FFCP PHASE1:Hg19::chr2:104490799..104490827,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=10bp_to_ENST00000544869_5end | |association_with_transcript=10bp_to_ENST00000544869_5end | ||
|cluster_id=chr2:104490799..104490827,+ | |||
|coexpression_cluster_id=C545 | |||
|description=CAGE_peak_1_at_ENST00000544869_5end | |description=CAGE_peak_1_at_ENST00000544869_5end | ||
|id=chr2:104490799..104490827,+ | |id=chr2:104490799..104490827,+ | ||
|ontology_enrichment_celltype=CL:0000128!6.97e-28!7;CL:0000126!6.97e-28!7;CL:0000127!6.97e-28!7;CL:0002453!6.97e-28!7;CL:0002319!1.34e-27!25;CL:0002605!6.35e-25!3;CL:0000047!8.17e-25!8;CL:0000064!2.34e-23!3;CL:0005012!2.34e-23!3;CL:0000067!2.34e-23!3;CL:0002304!2.34e-23!3;CL:0000133!2.72e-19!59;CL:0000221!9.82e-16!71;CL:0000540!1.51e-12!6;CL:0000031!1.51e-12!6;CL:0000404!1.51e-12!6;CL:0000243!2.08e-11!15;CL:0000125!2.08e-11!15;CL:0000030!2.08e-11!15;CL:0000339!2.08e-11!15;CL:0002603!6.01e-11!3;CL:0000095!3.45e-10!17;CL:0000123!3.45e-10!17 | |ontology_enrichment_celltype=CL:0000128!6.97e-28!7;CL:0000126!6.97e-28!7;CL:0000127!6.97e-28!7;CL:0002453!6.97e-28!7;CL:0002319!1.34e-27!25;CL:0002605!6.35e-25!3;CL:0000047!8.17e-25!8;CL:0000064!2.34e-23!3;CL:0005012!2.34e-23!3;CL:0000067!2.34e-23!3;CL:0002304!2.34e-23!3;CL:0000133!2.72e-19!59;CL:0000221!9.82e-16!71;CL:0000540!1.51e-12!6;CL:0000031!1.51e-12!6;CL:0000404!1.51e-12!6;CL:0000243!2.08e-11!15;CL:0000125!2.08e-11!15;CL:0000030!2.08e-11!15;CL:0000339!2.08e-11!15;CL:0002603!6.01e-11!3;CL:0000095!3.45e-10!17;CL:0000123!3.45e-10!17 | ||
|ontology_enrichment_celltype_v019=CL:0002605;7.56e-39;3!CL:0002319;3.84e-29;25!CL:0000047;2.97e-26;2!CL:0000540;1.88e-19;6!CL:0000404;1.88e-19;6!CL:0000064;3.07e-17;3!CL:0000067;3.07e-17;3!CL:0005012;3.07e-17;3!CL:0002304;3.07e-17;3!CL:0000128;4.63e-17;7!CL:0000126;4.63e-17;7!CL:0000127;4.63e-17;7!CL:0000243;2.40e-07;15!CL:0000125;2.40e-07;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0000047,3.49e-39,8;CL:0002605,7.56e-39,3;CL:0002319,3.84e-29,25;CL:0000540,1.82e-19,6;CL:0000031,1.82e-19,6;CL:0000404,1.82e-19,6;CL:0000133,2.24e-19,59;CL:0000064,3.48e-17,3;CL:0000067,3.48e-17,3;CL:0005012,3.48e-17,3;CL:0002304,3.48e-17,3;CL:0000128,4.63e-17,7;CL:0000126,4.63e-17,7;CL:0000127,4.63e-17,7;CL:0002453,4.63e-17,7;CL:0000221,9.07e-16,72;CL:0000243,2.40e-07,15;CL:0000125,2.40e-07,15;CL:0000030,2.40e-07,15;CL:0000339,2.40e-07,15 | |||
|ontology_enrichment_development_v019=CL:0000031;1.88e-19;6!CL:0000133;3.93e-12;59!CL:0000339;2.40e-07;15 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001778!2.34e-23!3;UBERON:0001775!2.34e-23!3;UBERON:0001017!9.04e-21!82;UBERON:0005743!1.08e-19!86;UBERON:0000488!1.11e-17!4;UBERON:0000073!1.37e-17!94;UBERON:0001016!1.37e-17!94;UBERON:0004121!1.98e-14!169;UBERON:0000956!5.03e-14!25;UBERON:0000203!5.03e-14!25;UBERON:0000924!5.10e-14!173;UBERON:0006601!5.10e-14!173;UBERON:0003056!3.28e-13!61;UBERON:0003075!1.39e-12!86;UBERON:0007284!1.39e-12!86;UBERON:0000153!5.05e-12!129;UBERON:0007811!5.05e-12!129;UBERON:0002203!5.58e-12!6;UBERON:0001768!5.58e-12!6;UBERON:0002346!6.27e-12!90;UBERON:0000955!2.83e-11!69;UBERON:0006238!2.83e-11!69;UBERON:0007625!3.17e-11!11;UBERON:0000033!4.92e-11!123;UBERON:0001869!7.01e-11!32;UBERON:0002791!1.55e-10!33;UBERON:0002020!3.27e-10!34;UBERON:0003528!3.27e-10!34;UBERON:0001893!3.27e-10!34;UBERON:0001049!1.75e-09!57;UBERON:0005068!1.75e-09!57;UBERON:0006241!1.75e-09!57;UBERON:0007135!1.75e-09!57;UBERON:0002616!4.02e-09!59;UBERON:0001801!7.45e-09!14;UBERON:0002022!1.16e-08!1;UBERON:0002780!2.25e-08!41;UBERON:0001890!2.25e-08!41;UBERON:0006240!2.25e-08!41;UBERON:0003080!3.68e-08!42;UBERON:0002046!5.31e-07!5;UBERON:0004117!5.31e-07!5;UBERON:0007689!5.31e-07!5;UBERON:0007123!5.31e-07!5;UBERON:0003091!5.31e-07!5;UBERON:0002200!9.37e-07!11;UBERON:0006876!9.37e-07!11 | |ontology_enrichment_uberon=UBERON:0001778!2.34e-23!3;UBERON:0001775!2.34e-23!3;UBERON:0001017!9.04e-21!82;UBERON:0005743!1.08e-19!86;UBERON:0000488!1.11e-17!4;UBERON:0000073!1.37e-17!94;UBERON:0001016!1.37e-17!94;UBERON:0004121!1.98e-14!169;UBERON:0000956!5.03e-14!25;UBERON:0000203!5.03e-14!25;UBERON:0000924!5.10e-14!173;UBERON:0006601!5.10e-14!173;UBERON:0003056!3.28e-13!61;UBERON:0003075!1.39e-12!86;UBERON:0007284!1.39e-12!86;UBERON:0000153!5.05e-12!129;UBERON:0007811!5.05e-12!129;UBERON:0002203!5.58e-12!6;UBERON:0001768!5.58e-12!6;UBERON:0002346!6.27e-12!90;UBERON:0000955!2.83e-11!69;UBERON:0006238!2.83e-11!69;UBERON:0007625!3.17e-11!11;UBERON:0000033!4.92e-11!123;UBERON:0001869!7.01e-11!32;UBERON:0002791!1.55e-10!33;UBERON:0002020!3.27e-10!34;UBERON:0003528!3.27e-10!34;UBERON:0001893!3.27e-10!34;UBERON:0001049!1.75e-09!57;UBERON:0005068!1.75e-09!57;UBERON:0006241!1.75e-09!57;UBERON:0007135!1.75e-09!57;UBERON:0002616!4.02e-09!59;UBERON:0001801!7.45e-09!14;UBERON:0002022!1.16e-08!1;UBERON:0002780!2.25e-08!41;UBERON:0001890!2.25e-08!41;UBERON:0006240!2.25e-08!41;UBERON:0003080!3.68e-08!42;UBERON:0002046!5.31e-07!5;UBERON:0004117!5.31e-07!5;UBERON:0007689!5.31e-07!5;UBERON:0007123!5.31e-07!5;UBERON:0003091!5.31e-07!5;UBERON:0002200!9.37e-07!11;UBERON:0006876!9.37e-07!11 | ||
|ontology_enrichment_uberon_v019=UBERON:0001778;3.07e-17;3!UBERON:0001775;3.07e-17;3!UBERON:0000956;4.73e-17;25!UBERON:0000203;4.73e-17;25!UBERON:0000488;3.53e-13;4!UBERON:0002791;4.24e-13;32!UBERON:0001869;5.13e-13;32!UBERON:0003528;3.05e-12;34!UBERON:0002020;3.05e-12;34!UBERON:0001893;2.72e-11;34!UBERON:0002203;4.28e-09;6!UBERON:0001768;4.28e-09;6!UBERON:0002200;4.28e-09;6!UBERON:0002780;9.80e-09;41!UBERON:0001890;9.80e-09;41!UBERON:0000341;2.18e-07;2!UBERON:0000922;2.81e-07;49!UBERON:0001016;3.89e-07;83!UBERON:0000955;7.96e-07;68 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,3.05e-20,81;UBERON:0001016,4.03e-18,89;UBERON:0001778,3.48e-17,3;UBERON:0001775,3.48e-17,3;UBERON:0000956,4.66e-17,25;UBERON:0000203,4.66e-17,25;UBERON:0002791,2.23e-13,32;UBERON:0001869,2.23e-13,32;UBERON:0000488,3.87e-13,4;UBERON:0003528,1.35e-12,34;UBERON:0002020,1.35e-12,34;UBERON:0001893,1.35e-12,34;UBERON:0004121,2.28e-12,171;UBERON:0000924,2.28e-12,171;UBERON:0006601,2.28e-12,171;UBERON:0003056,4.77e-12,61;UBERON:0002780,1.93e-10,41;UBERON:0001890,1.93e-10,41;UBERON:0003080,1.93e-10,41;UBERON:0006240,1.93e-10,41;UBERON:0002203,4.55e-09,6;UBERON:0001768,4.55e-09,6;UBERON:0002200,4.55e-09,6;UBERON:0003075,8.64e-09,82;UBERON:0007284,8.64e-09,82;UBERON:0002346,2.40e-08,86;UBERON:0000955,3.60e-08,68;UBERON:0006238,3.60e-08,68;UBERON:0000073,4.85e-08,53;UBERON:0002616,4.85e-08,53;UBERON:0011216,1.13e-07,223;UBERON:0001049,1.35e-07,56;UBERON:0005068,1.35e-07,56;UBERON:0006241,1.35e-07,56;UBERON:0007135,1.35e-07,56;UBERON:0000341,2.25e-07,2;UBERON:0010371,9.10e-07,104 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0,0.313454721478088,85.0120881779238,23.9530243877547,36.5329081220876,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.17430079477356,1.10864698731282,0.087834785693126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.231860809950154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,32.5241119004753,10.4111883086097,11.5993321916654,9.54842712405788,10.8449587781038,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0927680981618513,1.99613798001194,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.53036380815245,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0607495566580247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.155262956876259,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.3183659753167,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.65764732625507,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.31020638566432,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.9271562130634,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.42838658878244,0,0,0.448527450322454,0,0.404234377916439,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0,0.313454721478088,85.0120881779238,23.9530243877547,36.5329081220876,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.17430079477356,1.10864698731282,0.087834785693126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.231860809950154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,32.5241119004753,10.4111883086097,11.5993321916654,9.54842712405788,10.8449587781038,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0927680981618513,1.99613798001194,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.53036380815245,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0607495566580247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.155262956876259,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.3183659753167,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.65764732625507,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.31020638566432,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.9271562130634,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.42838658878244,0,0,0.448527450322454,0,0.404234377916439,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p1@ENST00000544869 | |short_description=p1@ENST00000544869 | ||
}} | }} |
Latest revision as of 22:54, 28 July 2015
Short description: | p1@ENST00000544869 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_ENST00000544869_5end |
Coexpression cluster: | C545_Astrocyte_Neural_Neurons_parietal_neuroectodermal_occipital_temporal |
Association with transcript: | 10bp_to_ENST00000544869_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuronal stem cell | 3.49e-39 | 8 |
astrocyte of the cerebral cortex | 7.56e-39 | 3 |
neural cell | 3.84e-29 | 25 |
neuron | 1.82e-19 | 6 |
neuroblast | 1.82e-19 | 6 |
electrically signaling cell | 1.82e-19 | 6 |
neurectodermal cell | 2.24e-19 | 59 |
ciliated cell | 3.48e-17 | 3 |
ciliated epithelial cell | 3.48e-17 | 3 |
multi-ciliated epithelial cell | 3.48e-17 | 3 |
non-pigmented ciliary epithelial cell | 3.48e-17 | 3 |
oligodendrocyte | 4.63e-17 | 7 |
macroglial cell | 4.63e-17 | 7 |
astrocyte | 4.63e-17 | 7 |
oligodendrocyte precursor cell | 4.63e-17 | 7 |
ectodermal cell | 9.07e-16 | 72 |
glial cell (sensu Vertebrata) | 2.40e-07 | 15 |
glial cell | 2.40e-07 | 15 |
glioblast | 2.40e-07 | 15 |
glioblast (sensu Vertebrata) | 2.40e-07 | 15 |