FFCP PHASE1:Hg19::chr6:166399688..166399710,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=273bp_to_ENST00000535229,uc003qup.1_5end | |association_with_transcript=273bp_to_ENST00000535229,uc003qup.1_5end | ||
|cluster_id=chr6:166399688..166399710,- | |||
|description=CAGE_peak_1_at_ENST00000535229_5end,CAGE_peak_1_at_uc003qup.1_5end | |description=CAGE_peak_1_at_ENST00000535229_5end,CAGE_peak_1_at_uc003qup.1_5end | ||
|id=chr6:166399688..166399710,- | |id=chr6:166399688..166399710,- | ||
|ontology_enrichment_celltype=CL:0000148!3.07e-11!10;CL:0000541!3.07e-11!10;CL:0002567!5.54e-08!3;CL:0002150!8.34e-08!3;CL:0000861!8.34e-08!3;CL:0000147!1.21e-07!14 | |ontology_enrichment_celltype=CL:0000148!3.07e-11!10;CL:0000541!3.07e-11!10;CL:0002567!5.54e-08!3;CL:0002150!8.34e-08!3;CL:0000861!8.34e-08!3;CL:0000147!1.21e-07!14 | ||
|ontology_enrichment_celltype_v019=CL:0000148;5.55e-24;10!CL:0000147;7.24e-17;14!CL:0002567;1.60e-15;3!CL:0000710;1.60e-11;20!CL:0000075;2.74e-08;27 | |ontology_enrichment_celltype_v019=CL:0000148;5.55e-24;10!CL:0000147;7.24e-17;14!CL:0002567;1.60e-15;3!CL:0000710;1.60e-11;20!CL:0000075;2.74e-08;27 | ||
|ontology_enrichment_celltype_v019_2=CL:0000148,5.85e-24,10;CL:0000541,5.85e-24,10;CL:0000147,7.52e-17,14;CL:0002567,1.34e-15,3;CL:0000710,1.64e-11,20;CL:0000075,2.79e-08,27;CL:0000066,7.35e-07,253 | |||
|ontology_enrichment_development_v019=UBERON:0008947;1.40e-26;29!UBERON:0006215;3.87e-15;3 | |ontology_enrichment_development_v019=UBERON:0008947;1.40e-26;29!UBERON:0006215;3.87e-15;3 | ||
|ontology_enrichment_disease=DOID:0050687!9.87e-07!143 | |ontology_enrichment_disease=DOID:0050687!9.87e-07!143 | ||
|ontology_enrichment_disease_v019=DOID:1909;6.42e-11;2 | |ontology_enrichment_disease_v019=DOID:1909;6.42e-11;2 | ||
|ontology_enrichment_disease_v019_2=DOID:305,2.76e-11,106;DOID:1909,8.23e-11,2;DOID:0050687,1.76e-09,143 | |||
|ontology_enrichment_uberon=UBERON:0001049!1.42e-28!57;UBERON:0005068!1.42e-28!57;UBERON:0006241!1.42e-28!57;UBERON:0007135!1.42e-28!57;UBERON:0002616!2.70e-27!59;UBERON:0002780!3.56e-27!41;UBERON:0001890!3.56e-27!41;UBERON:0006240!3.56e-27!41;UBERON:0003080!2.30e-26!42;UBERON:0000955!2.48e-23!69;UBERON:0006238!2.48e-23!69;UBERON:0001017!4.43e-21!82;UBERON:0001737!8.45e-21!9;UBERON:0005743!1.13e-19!86;UBERON:0002619!1.15e-19!22;UBERON:0007023!2.03e-19!115;UBERON:0001950!2.39e-19!20;UBERON:0001893!1.36e-18!34;UBERON:0000073!3.54e-18!94;UBERON:0001016!3.54e-18!94;UBERON:0001869!4.68e-18!32;UBERON:0002346!2.30e-17!90;UBERON:0003075!2.48e-17!86;UBERON:0007284!2.48e-17!86;UBERON:0002791!3.26e-17!33;UBERON:0000956!6.74e-17!25;UBERON:0000203!6.74e-17!25;UBERON:0002020!1.23e-16!34;UBERON:0003528!1.23e-16!34;UBERON:0003056!5.25e-16!61;UBERON:0000477!2.84e-13!286;UBERON:0000033!6.51e-12!123;UBERON:0001894!2.52e-11!7;UBERON:0006222!2.52e-11!7;UBERON:0000153!5.99e-11!129;UBERON:0007811!5.99e-11!129;UBERON:0008947!3.30e-10!38;UBERON:0003258!3.30e-10!38;UBERON:0003296!6.37e-10!4;UBERON:0010133!6.37e-10!4;UBERON:0000025!2.96e-09!194;UBERON:0000924!4.81e-09!173;UBERON:0006601!4.81e-09!173;UBERON:0001871!4.85e-09!7;UBERON:0004121!7.87e-09!169;UBERON:0000200!9.65e-09!6;UBERON:0001557!9.86e-09!19;UBERON:0000481!3.25e-08!347;UBERON:0000072!9.11e-08!46;UBERON:0001872!4.23e-07!5;UBERON:0002771!4.69e-07!3;UBERON:0004111!5.89e-07!241 | |ontology_enrichment_uberon=UBERON:0001049!1.42e-28!57;UBERON:0005068!1.42e-28!57;UBERON:0006241!1.42e-28!57;UBERON:0007135!1.42e-28!57;UBERON:0002616!2.70e-27!59;UBERON:0002780!3.56e-27!41;UBERON:0001890!3.56e-27!41;UBERON:0006240!3.56e-27!41;UBERON:0003080!2.30e-26!42;UBERON:0000955!2.48e-23!69;UBERON:0006238!2.48e-23!69;UBERON:0001017!4.43e-21!82;UBERON:0001737!8.45e-21!9;UBERON:0005743!1.13e-19!86;UBERON:0002619!1.15e-19!22;UBERON:0007023!2.03e-19!115;UBERON:0001950!2.39e-19!20;UBERON:0001893!1.36e-18!34;UBERON:0000073!3.54e-18!94;UBERON:0001016!3.54e-18!94;UBERON:0001869!4.68e-18!32;UBERON:0002346!2.30e-17!90;UBERON:0003075!2.48e-17!86;UBERON:0007284!2.48e-17!86;UBERON:0002791!3.26e-17!33;UBERON:0000956!6.74e-17!25;UBERON:0000203!6.74e-17!25;UBERON:0002020!1.23e-16!34;UBERON:0003528!1.23e-16!34;UBERON:0003056!5.25e-16!61;UBERON:0000477!2.84e-13!286;UBERON:0000033!6.51e-12!123;UBERON:0001894!2.52e-11!7;UBERON:0006222!2.52e-11!7;UBERON:0000153!5.99e-11!129;UBERON:0007811!5.99e-11!129;UBERON:0008947!3.30e-10!38;UBERON:0003258!3.30e-10!38;UBERON:0003296!6.37e-10!4;UBERON:0010133!6.37e-10!4;UBERON:0000025!2.96e-09!194;UBERON:0000924!4.81e-09!173;UBERON:0006601!4.81e-09!173;UBERON:0001871!4.85e-09!7;UBERON:0004121!7.87e-09!169;UBERON:0000200!9.65e-09!6;UBERON:0001557!9.86e-09!19;UBERON:0000481!3.25e-08!347;UBERON:0000072!9.11e-08!46;UBERON:0001872!4.23e-07!5;UBERON:0002771!4.69e-07!3;UBERON:0004111!5.89e-07!241 | ||
|ontology_enrichment_uberon_v019=UBERON:0001737;2.07e-43;9!UBERON:0001557;2.07e-43;9!UBERON:0003296;8.17e-20;4!UBERON:0010133;8.17e-20;4!UBERON:0000072;4.37e-18;37!UBERON:0000065;8.99e-15;44!UBERON:0001894;2.18e-11;7!UBERON:0001905;2.59e-11;2!UBERON:0002757;2.59e-11;2!UBERON:0010134;2.59e-11;2!UBERON:0005408;2.59e-11;2!UBERON:0001899;2.59e-11;2!UBERON:0000007;2.93e-10;2!UBERON:0002037;8.26e-08;6 | |ontology_enrichment_uberon_v019=UBERON:0001737;2.07e-43;9!UBERON:0001557;2.07e-43;9!UBERON:0003296;8.17e-20;4!UBERON:0010133;8.17e-20;4!UBERON:0000072;4.37e-18;37!UBERON:0000065;8.99e-15;44!UBERON:0001894;2.18e-11;7!UBERON:0001905;2.59e-11;2!UBERON:0002757;2.59e-11;2!UBERON:0010134;2.59e-11;2!UBERON:0005408;2.59e-11;2!UBERON:0001899;2.59e-11;2!UBERON:0000007;2.93e-10;2!UBERON:0002037;8.26e-08;6 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,9.57e-44,9;UBERON:0001557,6.70e-20,19;UBERON:0003296,7.79e-20,4;UBERON:0010133,7.79e-20,4;UBERON:0008947,1.06e-19,38;UBERON:0003258,1.06e-19,38;UBERON:0000072,2.16e-15,47;UBERON:0000065,4.89e-13,54;UBERON:0001894,2.12e-11,7;UBERON:0006222,2.12e-11,7;UBERON:0001905,2.73e-11,2;UBERON:0002757,2.73e-11,2;UBERON:0010134,2.73e-11,2;UBERON:0005408,2.73e-11,2;UBERON:0001899,2.73e-11,2;UBERON:0000007,2.66e-10,2;UBERON:0001004,8.76e-09,74;UBERON:0000073,1.48e-08,53;UBERON:0002616,1.48e-08,53;UBERON:0001041,2.28e-08,87;UBERON:0001049,5.34e-08,56;UBERON:0005068,5.34e-08,56;UBERON:0006241,5.34e-08,56;UBERON:0007135,5.34e-08,56;UBERON:0011216,5.50e-08,223;UBERON:0002037,8.77e-08,6;UBERON:0006215,8.77e-08,6 | |||
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| ||
|short_description=p1@ENST00000535229,p1@uc003qup.1 | |short_description=p1@ENST00000535229,p1@uc003qup.1 | ||
}} | }} |
Latest revision as of 22:02, 30 July 2015
Short description: | p1@ENST00000535229, p1@uc003qup.1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_ENST00000535229_5end, CAGE_peak_1_at_uc003qup.1_5end |
Coexpression cluster: | NA |
Association with transcript: | 273bp_to_ENST00000535229, uc003qup.1_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
melanocyte | 5.85e-24 | 10 |
melanoblast | 5.85e-24 | 10 |
pigment cell | 7.52e-17 | 14 |
light melanocyte | 1.34e-15 | 3 |
neurecto-epithelial cell | 1.64e-11 | 20 |
columnar/cuboidal epithelial cell | 2.79e-08 | 27 |
epithelial cell | 7.35e-07 | 253 |
Ontology term | p-value | n |
---|---|---|
larynx | 9.57e-44 | 9 |
upper respiratory tract | 6.70e-20 | 19 |
gland of diencephalon | 7.79e-20 | 4 |
neuroendocrine gland | 7.79e-20 | 4 |
respiratory primordium | 1.06e-19 | 38 |
endoderm of foregut | 1.06e-19 | 38 |
segment of respiratory tract | 2.16e-15 | 47 |
respiratory tract | 4.89e-13 | 54 |
diencephalon | 2.12e-11 | 7 |
future diencephalon | 2.12e-11 | 7 |
pineal body | 2.73e-11 | 2 |
regional part of epithalamus | 2.73e-11 | 2 |
secretory circumventricular organ | 2.73e-11 | 2 |
circumventricular organ | 2.73e-11 | 2 |
epithalamus | 2.73e-11 | 2 |
pituitary gland | 2.66e-10 | 2 |
respiratory system | 8.76e-09 | 74 |
regional part of nervous system | 1.48e-08 | 53 |
regional part of brain | 1.48e-08 | 53 |
foregut | 2.28e-08 | 87 |
neural tube | 5.34e-08 | 56 |
neural rod | 5.34e-08 | 56 |
future spinal cord | 5.34e-08 | 56 |
neural keel | 5.34e-08 | 56 |
organ system subdivision | 5.50e-08 | 223 |
cerebellum | 8.77e-08 | 6 |
rhombic lip | 8.77e-08 | 6 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 2.76e-11 | 106 |
melanoma | 8.23e-11 | 2 |
cell type cancer | 1.76e-09 | 143 |