.07e-12!137;DOID:1240!5.73e-11!39;DOID:8692!9.28e-09!31 | ||
|ontology_enrichment_disease_v019=DOID:8692;1.41e-10;31!DOID:2531;5.24e-10;51!DOID:0060083;5.24e-10;51!DOID:1240;2.24e-09;39 | |ontology_enrichment_disease_v019=DOID:8692;1.41e-10;31!DOID:2531;5.24e-10;51!DOID:0060083;5.24e-10;51!DOID:1240;2.24e-09;39 | ||
|ontology_enrichment_disease_v019_2=DOID:2531,2.71e-14,51;DOID:0060083,2.71e-14,51;DOID:1240,4.17e-12,39;DOID:162,5.55e-12,235;DOID:14566,3.25e-11,239;DOID:8692,1.10e-10,31;DOID:0050686,6.17e-10,137 | |||
|ontology_enrichment_uberon=UBERON:0001017!5.17e-15!82;UBERON:0000073!2.69e-14!94;UBERON:0001016!2.69e-14!94;UBERON:0005743!1.40e-13!86;UBERON:0001049!5.51e-12!57;UBERON:0005068!5.51e-12!57;UBERON:0006241!5.51e-12!57;UBERON:0007135!5.51e-12!57;UBERON:0000955!1.47e-11!69;UBERON:0006238!1.47e-11!69;UBERON:0002020!4.49e-11!34;UBERON:0003528!4.49e-11!34;UBERON:0002619!4.47e-10!22;UBERON:0002791!5.76e-10!33;UBERON:0001893!7.42e-10!34;UBERON:0002780!9.34e-10!41;UBERON:0001890!9.34e-10!41;UBERON:0006240!9.34e-10!41;UBERON:0002346!1.15e-09!90;UBERON:0000956!1.58e-09!25;UBERON:0000203!1.58e-09!25;UBERON:0001869!1.70e-09!32;UBERON:0002616!3.83e-09!59;UBERON:0003080!4.07e-09!42;UBERON:0001950!6.78e-09!20;UBERON:0003075!1.37e-08!86;UBERON:0007284!1.37e-08!86;UBERON:0000924!2.25e-08!173;UBERON:0006601!2.25e-08!173;UBERON:0004121!1.59e-07!169;UBERON:0003056!6.56e-07!61 | |ontology_enrichment_uberon=UBERON:0001017!5.17e-15!82;UBERON:0000073!2.69e-14!94;UBERON:0001016!2.69e-14!94;UBERON:0005743!1.40e-13!86;UBERON:0001049!5.51e-12!57;UBERON:0005068!5.51e-12!57;UBERON:0006241!5.51e-12!57;UBERON:0007135!5.51e-12!57;UBERON:0000955!1.47e-11!69;UBERON:0006238!1.47e-11!69;UBERON:0002020!4.49e-11!34;UBERON:0003528!4.49e-11!34;UBERON:0002619!4.47e-10!22;UBERON:0002791!5.76e-10!33;UBERON:0001893!7.42e-10!34;UBERON:0002780!9.34e-10!41;UBERON:0001890!9.34e-10!41;UBERON:0006240!9.34e-10!41;UBERON:0002346!1.15e-09!90;UBERON:0000956!1.58e-09!25;UBERON:0000203!1.58e-09!25;UBERON:0001869!1.70e-09!32;UBERON:0002616!3.83e-09!59;UBERON:0003080!4.07e-09!42;UBERON:0001950!6.78e-09!20;UBERON:0003075!1.37e-08!86;UBERON:0007284!1.37e-08!86;UBERON:0000924!2.25e-08!173;UBERON:0006601!2.25e-08!173;UBERON:0004121!1.59e-07!169;UBERON:0003056!6.56e-07!61 | ||
|ontology_enrichment_uberon_v019=UBERON:0000956;3.45e-12;25!UBERON:0000203;3.45e-12;25!UBERON:0002619;5.76e-12;22!UBERON:0003528;7.92e-12;34!UBERON:0002020;7.92e-12;34!UBERON:0002791;1.22e-11;32!UBERON:0001869;8.30e-11;32!UBERON:0002780;1.65e-10;41!UBERON:0001890;1.65e-10;41!UBERON:0001950;3.43e-10;20!UBERON:0001893;8.15e-10;34!UBERON:0000073;1.00e-07;53!UBERON:0002616;1.00e-07;53!UBERON:0000955;1.55e-07;68!UBERON:0001017;4.45e-07;75!UBERON:0001016;5.02e-07;83 | |ontology_enrichment_uberon_v019=UBERON:0000956;3.45e-12;25!UBERON:0000203;3.45e-12;25!UBERON:0002619;5.76e-12;22!UBERON:0003528;7.92e-12;34!UBERON:0002020;7.92e-12;34!UBERON:0002791;1.22e-11;32!UBERON:0001869;8.30e-11;32!UBERON:0002780;1.65e-10;41!UBERON:0001890;1.65e-10;41!UBERON:0001950;3.43e-10;20!UBERON:0001893;8.15e-10;34!UBERON:0000073;1.00e-07;53!UBERON:0002616;1.00e-07;53!UBERON:0000955;1.55e-07;68!UBERON:0001017;4.45e-07;75!UBERON:0001016;5.02e-07;83 | ||
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|phase1_expression=0,0,0,0,0.446961094427288,0,0,0,0,0.737201809504527,0,0.436882744260345,0.263766978228454,0,0,0.672325146451775,0,0.730310090387373,0,0.861847406537515,0,0.313454721478088,0,1.09499540058307,1.00434111675842,0.687720651731561,0.738905305049512,0.865818594450472,0,0.383829398097213,0,1.83884244895785,0.6024118375565,0.739508020333575,1.00707360754392,0.710846162437108,0.880801318004542,0,0,0,0,0,0.257575567634187,0,0,0,0,0,0.309706370895104,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.426730222566507,0,0,0,0,0.569212969109448,0,0,0,0,1.58030450865046,0,0.393010762749165,0,0,0,0,0,0.334231370655521,0.294605907474837,0,0,0,0.390178042679635,0.986627427622057,0.829050053357545,1.15921234294021,0,0.535081656179426,0,0.906474741580529,0,0.34362744548263,0,0.318565414324097,0.651083453856419,0,0.301150238155546,0,0,0,0,0,0.534880391567015,0,0,0,0.12786256184353,0,0,0.289693037921647,0,0,1.03988298880475,1.77383517970051,1.22968699970376,0.458426764241994,0,0,0,0,0,0.238490624305342,0,1.11437250398869,0.596287222100115,0,0,0,0.419499436209906,0.550236083880135,0,0.775250277507987,0.35576626268671,0,0,0.760272105718513,0.976248230192678,0.367663080345869,0.81014194788176,0.625098097988558,1.12264686313085,0.563057402416611,0,0.949265659568129,1.46561395144326,0,0,0.872188104285069,0,0.379891534993739,0,0.573673241497627,0,0,0,0,0,0.404132016209064,0.326923806226917,0.151357427644931,0.576175924479999,0.234321431833797,0,0,0.448346041655403,1.40921398372518,1.45685649931318,1.68540968042698,0,2.21101771161182,0,1.18800285728205,0,0,0,2.69337782326506,0.500474079487857,0,2.63386572528503,0,0.300476117813194,0.113432183160021,1.79389635688862,0.427114777637135,0.211931901159562,0.300091096084402,0.206105058476878,0,0.18611685633159,0.506328996723799,0.292311015483596,0.252433774244115,0.0920498986422993,0.161646056818812,0,0.604512589365842,0.847802961552438,0.386521706326594,0.272746120590835,0.286804595389004,1.21973706129595,0.530119073285941,1.04574548582567,1.65857688024593,0.504641701751257,4.37972830890996,0,0,1.38134921352481,0,1.44375896333917,1.41968160047813,1.01150814046861,0.241011029883482,1.21323370005633,0.653638332277218,0.71181185733329,1.75280700608214,0.98110732562673,1.53898862778556,0,0,0.4115740113314,1.47008711385542,0,0.982827216677626,0.590789906681404,3.5317047953172,0.122988438543114,0.343135620597051,0.109750285408626,0,0.804231779293047,0.370353780634118,0,1.03993478527958,0,0.695582429850461,0.117408694235822,1.73239737313289,0.925971025153221,0.761016608938393,0,0.858486162094873,0,0.234004265139238,0.445893486866185,0.93733833986777,0.503946384596579,0.283550194484773,0.179117045405697,0.581267877027924,0.383382679165211,0,0.264145302039678,0,0.288239906833923,0.25248486685276,0.571481048629521,0.381988425558278,0,0,0.822619941626588,1.50171528921959,0,0,0.87192013766656,1.24675085895615,0.129271715757778,0,0.845302752556,0,0,0.514414748524284,0,0.266422179016099,0.142977993658148,0,0,0,0.355391948742546,1.58390374586686,0.301439377059586,0,0.299918973546171,0,0.502257091432126,4.21667878966063,0,2.29723871668228,2.85273810081437,0.579125226670317,0.410952645100767,0.358121926479791,2.4658731678576,0,0,0,0.508189248444927,0,6.95959931499926,2.84777651068393,7.65526501983796,0,0,0.414415513436035,0,2.00068208423871,0,0.207970861530807,0.713715955188647,0.630809660135739,1.05427273493442,0,2.27407504055985,0,1.32845119707087,1.47495334833363,0.260650843404249,0,0,0,0,0.106727557803444,0,0,0.30239029332968,0,0.153461973288062,0,0,0,0.160853921143607,0,1.23367755042124,0.710246901252508,0.9033987161519,1.03850885836724,0.813472649219715,0.241718899183244,0.200506470303285,0.184161977871793,0.229628896329213,0.364182336013434,0.393373244878272,0,0.693138033939733,0,0,0.633309773357254,1.13733384070897,0,5.18198198645135,0,0.541892875087706,0.501689773854853,1.01950509218015,0,0.671624264166535,0.219259876645935,0.522870902049801,0.512900250232778,0,0,0.206082023295445,2.38080608527693,1.07262349896764,0,0.650060246036521,1.6068392984416,0,1.54048617114644,0.767518373630648,1.51620229732984,0.322260734604821,0.725083469571143,0.852266274161009,0.178064071293475,0.330569830721956,0.576570202095319,0,0,0,0,0,0,1.06461206063404,0,0.18532421910392,0.429374660225974,0,0.316379424718726,0,0,0,0.318203247925937,0.78494864019923,0.179872457583315,1.09814811894422,1.06031162111118,0,0,0.421258456238981,0.48763373908959,0,1.05650146756755,0.272999822815972,0.424216295861138,0,0.551365343546124,0,0,0,0.655894752046633,0,0.92947049429925,1.12678241012897,0.717056761020258,0,0,0.354761064070598,0,0,0,0.699869440489966,0.48111056362756,0.670302275535787,0,0,0,0,0,0,0,0.764637207142375,0,0,0,0,0,0,1.92283328029452,1.92495971052672,1.96032172784825,0.929015875628594,0.577076851905779,1.84968792705877,2.55082036366116,3.99158742865633,1.34053759092657,2.32840940996271,1.94773164164733,2.52717460302113,1.14117339516596,3.29027781123349,0,2.70866844482565,3.693525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| ||
|short_description=p1@BC040585 | |short_description=p1@BC040585 | ||
}} | }} |
Latest revision as of 06:30, 28 July 2015
Short description: | p1@BC040585 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_BC040585_5end |
Coexpression cluster: | C3961_duodenum_occipital_Neurons_merkel_mesenchymal_temporal_parietal |
Association with transcript: | 55bp_to_BC040585_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 3.74e-07 | 6 |
neuroblast | 3.74e-07 | 6 |
electrically signaling cell | 3.74e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 9.55e-19 | 81 |
nervous system | 2.53e-18 | 89 |
neural tube | 9.45e-15 | 56 |
neural rod | 9.45e-15 | 56 |
future spinal cord | 9.45e-15 | 56 |
neural keel | 9.45e-15 | 56 |
brain grey matter | 3.14e-14 | 34 |
gray matter | 3.14e-14 | 34 |
brain | 3.62e-13 | 68 |
future brain | 3.62e-13 | 68 |
regional part of forebrain | 5.35e-13 | 41 |
forebrain | 5.35e-13 | 41 |
anterior neural tube | 5.35e-13 | 41 |
future forebrain | 5.35e-13 | 41 |
regional part of telencephalon | 8.84e-13 | 32 |
regional part of nervous system | 1.01e-12 | 53 |
regional part of brain | 1.01e-12 | 53 |
neurectoderm | 1.67e-12 | 86 |
regional part of cerebral cortex | 5.73e-12 | 22 |
cerebral cortex | 6.77e-12 | 25 |
pallium | 6.77e-12 | 25 |
telencephalon | 1.38e-11 | 34 |
cerebral hemisphere | 2.27e-11 | 32 |
neural plate | 3.48e-11 | 82 |
presumptive neural plate | 3.48e-11 | 82 |
pre-chordal neural plate | 5.05e-11 | 61 |
neocortex | 3.59e-10 | 20 |
ectoderm-derived structure | 3.71e-10 | 171 |
ectoderm | 3.71e-10 | 171 |
presumptive ectoderm | 3.71e-10 | 171 |
ecto-epithelium | 2.42e-09 | 104 |
organ system subdivision | 6.90e-08 | 223 |
structure with developmental contribution from neural crest | 1.59e-07 | 132 |
Ontology term | p-value | n |
---|---|---|
hematologic cancer | 2.71e-14 | 51 |
immune system cancer | 2.71e-14 | 51 |
leukemia | 4.17e-12 | 39 |
cancer | 5.55e-12 | 235 |
disease of cellular proliferation | 3.25e-11 | 239 |
myeloid leukemia | 1.10e-10 | 31 |
organ system cancer | 6.17e-10 | 137 |