FFCP PHASE1:Mm9::chr4:41587002..41587016,-: Difference between revisions
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{{FFCP|EntrezGene=69638|HGNC=|MCL_coexpression_id=747|UniProt=Q8C7D8,Q8K1D8|association_with_transcript=318bp_to_NM_027147,uc008sjd.2_5end|description=CAGE_peak_1_at_Enho_5end|id=chr4:41587002..41587016,-|ontology_enrichment_celltype=CL:0000221!2.76e-10!44;CL:0000133!2.76e-10!44;CL:0002319!7.45e-10!43;CL:0000540!1.14e-07!33;CL:0000047!1.14e-07!33;CL:0000031!1.14e-07!33;CL:0000404!1.14e-07!33;CL:0000055!1.61e-07!50;CL:0000117!5.31e-07!23;CL:0000337!5.31e-07!23|ontology_enrichment_celltype_v019_2=CL:0000221,3.19e-10,44;CL:0000133,3.19e-10,44;CL:0002319,8.89e-10,43;CL:0000540,1.28e-07,33;CL:0000047,1.28e-07,33;CL:0000031,1.28e-07,33;CL:0000404,1.28e-07,33;CL:0000117,7.08e-07,23;CL:0000337,7.08e-07,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!3.80e-22!73;UBERON:0005743!3.80e-22!73;UBERON:0000073!9.79e-21!75;UBERON:0001016!9.79e-21!75;UBERON:0001049!9.44e-16!52;UBERON:0005068!9.44e-16!52;UBERON:0006241!9.44e-16!52;UBERON:0007135!9.44e-16!52;UBERON:0004121!1.37e-15!102;UBERON:0000924!1.37e-15!102;UBERON:0006601!1.37e-15!102;UBERON:0000955!6.61e-15!50;UBERON:0006238!6.61e-15!50;UBERON:0002616!2.50e-14!49;UBERON:0000033!2.36e-13!63;UBERON:0002346!3.07e-12!71;UBERON:0003075!3.07e-12!71;UBERON:0007284!3.07e-12!71;UBERON:0002020!1.16e-11!34;UBERON:0004111!5.37e-10!122;UBERON:0003080!1.50e-09!40;UBERON:0002791!2.90e-09!29;UBERON:0003528!2.90e-09!29;UBERON:0001893!2.90e-09!29;UBERON:0000025!3.09e-09!114;UBERON:0002780!5.15e-09!39;UBERON:0001890!5.15e-09!39;UBERON:0006240!5.15e-09!39;UBERON:0003056!1.88e-08!49;UBERON:0003076!8.79e-08!12;UBERON:0003057!8.79e-08!12;UBERON:0002619!7.66e-07!17|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.02e-22,73;UBERON:0001016,4.18e-21,75;UBERON:0000073,3.37e-17,54;UBERON:0001049,5.08e-16,52;UBERON:0005068,5.08e-16,52;UBERON:0006241,5.08e-16,52;UBERON:0007135,5.08e-16,52;UBERON:0004121,6.33e-16,95;UBERON:0000924,6.33e-16,95;UBERON:0006601,6.33e-16,95;UBERON:0002346,9.40e-14,64;UBERON:0003075,9.40e-14,64;UBERON:0007284,9.40e-14,64;UBERON:0000955,2.42e-13,47;UBERON:0006238,2.42e-13,47;UBERON:0002616,9.21e-13,46;UBERON:0002020,1.02e-11,34;UBERON:0010371,1.24e-11,73;UBERON:0003080,1.41e-09,40;UBERON:0003528,3.16e-09,29;UBERON:0002791,3.16e-09,29;UBERON:0001893,3.16e-09,29;UBERON:0002780,5.05e-09,39;UBERON:0001890,5.05e-09,39;UBERON:0006240,5.05e-09,39;UBERON:0004111,1.61e-08,122;UBERON:0003056,2.24e-08,49;UBERON:0000025,4.16e-08,114;UBERON:0003076,4.26e-08,12;UBERON:0003057,4.26e-08,12;UBERON:0011216,4.10e-07,194;UBERON:0002619,4.13e-07,17|phase1_expression=10.5698239089164,0,0,0,0,0,0,0.129123323441576,0.140788722151667,0,0,0,0,0.0874204024189974,0,0.404950534779652,0,0,0,0,4.08207792725135,2.48227378002213,5.22399578277871,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.405507724878058,0.183546752161682,11.7358701652206,15.0437357902508,10.7646229539891,21.1928589990969,3.63964696225943,7.18762821824858,0,0,0,1.28629718017973,0.573066879877513,2.06268836910977,7.08107613008592,10.5798195854407,4.43681982454325,14.2314703469035,8.89294796111139,0.449949858640699,0,1.4209602298922,19.1744070731779,54.5589993556607,1.45165457231869,0.540023753326763,0.630974884054146,42.2763456917629,35.3389665522582,2.69479758272899,2.1086003624012,1.83843757322004,24.2254938198655,23.3667828695894,27.4955694528676,6.72620067423989,7.95942499340964,5.2091337055676,48.8570248252417,41.0816705323126,28.1148775909331,12.9636577608414,14.5219114415085,4.47358669980721,0.151452386666368,0.377857800533928,0.869593466105033,2.58127163094416,10.879541339324,48.5732872474035,2.59910566979068,0.896053774194671,7.16266542671934,0.170430322578058,0,0,12.9575946194546,1.28326477414318,0,0,0,0.253359865475099,0,4.11061966988616,0,1.03909497345377,1.73485326766136,2.74018930480927,2.53677046981664,0.60289056221049,0.587943535678524,1.25666591329675,3.21353458054686,0,0,2.10296904931632,0.441683036920787,2.90925151881133,5.59175283654366,15.2246014446005,16.7557365450764,1.02182822083437,0,0,0,29.8083372415597,18.7575247155637,4.77486538028885,14.6012428961512,14.3200656104985,33.2460871295296,26.6075671431123,2.13862664085664,2.23932547098167,1.26361379216837,0.420883711772948,1.56144531555244,3.67843367093557,3.06105620669094,1.9591626318643,1.42876648217788,2.43416068541215,1.96773621575431,1.29351685369508,1.5089759505299,0.945530400839096,0.175951124163949,2.41115305670332,0.278047249225598,1.39300866608867,1.23469281844766,1.79130840136644,0,0,0,0,0.234526059981096,0.36012412292203,0,0,0.462801338662135,0.232533944750408,0.536546802799238,0.583826711835847,0.658239399653922,0.32833492815819,0.0810688095458557,0.730999937126662,1.3173006917463,0.134206418760372,19.1363853193356,2.05809224758569,0.330418782983798,0.264450566663544,0.853153002140936,1.16118335930219,1.54640953586512,1.4117846723634,1.77902435075896,2.28270751335071,0.474529061544512,2.63518327558417,1.75934646160189,2.38747766449381,2.9244613067868,0.898819408654221,1.72910439899755,0.79656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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:69638 | |||
|HGNC= | |||
|MCL_coexpression_id=747 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q8C7D8,uniprot:Q8K1D8 | |||
|association_with_transcript=318bp_to_NM_027147,uc008sjd.2_5end | |||
|cluster_id=chr4:41587002..41587016,- | |||
|description=CAGE_peak_1_at_Enho_5end | |||
|id=chr4:41587002..41587016,- | |||
|ontology_enrichment_celltype=CL:0000221!2.76e-10!44;CL:0000133!2.76e-10!44;CL:0002319!7.45e-10!43;CL:0000540!1.14e-07!33;CL:0000047!1.14e-07!33;CL:0000031!1.14e-07!33;CL:0000404!1.14e-07!33;CL:0000055!1.61e-07!50;CL:0000117!5.31e-07!23;CL:0000337!5.31e-07!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,3.19e-10,44;CL:0000133,3.19e-10,44;CL:0002319,8.89e-10,43;CL:0000540,1.28e-07,33;CL:0000047,1.28e-07,33;CL:0000031,1.28e-07,33;CL:0000404,1.28e-07,33;CL:0000117,7.08e-07,23;CL:0000337,7.08e-07,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!3.80e-22!73;UBERON:0005743!3.80e-22!73;UBERON:0000073!9.79e-21!75;UBERON:0001016!9.79e-21!75;UBERON:0001049!9.44e-16!52;UBERON:0005068!9.44e-16!52;UBERON:0006241!9.44e-16!52;UBERON:0007135!9.44e-16!52;UBERON:0004121!1.37e-15!102;UBERON:0000924!1.37e-15!102;UBERON:0006601!1.37e-15!102;UBERON:0000955!6.61e-15!50;UBERON:0006238!6.61e-15!50;UBERON:0002616!2.50e-14!49;UBERON:0000033!2.36e-13!63;UBERON:0002346!3.07e-12!71;UBERON:0003075!3.07e-12!71;UBERON:0007284!3.07e-12!71;UBERON:0002020!1.16e-11!34;UBERON:0004111!5.37e-10!122;UBERON:0003080!1.50e-09!40;UBERON:0002791!2.90e-09!29;UBERON:0003528!2.90e-09!29;UBERON:0001893!2.90e-09!29;UBERON:0000025!3.09e-09!114;UBERON:0002780!5.15e-09!39;UBERON:0001890!5.15e-09!39;UBERON:0006240!5.15e-09!39;UBERON:0003056!1.88e-08!49;UBERON:0003076!8.79e-08!12;UBERON:0003057!8.79e-08!12;UBERON:0002619!7.66e-07!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.02e-22,73;UBERON:0001016,4.18e-21,75;UBERON:0000073,3.37e-17,54;UBERON:0001049,5.08e-16,52;UBERON:0005068,5.08e-16,52;UBERON:0006241,5.08e-16,52;UBERON:0007135,5.08e-16,52;UBERON:0004121,6.33e-16,95;UBERON:0000924,6.33e-16,95;UBERON:0006601,6.33e-16,95;UBERON:0002346,9.40e-14,64;UBERON:0003075,9.40e-14,64;UBERON:0007284,9.40e-14,64;UBERON:0000955,2.42e-13,47;UBERON:0006238,2.42e-13,47;UBERON:0002616,9.21e-13,46;UBERON:0002020,1.02e-11,34;UBERON:0010371,1.24e-11,73;UBERON:0003080,1.41e-09,40;UBERON:0003528,3.16e-09,29;UBERON:0002791,3.16e-09,29;UBERON:0001893,3.16e-09,29;UBERON:0002780,5.05e-09,39;UBERON:0001890,5.05e-09,39;UBERON:0006240,5.05e-09,39;UBERON:0004111,1.61e-08,122;UBERON:0003056,2.24e-08,49;UBERON:0000025,4.16e-08,114;UBERON:0003076,4.26e-08,12;UBERON:0003057,4.26e-08,12;UBERON:0011216,4.10e-07,194;UBERON:0002619,4.13e-07,17 | |||
|phase1_expression=10.5698239089164,0,0,0,0,0,0,0.129123323441576,0.140788722151667,0,0,0,0,0.0874204024189974,0,0.404950534779652,0,0,0,0,4.08207792725135,2.48227378002213,5.22399578277871,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.405507724878058,0.183546752161682,11.7358701652206,15.0437357902508,10.7646229539891,21.1928589990969,3.63964696225943,7.18762821824858,0,0,0,1.28629718017973,0.573066879877513,2.06268836910977,7.08107613008592,10.5798195854407,4.43681982454325,14.2314703469035,8.89294796111139,0.449949858640699,0,1.4209602298922,19.1744070731779,54.5589993556607,1.45165457231869,0.540023753326763,0.630974884054146,42.2763456917629,35.3389665522582,2.69479758272899,2.1086003624012,1.83843757322004,24.2254938198655,23.3667828695894,27.4955694528676,6.72620067423989,7.95942499340964,5.2091337055676,48.8570248252417,41.0816705323126,28.1148775909331,12.9636577608414,14.5219114415085,4.47358669980721,0.151452386666368,0.377857800533928,0.869593466105033,2.58127163094416,10.879541339324,48.5732872474035,2.59910566979068,0.896053774194671,7.16266542671934,0.170430322578058,0,0,12.9575946194546,1.28326477414318,0,0,0,0.253359865475099,0,4.11061966988616,0,1.03909497345377,1.73485326766136,2.74018930480927,2.53677046981664,0.60289056221049,0.587943535678524,1.25666591329675,3.21353458054686,0,0,2.10296904931632,0.441683036920787,2.90925151881133,5.59175283654366,15.2246014446005,16.7557365450764,1.02182822083437,0,0,0,29.8083372415597,18.7575247155637,4.77486538028885,14.6012428961512,14.3200656104985,33.2460871295296,26.6075671431123,2.13862664085664,2.23932547098167,1.26361379216837,0.420883711772948,1.56144531555244,3.67843367093557,3.06105620669094,1.9591626318643,1.42876648217788,2.43416068541215,1.96773621575431,1.29351685369508,1.5089759505299,0.945530400839096,0.175951124163949,2.41115305670332,0.278047249225598,1.39300866608867,1.23469281844766,1.79130840136644,0,0,0,0,0.234526059981096,0.36012412292203,0,0,0.462801338662135,0.232533944750408,0.536546802799238,0.583826711835847,0.658239399653922,0.32833492815819,0.0810688095458557,0.730999937126662,1.3173006917463,0.134206418760372,19.1363853193356,2.05809224758569,0.330418782983798,0.264450566663544,0.853153002140936,1.16118335930219,1.54640953586512,1.4117846723634,1.77902435075896,2.28270751335071,0.474529061544512,2.63518327558417,1.75934646160189,2.38747766449381,2.9244613067868,0.898819408654221,1.72910439899755,0.796565093017469,3.60369011810855,2.74196430263349,2.25415471346161,2.8511185898344,2.71533482034676,2.24434623649019,3.16182685621286,1.47610147979602,2.04098346193787,1.97435462274881,5.63259991465583,0.166845105716094,0,0.449724224769707,1.01430060694251,1.92941727801933,3.8193877767213,1.72617682470486,8.2688965655268,10.4333337011471,8.62609239164127,12.6527922207291,29.0195035996541,31.3197808654419,8.7904732625737,41.0076993158862,3.69506380333209,1.89491411770485,0.814824882210129,0.678980343100753,0.938760993154008,1.17254380209271,1.90434912708811,5.26860849216057,3.15270288212382,4.65075848262427,3.34855014180723,3.93271955317771,3.9717545829156,4.62876987460837,0,0,1.47529281905711,1.65562047782839,46.8807722764353,35.5151410374376,0,1.76729649043061,1.89304931649754,1.56175497718655,1.50796378412959,3.58453196928828,3.34198011123591,2.26461224631066,3.64329631507405,7.3063964477828,4.74345333535828,23.4564560987919,0.851640511249612,1.6025904330053,1.95464351224291,2.63952196756057,1.32745138339963,0.728341908464944,1.81394134178851,2.07465587731488,2.36241514304618,1.84461088766356,2.06742634534577,2.18120237686503,1.42598951353889,0.948110273807448,0,0,2.04263763452273,1.08036656418786,1.03486947026204,2.14337035031592,1.59606210278046,2.67553226403106,1.97458824722545,2.74018454203139,7.97883807416615,16.7347335982418,4.6310963591542,0.98931751764888,0.322928853391811,0.241251699712623,0.835606408021955,1.14898629821543,0.582961673259701,44.8729230865433,0.854354403989263,0.82554747185289,0.555583582109135,0,0.136694227721025,0.457556346413045,0.339956859987711,0.139951452323658,0,4.77335309007557,0.158167996790568,3.86306987541013,5.18425635944646,4.59994251231831,8.29777742235475,9.84509728609191,10.579642332843,11.5172614472973,3.11075935900303,0.621339313086926,0.56369293868419,1.49516546043979,1.98550188548517,0.972255941720238,1.80823752868824,1.35164900392623,0.58678619322877,1.3020438484395,0.104859344425711,0,0,0.316011120628178,3.44632865993279,3.59488350076895,2.5984164595559,1.25318686967237,1.19208812868759,0.360586348559907,0.295379054349154,0.504832249740738,0.457240839929999,0.100826185136841,0.194915761479505,0.192423683280659,0.233753804363138,0.453460767230423,4.21773311410723,7.80510552502439,3.69346156000973,33.4217997675689,0.93841237725591,0.73260649706906,0.643105137237198,2.50786052017682,11.2950368523413,14.7304075682297,12.0308057822273,8.76451229952807,15.0718154349541,19.6402413321322,18.2256075062588,15.3109209096235,15.406841905463,19.1571315348173,2.69847103718859,1.99512436700516,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| |||
|short_description=p1@Enho | |||
}} |
Revision as of 11:10, 5 August 2015
Short description: | p1@Enho |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Enho_5end |
Coexpression cluster: | MCL_coexpression_mm9:747 |
Association with transcript: | 318bp_to_NM_027147, uc008sjd.2_5end |
EntrezGene: | 69638 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 3.19e-10 | 44 |
neurectodermal cell | 3.19e-10 | 44 |
neural cell | 8.89e-10 | 43 |
neuron | 1.28e-07 | 33 |
neuronal stem cell | 1.28e-07 | 33 |
neuroblast | 1.28e-07 | 33 |
electrically signaling cell | 1.28e-07 | 33 |
CNS neuron (sensu Vertebrata) | 7.08e-07 | 23 |
neuroblast (sensu Vertebrata) | 7.08e-07 | 23 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 1.02e-22 | 73 |
nervous system | 4.18e-21 | 75 |
regional part of nervous system | 3.37e-17 | 54 |
neural tube | 5.08e-16 | 52 |
neural rod | 5.08e-16 | 52 |
future spinal cord | 5.08e-16 | 52 |
neural keel | 5.08e-16 | 52 |
ectoderm-derived structure | 6.33e-16 | 95 |
ectoderm | 6.33e-16 | 95 |
presumptive ectoderm | 6.33e-16 | 95 |
neurectoderm | 9.40e-14 | 64 |
neural plate | 9.40e-14 | 64 |
presumptive neural plate | 9.40e-14 | 64 |
brain | 2.42e-13 | 47 |
future brain | 2.42e-13 | 47 |
regional part of brain | 9.21e-13 | 46 |
gray matter | 1.02e-11 | 34 |
ecto-epithelium | 1.24e-11 | 73 |
anterior neural tube | 1.41e-09 | 40 |
brain grey matter | 3.16e-09 | 29 |
regional part of telencephalon | 3.16e-09 | 29 |
telencephalon | 3.16e-09 | 29 |
regional part of forebrain | 5.05e-09 | 39 |
forebrain | 5.05e-09 | 39 |
future forebrain | 5.05e-09 | 39 |
anatomical conduit | 1.61e-08 | 122 |
pre-chordal neural plate | 2.24e-08 | 49 |
tube | 4.16e-08 | 114 |
posterior neural tube | 4.26e-08 | 12 |
chordal neural plate | 4.26e-08 | 12 |
organ system subdivision | 4.10e-07 | 194 |
regional part of cerebral cortex | 4.13e-07 | 17 |