FFCP PHASE1:Mm9::chr12:68323537..68323565,-: Difference between revisions
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{{FFCP|EntrezGene=320772|HGNC=|MCL_coexpression_id=1|UniProt=Q3UV20,P60755,B2RQF5|association_with_transcript=-1bp_to_NM_001193266,NM_207010,uc007nrl.2,uc007nrm.2,uc007nro.2,uc011ymi.1_5end|description=CAGE_peak_1_at_Mdga2_5end|id=chr12:68323537..68323565,-|ontology_enrichment_celltype=CL:0000221!6.34e-16!44;CL:0000133!6.34e-16!44;CL:0002319!8.68e-16!43;CL:0000540!4.29e-15!33;CL:0000047!4.29e-15!33;CL:0000031!4.29e-15!33;CL:0000404!4.29e-15!33;CL:0000117!2.72e-13!23;CL:0000337!2.72e-13!23;CL:0000055!6.90e-11!50;CL:0000393!2.72e-10!39;CL:0000211!2.72e-10!39|ontology_enrichment_celltype_v019_2=CL:0000117,3.51e-17,23;CL:0000337,3.51e-17,23;CL:0000540,7.17e-17,33;CL:0000047,7.17e-17,33;CL:0000031,7.17e-17,33;CL:0000404,7.17e-17,33;CL:0000221,2.97e-16,44;CL:0000133,2.97e-16,44;CL:0002319,4.72e-16,43;CL:0000393,1.28e-12,39;CL:0000211,1.28e-12,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!4.01e-35!75;UBERON:0001016!4.01e-35!75;UBERON:0001017!7.75e-35!73;UBERON:0005743!7.75e-35!73;UBERON:0004121!4.30e-34!102;UBERON:0000924!4.30e-34!102;UBERON:0006601!4.30e-34!102;UBERON:0002346!4.38e-31!71;UBERON:0003075!4.38e-31!71;UBERON:0007284!4.38e-31!71;UBERON:0000033!1.75e-27!63;UBERON:0001049!4.67e-26!52;UBERON:0005068!4.67e-26!52;UBERON:0006241!4.67e-26!52;UBERON:0007135!4.67e-26!52;UBERON:0000955!4.81e-25!50;UBERON:0006238!4.81e-25!50;UBERON:0002616!2.73e-24!49;UBERON:0003056!4.32e-24!49;UBERON:0002020!1.65e-20!34;UBERON:0003080!2.55e-20!40;UBERON:0002780!1.33e-19!39;UBERON:0001890!1.33e-19!39;UBERON:0006240!1.33e-19!39;UBERON:0002791!2.03e-17!29;UBERON:0003528!2.03e-17!29;UBERON:0001893!2.03e-17!29;UBERON:0000153!2.16e-14!94;UBERON:0007811!5.43e-14!86;UBERON:0000956!1.06e-12!21;UBERON:0001869!1.06e-12!21;UBERON:0000203!1.06e-12!21;UBERON:0002619!7.14e-11!17;UBERON:0002021!6.69e-09!10;UBERON:0000411!6.69e-09!10;UBERON:0001950!6.69e-09!10|ontology_enrichment_uberon_v019_2=UBERON:0001017,9.37e-40,73;UBERON:0001016,3.88e-39,75;UBERON:0002346,3.37e-38,64;UBERON:0003075,3.37e-38,64;UBERON:0007284,3.37e-38,64;UBERON:0004121,6.88e-37,95;UBERON:0000924,6.88e-37,95;UBERON:0006601,6.88e-37,95;UBERON:0000073,4.58e-34,54;UBERON:0010371,7.53e-33,73;UBERON:0001049,5.07e-32,52;UBERON:0005068,5.07e-32,52;UBERON:0006241,5.07e-32,52;UBERON:0007135,5.07e-32,52;UBERON:0003056,4.10e-28,49;UBERON:0000955,8.74e-28,47;UBERON:0006238,8.74e-28,47;UBERON:0002616,8.09e-27,46;UBERON:0002020,7.68e-26,34;UBERON:0003080,4.62e-24,40;UBERON:0010314,3.89e-23,92;UBERON:0002780,3.97e-23,39;UBERON:0001890,3.97e-23,39;UBERON:0006240,3.97e-23,39;UBERON:0003528,9.81e-22,29;UBERON:0002791,9.81e-22,29;UBERON:0001893,9.81e-22,29;UBERON:0000956,1.79e-15,21;UBERON:0001869,1.79e-15,21;UBERON:0000203,1.79e-15,21;UBERON:0002619,4.99e-13,17;UBERON:0002021,2.46e-11,10;UBERON:0000411,2.46e-11,10;UBERON:0001950,2.46e-11,10;UBERON:0003076,3.14e-08,12;UBERON:0003057,3.14e-08,12;UBERON:0002420,2.05e-07,8;UBERON:0007245,2.05e-07,8;UBERON:0010009,2.05e-07,8;UBERON:0010011,2.05e-07,8;UBERON:0000454,2.05e-07,8|phase1_expression=1.76163731815273,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.59233766815777,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.74420125104357,0.439372365468944,1.74986909166855,0.55994568650145,1.43752564364972,0,0,0,0,0,0,3.64169629547276,5.81890077199236,8.87363964908651,0.338844532069132,0,0,0,0.7104801149461,2.69640099466564,2.30530983192933,2.7996195323289,3.24014251996058,2.10324961351382,11.7116903605559,9.718215801871,2.08234358665422,2.30029130443767,3.67687514644008,28.6301290598411,22.472971502993,24.8842583875114,4.87979264601717,3.56801810049398,4.68822033501084,13.4007839520663,15.757353080887,25.8229038742809,17.6777151284201,17.2269733766915,8.01517617048792,0.908714319998209,1.13357340160178,0,0,0,0,0,0,0.421333260395256,0,0,0,1.12674735821344,0,0,0,0,0,0,0.34255163915718,0,1.7813056687779,0.173485326766136,0.913396434936424,0.691846491768175,0.150722640552623,1.29347577849275,0.125666591329675,0,0.289198713839823,0,0.161766849947409,0,0,0,9.07620470735796,12.9856958224342,0,0,0,0,27.7112682898922,32.0250421973039,4.64921102817598,31.462201954802,20.9686675010871,22.0255327233134,19.1444690419954,0.203678727700633,0,0,5.05060454127538,1.17108398666433,0.689706313300419,2.34080768746954,2.26057226753573,3.6739709541717,3.97152532883034,3.74806898238915,10.0894314588216,0,0.567318240503458,1.58356011747554,1.31517439456545,2.22437799380478,1.0447564995665,1.23469281844766,0.398068533636986,0,0,0,0.207125772535502,0.234526059981096,0.180062061461015,0,0,0,0.232533944750408,0,0.116765342367169,0,0,0,0.292399974850665,0.219550115291051,0.134206418760372,30.4920425417985,3.39585220851639,0,0,0.426576501070468,0.464473343720877,0.257734922644187,0.201683524623343,0,0.190225626112559,0.474529061544512,0.164698954724011,0,0,0.19496408711912,0,0.216138049874694,0.398282546508734,0.189667900953082,0.228497025219458,2.25415471346161,1.01825663922657,0.581857461502877,0.280543279561274,0.0632365371242573,0,0,0,0,0,0.196558995113203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189491411770485,0,0,0,0,0,0,0.157635144106191,0,0,0,0,0,0,0,0,0.551873492609465,20.3899249284496,16.4096361229084,0,0.252470927204373,1.57754109708128,3.12350995437311,3.01592756825919,0.955875191810208,1.55959071857676,0.849229592366497,0.404810701674894,2.33804686329049,1.18586333383957,28.276275845119,0.141940085208269,0,0.162886959353576,0,0,0.485561272309963,0,0,0,0,0,0,0,0.316036757935816,0,0,0.340439605753788,1.08036656418786,0.388076051348264,2.14337035031592,2.6601035046341,1.42695054081656,1.64549020602121,1.2178597964584,0,0,0.882113592219848,0.16488625294148,0.161464426695906,0.180938774784468,0,0,0.291480836629851,18.17167959703,0,0,0,0,0,0,0,0,0,0,1.10717597753397,0.406638934253697,0.540026704109006,0.209088296014469,0.436725127492355,0.269728692769641,0.165306911450672,0,0.129614973291793,0,0,0,0,0.583353565032143,0.516639293910924,0.337912250981556,0.117357238645754,0,0.734015410979976,0.241584120826006,0,0,0,0,0.25984164595559,0.179026695667481,0,0,0,0.100966449948148,0,0,0.0974578807397524,0.0962118416403295,0,0,0,0,0,0,0,0.183151624267265,0.643105137237198,1.50471631210609,46.3096510945995,44.6515479411962,36.6653128601214,51.0403951560752,40.4198686664679,40.7912704590438,31.0510350106631,35.1250538514892,37.610819945689,39.3497836931383,0.830298780673413,3.19219898720825,2.56100408631201,1.94485373654635,2.09613162627982,1.2869045591501,2.00022055021454,2.47242068686673,2.88827288632634,3.28506375292937,2.5347929989024,2.07488975524684,1.49826411951812,1.34452820050225,1.95280594449085,2.38146845641537,1.27472758539341,2.12200142510076,0.824171801606613,3.09117732282234,2.74295401908332,1.77475806159337,0.715308569841963,2.61623549938191,1.78807822789128,2.11536519729191,2.0122077016005,1.57841826862706,1.7654534799962,1.12228454331548,1.54225523561426,1.77308068276014,2.04615521584845,2.32405261778949,0.578719832943424,2.24829520144151,0.935726433781634,1.28922632428979,0.956441660344217,0.220591419119515,0.231867835620421|short_description=p1@Mdga2}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:320772 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q3UV20,uniprot:P60755,uniprot:B2RQF5 | |||
|association_with_transcript=-1bp_to_NM_001193266,NM_207010,uc007nrl.2,uc007nrm.2,uc007nro.2,uc011ymi.1_5end | |||
|cluster_id=chr12:68323537..68323565,- | |||
|description=CAGE_peak_1_at_Mdga2_5end | |||
|id=chr12:68323537..68323565,- | |||
|ontology_enrichment_celltype=CL:0000221!6.34e-16!44;CL:0000133!6.34e-16!44;CL:0002319!8.68e-16!43;CL:0000540!4.29e-15!33;CL:0000047!4.29e-15!33;CL:0000031!4.29e-15!33;CL:0000404!4.29e-15!33;CL:0000117!2.72e-13!23;CL:0000337!2.72e-13!23;CL:0000055!6.90e-11!50;CL:0000393!2.72e-10!39;CL:0000211!2.72e-10!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,3.51e-17,23;CL:0000337,3.51e-17,23;CL:0000540,7.17e-17,33;CL:0000047,7.17e-17,33;CL:0000031,7.17e-17,33;CL:0000404,7.17e-17,33;CL:0000221,2.97e-16,44;CL:0000133,2.97e-16,44;CL:0002319,4.72e-16,43;CL:0000393,1.28e-12,39;CL:0000211,1.28e-12,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!4.01e-35!75;UBERON:0001016!4.01e-35!75;UBERON:0001017!7.75e-35!73;UBERON:0005743!7.75e-35!73;UBERON:0004121!4.30e-34!102;UBERON:0000924!4.30e-34!102;UBERON:0006601!4.30e-34!102;UBERON:0002346!4.38e-31!71;UBERON:0003075!4.38e-31!71;UBERON:0007284!4.38e-31!71;UBERON:0000033!1.75e-27!63;UBERON:0001049!4.67e-26!52;UBERON:0005068!4.67e-26!52;UBERON:0006241!4.67e-26!52;UBERON:0007135!4.67e-26!52;UBERON:0000955!4.81e-25!50;UBERON:0006238!4.81e-25!50;UBERON:0002616!2.73e-24!49;UBERON:0003056!4.32e-24!49;UBERON:0002020!1.65e-20!34;UBERON:0003080!2.55e-20!40;UBERON:0002780!1.33e-19!39;UBERON:0001890!1.33e-19!39;UBERON:0006240!1.33e-19!39;UBERON:0002791!2.03e-17!29;UBERON:0003528!2.03e-17!29;UBERON:0001893!2.03e-17!29;UBERON:0000153!2.16e-14!94;UBERON:0007811!5.43e-14!86;UBERON:0000956!1.06e-12!21;UBERON:0001869!1.06e-12!21;UBERON:0000203!1.06e-12!21;UBERON:0002619!7.14e-11!17;UBERON:0002021!6.69e-09!10;UBERON:0000411!6.69e-09!10;UBERON:0001950!6.69e-09!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,9.37e-40,73;UBERON:0001016,3.88e-39,75;UBERON:0002346,3.37e-38,64;UBERON:0003075,3.37e-38,64;UBERON:0007284,3.37e-38,64;UBERON:0004121,6.88e-37,95;UBERON:0000924,6.88e-37,95;UBERON:0006601,6.88e-37,95;UBERON:0000073,4.58e-34,54;UBERON:0010371,7.53e-33,73;UBERON:0001049,5.07e-32,52;UBERON:0005068,5.07e-32,52;UBERON:0006241,5.07e-32,52;UBERON:0007135,5.07e-32,52;UBERON:0003056,4.10e-28,49;UBERON:0000955,8.74e-28,47;UBERON:0006238,8.74e-28,47;UBERON:0002616,8.09e-27,46;UBERON:0002020,7.68e-26,34;UBERON:0003080,4.62e-24,40;UBERON:0010314,3.89e-23,92;UBERON:0002780,3.97e-23,39;UBERON:0001890,3.97e-23,39;UBERON:0006240,3.97e-23,39;UBERON:0003528,9.81e-22,29;UBERON:0002791,9.81e-22,29;UBERON:0001893,9.81e-22,29;UBERON:0000956,1.79e-15,21;UBERON:0001869,1.79e-15,21;UBERON:0000203,1.79e-15,21;UBERON:0002619,4.99e-13,17;UBERON:0002021,2.46e-11,10;UBERON:0000411,2.46e-11,10;UBERON:0001950,2.46e-11,10;UBERON:0003076,3.14e-08,12;UBERON:0003057,3.14e-08,12;UBERON:0002420,2.05e-07,8;UBERON:0007245,2.05e-07,8;UBERON:0010009,2.05e-07,8;UBERON:0010011,2.05e-07,8;UBERON:0000454,2.05e-07,8 | |||
|phase1_expression=1.76163731815273,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.59233766815777,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.74420125104357,0.439372365468944,1.74986909166855,0.55994568650145,1.43752564364972,0,0,0,0,0,0,3.64169629547276,5.81890077199236,8.87363964908651,0.338844532069132,0,0,0,0.7104801149461,2.69640099466564,2.30530983192933,2.7996195323289,3.24014251996058,2.10324961351382,11.7116903605559,9.718215801871,2.08234358665422,2.30029130443767,3.67687514644008,28.6301290598411,22.472971502993,24.8842583875114,4.87979264601717,3.56801810049398,4.68822033501084,13.4007839520663,15.757353080887,25.8229038742809,17.6777151284201,17.2269733766915,8.01517617048792,0.908714319998209,1.13357340160178,0,0,0,0,0,0,0.421333260395256,0,0,0,1.12674735821344,0,0,0,0,0,0,0.34255163915718,0,1.7813056687779,0.173485326766136,0.913396434936424,0.691846491768175,0.150722640552623,1.29347577849275,0.125666591329675,0,0.289198713839823,0,0.161766849947409,0,0,0,9.07620470735796,12.9856958224342,0,0,0,0,27.7112682898922,32.0250421973039,4.64921102817598,31.462201954802,20.9686675010871,22.0255327233134,19.1444690419954,0.203678727700633,0,0,5.05060454127538,1.17108398666433,0.689706313300419,2.34080768746954,2.26057226753573,3.6739709541717,3.97152532883034,3.74806898238915,10.0894314588216,0,0.567318240503458,1.58356011747554,1.31517439456545,2.22437799380478,1.0447564995665,1.23469281844766,0.398068533636986,0,0,0,0.207125772535502,0.234526059981096,0.180062061461015,0,0,0,0.232533944750408,0,0.116765342367169,0,0,0,0.292399974850665,0.219550115291051,0.134206418760372,30.4920425417985,3.39585220851639,0,0,0.426576501070468,0.464473343720877,0.257734922644187,0.201683524623343,0,0.190225626112559,0.474529061544512,0.164698954724011,0,0,0.19496408711912,0,0.216138049874694,0.398282546508734,0.189667900953082,0.228497025219458,2.25415471346161,1.01825663922657,0.581857461502877,0.280543279561274,0.0632365371242573,0,0,0,0,0,0.196558995113203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189491411770485,0,0,0,0,0,0,0.157635144106191,0,0,0,0,0,0,0,0,0.551873492609465,20.3899249284496,16.4096361229084,0,0.252470927204373,1.57754109708128,3.12350995437311,3.01592756825919,0.955875191810208,1.55959071857676,0.849229592366497,0.404810701674894,2.33804686329049,1.18586333383957,28.276275845119,0.141940085208269,0,0.162886959353576,0,0,0.485561272309963,0,0,0,0,0,0,0,0.316036757935816,0,0,0.340439605753788,1.08036656418786,0.388076051348264,2.14337035031592,2.6601035046341,1.42695054081656,1.64549020602121,1.2178597964584,0,0,0.882113592219848,0.16488625294148,0.161464426695906,0.180938774784468,0,0,0.291480836629851,18.17167959703,0,0,0,0,0,0,0,0,0,0,1.10717597753397,0.406638934253697,0.540026704109006,0.209088296014469,0.436725127492355,0.269728692769641,0.165306911450672,0,0.129614973291793,0,0,0,0,0.583353565032143,0.516639293910924,0.337912250981556,0.117357238645754,0,0.734015410979976,0.241584120826006,0,0,0,0,0.25984164595559,0.179026695667481,0,0,0,0.100966449948148,0,0,0.0974578807397524,0.0962118416403295,0,0,0,0,0,0,0,0.183151624267265,0.643105137237198,1.50471631210609,46.3096510945995,44.6515479411962,36.6653128601214,51.0403951560752,40.4198686664679,40.7912704590438,31.0510350106631,35.1250538514892,37.610819945689,39.3497836931383,0.830298780673413,3.19219898720825,2.56100408631201,1.94485373654635,2.09613162627982,1.2869045591501,2.00022055021454,2.47242068686673,2.88827288632634,3.28506375292937,2.5347929989024,2.07488975524684,1.49826411951812,1.34452820050225,1.95280594449085,2.38146845641537,1.27472758539341,2.12200142510076,0.824171801606613,3.09117732282234,2.74295401908332,1.77475806159337,0.715308569841963,2.61623549938191,1.78807822789128,2.11536519729191,2.0122077016005,1.57841826862706,1.7654534799962,1.12228454331548,1.54225523561426,1.77308068276014,2.04615521584845,2.32405261778949,0.578719832943424,2.24829520144151,0.935726433781634,1.28922632428979,0.956441660344217,0.220591419119515,0.231867835620421 | |||
|short_description=p1@Mdga2 | |||
}} |
Revision as of 03:57, 5 August 2015
Short description: | p1@Mdga2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Mdga2_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | -1bp_to_NM_001193266, NM_207010, uc007nrl.2, uc007nrm.2, uc007nro.2, uc011ymi.1_5end |
EntrezGene: | 320772 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 3.51e-17 | 23 |
neuroblast (sensu Vertebrata) | 3.51e-17 | 23 |
neuron | 7.17e-17 | 33 |
neuronal stem cell | 7.17e-17 | 33 |
neuroblast | 7.17e-17 | 33 |
electrically signaling cell | 7.17e-17 | 33 |
ectodermal cell | 2.97e-16 | 44 |
neurectodermal cell | 2.97e-16 | 44 |
neural cell | 4.72e-16 | 43 |
electrically responsive cell | 1.28e-12 | 39 |
electrically active cell | 1.28e-12 | 39 |