FFCP PHASE1:Mm9::chr3:48758645..48758646,+: Difference between revisions
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|id=chr3:48758645..48758646,+
|short_description=p1@ENSMUST00000083084
|description=CAGE_peak_1_at_ENSMUST00000083084_5end
|association_with_transcript=1bp_to_ENSMU...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene= | |EntrezGene= | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=370 | |||
|TSSclassifier=NA | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=1bp_to_ENSMUST00000083084_5end | |||
|cluster_id=chr3:48758645..48758646,+ | |||
|description=CAGE_peak_1_at_ENSMUST00000083084_5end | |||
|id=chr3:48758645..48758646,+ | |||
|ontology_enrichment_celltype=CL:0000548!1.94e-29!115;CL:0000004!1.94e-29!115;CL:0000255!1.94e-29!115;CL:0000723!1.07e-28!91;CL:0000048!1.07e-28!91;CL:0002371!3.26e-28!118;CL:0000034!3.78e-28!97;CL:0000144!4.76e-27!121;CL:0000012!4.76e-27!121;CL:0002321!5.02e-23!70;CL:0000220!5.02e-23!70;CL:0000055!2.40e-20!50;CL:0000393!2.03e-18!39;CL:0000211!2.03e-18!39;CL:0002319!8.05e-16!43;CL:0000221!2.95e-15!44;CL:0000133!2.95e-15!44;CL:0000540!8.20e-15!33;CL:0000047!8.20e-15!33;CL:0000031!8.20e-15!33;CL:0000404!8.20e-15!33;CL:0000117!6.42e-13!23;CL:0000337!6.42e-13!23;CL:0000219!1.24e-10!54;CL:0002320!1.85e-10!46;CL:0000134!1.85e-10!46;CL:0000063!2.97e-09!66;CL:0000839!2.05e-07!13;CL:0000049!3.08e-07!19;CL:0002609!3.14e-07!6;CL:0000414!3.65e-07!11;CL:0000181!8.99e-07!5;CL:0000417!8.99e-07!5;CL:0000668!8.99e-07!5;CL:0000412!8.99e-07!5;CL:0000182!8.99e-07!5 | |||
|ontology_enrichment_celltype_v019_2=CL:0002613,2.12e-12,3;CL:0002494,1.12e-11,3;CL:0000737,1.12e-11,3;CL:0000746,1.12e-11,3;CL:0000513,1.12e-11,3;CL:0002321,2.79e-08,70;CL:0000393,2.84e-08,39;CL:0000211,2.84e-08,39;CL:0000117,1.46e-07,23;CL:0000337,1.46e-07,23;CL:0000723,4.54e-07,91;CL:0000048,4.54e-07,91 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002020!2.37e-17!34;UBERON:0002791!3.12e-15!29;UBERON:0003528!3.12e-15!29;UBERON:0001893!3.12e-15!29;UBERON:0000956!1.62e-14!21;UBERON:0001869!1.62e-14!21;UBERON:0000203!1.62e-14!21;UBERON:0001017!2.13e-14!73;UBERON:0005743!2.13e-14!73;UBERON:0000073!1.05e-13!75;UBERON:0001016!1.05e-13!75;UBERON:0002619!9.94e-13!17;UBERON:0002384!1.85e-10!46;UBERON:0002021!4.00e-10!10;UBERON:0000411!4.00e-10!10;UBERON:0001950!4.00e-10!10;UBERON:0002780!1.33e-09!39;UBERON:0001890!1.33e-09!39;UBERON:0006240!1.33e-09!39;UBERON:0003080!3.35e-09!40;UBERON:0001049!1.18e-08!52;UBERON:0005068!1.18e-08!52;UBERON:0006241!1.18e-08!52;UBERON:0007135!1.18e-08!52;UBERON:0002616!5.70e-08!49;UBERON:0002371!9.02e-08!16;UBERON:0000955!1.11e-07!50;UBERON:0006238!1.11e-07!50;UBERON:0004121!3.14e-07!102;UBERON:0000924!3.14e-07!102;UBERON:0006601!3.14e-07!102 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003528,1.68e-17,29;UBERON:0002791,1.68e-17,29;UBERON:0001893,1.68e-17,29;UBERON:0002020,1.28e-14,34;UBERON:0000956,6.93e-14,21;UBERON:0001869,6.93e-14,21;UBERON:0000203,6.93e-14,21;UBERON:0002619,9.95e-14,17;UBERON:0002021,1.42e-13,10;UBERON:0000411,1.42e-13,10;UBERON:0001950,1.42e-13,10;UBERON:0002780,1.79e-12,39;UBERON:0001890,1.79e-12,39;UBERON:0006240,1.79e-12,39;UBERON:0003080,4.15e-12,40;UBERON:0002616,2.97e-10,46;UBERON:0000955,5.45e-10,47;UBERON:0006238,5.45e-10,47;UBERON:0003056,1.70e-09,49;UBERON:0001049,7.94e-09,52;UBERON:0005068,7.94e-09,52;UBERON:0006241,7.94e-09,52;UBERON:0007135,7.94e-09,52;UBERON:0000073,2.02e-08,54;UBERON:0001017,5.52e-08,73;UBERON:0001016,1.05e-07,75;UBERON:0000369,1.26e-07,5;UBERON:0002435,1.26e-07,5;UBERON:0000204,1.26e-07,5;UBERON:0010082,1.26e-07,5;UBERON:0000025,7.34e-07,114;UBERON:0010314,7.93e-07,92;UBERON:0002346,8.90e-07,64;UBERON:0003075,8.90e-07,64;UBERON:0007284,8.90e-07,64 | |||
|phase1_expression=0,0,0,0,0,0,0.233612640595526,0.387369970324729,0,0,0,0,0.342401459862411,0,0,0,0.699561878128147,0.157731082679119,0.137114433605739,0.42438965179803,0,0,0,0,0,0,0,0,0,0,0,5.71527606113668,3.07532393792285,0,0,0.166234645358492,0.204169356262369,0,0,0,0,0,0,0.251793635951155,0.202753862439029,0,0,0,0.439372365468944,1.36100929351998,0.419959264876088,0,0,0,0,1.02903774414379,1.14613375975503,1.03134418455488,1.01158230429799,0,1.26766280701236,0,0.889294796111139,0.899899717281399,0.988866362566974,0.7104801149461,0.599200221036809,0.768436610643109,0.622137673850866,1.62007125998029,0.420649922702764,0.285650984403804,0.220868540951614,0.489963196859816,0.766763768145891,1.83843757322004,0,0.638436690425939,0.307213066512487,1.05509030184155,1.55528994124096,1.56274011167028,0,0,0.45839474333043,0.294628585473668,0.711858403995515,0,0,0,0.869593466105033,0.860423876981386,0.679971333707751,1.07940638327563,1.94932925234301,0.896053774194671,0,0,0.259786004602869,0,0,0,0,0,0.432982082022428,1.01343946190039,0.505524445014783,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.359445373517761,0,0.127070227073065,0,0,0,0,0,0,0,0,0.124406970610093,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.278047249225598,0,0,0,0,0,0.284163499395593,0,0,0,0,0.196764231747404,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184753190166605,0,0,0,0,0,0,0,0,0,0,0,0,0,3.01582567878545,0.54390568381871,0,0,0,0,0,0,0.315508219416257,0.780877488593277,0.861693590931196,0.238968797952552,0.668396022247182,0,0,0,0.790575555893047,0,0.141940085208269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129920822977795,0,0,0,0,0,0,0,0,0,0,0,0,0.269141569828427,0.167884616364078,0,0,0,0,0,1.12950368523413,0.920650473014354,1.14579102687879,1.03111909406213,1.37016503954128,1.5107877947794,0.675022500231806,0.900642406448441,2.71885445390523,0,0,0,0.170733605754134,0,0,0,0,0,0,0,0,0,0.0936415074698824,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0.233612640595526,0.387369970324729,0,0,0,0,0.342401459862411,0,0,0,0.699561878128147,0.157731082679119,0.137114433605739,0.42438965179803,0,0,0,0,0,0,0,0,0,0,0,5.71527606113668,3.07532393792285,0,0,0.166234645358492,0.204169356262369,0,0,0,0,0,0,0.251793635951155,0.202753862439029,0,0,0,0.439372365468944,1.36100929351998,0.419959264876088,0,0,0,0,1.02903774414379,1.14613375975503,1.03134418455488,1.01158230429799,0,1.26766280701236,0,0.889294796111139,0.899899717281399,0.988866362566974,0.7104801149461,0.599200221036809,0.768436610643109,0.622137673850866,1.62007125998029,0.420649922702764,0.285650984403804,0.220868540951614,0.489963196859816,0.766763768145891,1.83843757322004,0,0.638436690425939,0.307213066512487,1.05509030184155,1.55528994124096,1.56274011167028,0,0,0.45839474333043,0.294628585473668,0.711858403995515,0,0,0,0.869593466105033,0.860423876981386,0.679971333707751,1.07940638327563,1.94932925234301,0.896053774194671,0,0,0.259786004602869,0,0,0,0,0,0.432982082022428,1.01343946190039,0.505524445014783,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.359445373517761,0,0.127070227073065,0,0,0,0,0,0,0,0,0.124406970610093,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.278047249225598,0,0,0,0,0,0.284163499395593,0,0,0,0,0.196764231747404,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184753190166605,0,0,0,0,0,0,0,0,0,0,0,0,0,3.01582567878545,0.54390568381871,0,0,0,0,0,0,0.315508219416257,0.780877488593277,0.861693590931196,0.238968797952552,0.668396022247182,0,0,0,0.790575555893047,0,0.141940085208269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129920822977795,0,0,0,0,0,0,0,0,0,0,0,0,0.269141569828427,0.167884616364078,0,0,0,0,0,1.12950368523413,0.920650473014354,1.14579102687879,1.03111909406213,1.37016503954128,1.5107877947794,0.675022500231806,0.900642406448441,2.71885445390523,0,0,0,0.170733605754134,0,0,0,0,0,0,0,0,0,0.0936415074698824,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p1@ENSMUST00000083084 | |||
}} | }} |
Latest revision as of 10:39, 6 August 2015
Short description: | p1@ENSMUST00000083084 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_ENSMUST00000083084_5end |
Coexpression cluster: | MCL_coexpression_mm9:370 |
Association with transcript: | 1bp_to_ENSMUST00000083084_5end |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
striatum neuron | 2.12e-12 | 3 |
cardiocyte | 1.12e-11 | 3 |
striated muscle cell | 1.12e-11 | 3 |
cardiac muscle cell | 1.12e-11 | 3 |
cardiac muscle myoblast | 1.12e-11 | 3 |
embryonic cell | 2.79e-08 | 70 |
electrically responsive cell | 2.84e-08 | 39 |
electrically active cell | 2.84e-08 | 39 |
CNS neuron (sensu Vertebrata) | 1.46e-07 | 23 |
neuroblast (sensu Vertebrata) | 1.46e-07 | 23 |
somatic stem cell | 4.54e-07 | 91 |
multi fate stem cell | 4.54e-07 | 91 |
Ontology term | p-value | n |
---|---|---|
brain grey matter | 1.68e-17 | 29 |
regional part of telencephalon | 1.68e-17 | 29 |
telencephalon | 1.68e-17 | 29 |
gray matter | 1.28e-14 | 34 |
cerebral cortex | 6.93e-14 | 21 |
cerebral hemisphere | 6.93e-14 | 21 |
pallium | 6.93e-14 | 21 |
regional part of cerebral cortex | 9.95e-14 | 17 |
occipital lobe | 1.42e-13 | 10 |
visual cortex | 1.42e-13 | 10 |
neocortex | 1.42e-13 | 10 |
regional part of forebrain | 1.79e-12 | 39 |
forebrain | 1.79e-12 | 39 |
future forebrain | 1.79e-12 | 39 |
anterior neural tube | 4.15e-12 | 40 |
regional part of brain | 2.97e-10 | 46 |
brain | 5.45e-10 | 47 |
future brain | 5.45e-10 | 47 |
pre-chordal neural plate | 1.70e-09 | 49 |
neural tube | 7.94e-09 | 52 |
neural rod | 7.94e-09 | 52 |
future spinal cord | 7.94e-09 | 52 |
neural keel | 7.94e-09 | 52 |
regional part of nervous system | 2.02e-08 | 54 |
central nervous system | 5.52e-08 | 73 |
nervous system | 1.05e-07 | 75 |
corpus striatum | 1.26e-07 | 5 |
striatum | 1.26e-07 | 5 |
ventral part of telencephalon | 1.26e-07 | 5 |
future corpus striatum | 1.26e-07 | 5 |
tube | 7.34e-07 | 114 |
structure with developmental contribution from neural crest | 7.93e-07 | 92 |
neurectoderm | 8.90e-07 | 64 |
neural plate | 8.90e-07 | 64 |
presumptive neural plate | 8.90e-07 | 64 |