FFCP PHASE1:Hg19::chr20:36766747..36766778,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr20:36766747..36766778,-
|short_description=p3@TGM2
|description=CAGE_peak_3_at_TGM2_5end
|association_with_transcript=-217bp_to_AF311286_5end
|EntrezGene=70...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=7052 | |EntrezGene=7052 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC=11778 | |HGNC=11778 | ||
|TSSclassifier=strong | |||
|UniProt=Q9BXQ0 | |UniProt=Q9BXQ0 | ||
|association_with_transcript=-217bp_to_AF311286_5end | |||
|cluster_id=chr20:36766747..36766778,- | |||
|coexpression_cluster_id=C454 | |||
|description=CAGE_peak_3_at_TGM2_5end | |||
|id=chr20:36766747..36766778,- | |||
|ontology_enrichment_celltype=CL:0000222!1.58e-17!119;CL:0000192!5.75e-16!42;CL:0000514!5.75e-16!42;CL:0000359!3.79e-15!32;CL:0000183!3.88e-12!59;CL:0000187!1.03e-11!54;CL:0002139!1.17e-11!24;CL:0000115!2.27e-11!35;CL:0000680!3.24e-11!57;CL:0000056!3.24e-11!57;CL:0000355!3.24e-11!57;CL:0002078!7.98e-11!44;CL:0000393!6.66e-09!60;CL:0000211!6.66e-09!60;CL:0000071!7.52e-09!18;CL:0002546!7.52e-09!18;CL:0000220!4.39e-08!246;CL:0002321!9.58e-08!248;CL:0000213!4.00e-07!57;CL:0000215!4.00e-07!57 | |||
|ontology_enrichment_celltype_v019=CL:0000359;4.82e-21;32!CL:0002139;2.42e-16;24!CL:0000192;1.15e-15;43!CL:0000115;2.02e-14;36!CL:0000071;2.70e-11;18!CL:0002078;6.25e-11;45!CL:0000349;2.84e-10;19!CL:0002539;1.56e-09;10!CL:0000187;7.07e-08;55!CL:0002138;8.77e-07;6!CL:0000393;9.43e-07;61!CL:0000211;9.43e-07;61 | |||
|ontology_enrichment_celltype_v019_2=CL:0000222,3.81e-22,121;CL:0000359,4.74e-22,32;CL:0000192,8.63e-21,43;CL:0000514,8.63e-21,43;CL:0000115,3.32e-17,36;CL:0002139,3.34e-16,24;CL:0000187,2.87e-15,55;CL:0002078,1.60e-14,45;CL:0000680,5.82e-14,58;CL:0000056,5.82e-14,58;CL:0000355,5.82e-14,58;CL:0000393,8.58e-13,61;CL:0000211,8.58e-13,61;CL:0000071,2.22e-11,18;CL:0002546,2.22e-11,18;CL:0000349,2.10e-10,19;CL:0002321,2.79e-10,250;CL:0000213,1.83e-09,58;CL:0000215,1.83e-09,58;CL:0002539,1.98e-09,10 | |||
|ontology_enrichment_development_v019=CL:0000514;1.15e-15;43!CL:0002546;2.70e-11;18!CL:0000355;7.35e-07;58!CL:0005022;8.77e-07;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002049!1.58e-30!79;UBERON:0007798!1.58e-30!79;UBERON:0000055!1.78e-27!69;UBERON:0003914!2.77e-27!118;UBERON:0001981!1.11e-25!60;UBERON:0007500!1.11e-25!60;UBERON:0004537!1.11e-25!60;UBERON:0006965!1.11e-25!60;UBERON:0004872!1.55e-25!84;UBERON:0001009!2.02e-22!113;UBERON:0004535!3.95e-21!110;UBERON:0000490!1.24e-19!138;UBERON:0000477!3.24e-18!286;UBERON:0001637!7.36e-18!42;UBERON:0003509!7.36e-18!42;UBERON:0004572!7.36e-18!42;UBERON:0000119!2.44e-16!312;UBERON:0004111!8.10e-16!241;UBERON:0000483!1.45e-15!309;UBERON:0000468!1.66e-15!659;UBERON:0005256!5.13e-14!143;UBERON:0000025!1.50e-13!194;UBERON:0000467!3.03e-13!625;UBERON:0004573!3.84e-13!33;UBERON:0004571!3.84e-13!33;UBERON:0000480!4.56e-13!626;UBERON:0000926!2.42e-12!448;UBERON:0004120!2.42e-12!448;UBERON:0006603!2.42e-12!448;UBERON:0002385!3.24e-11!63;UBERON:0001015!3.24e-11!63;UBERON:0000383!3.24e-11!63;UBERON:0002100!5.01e-11!216;UBERON:0001134!7.94e-11!61;UBERON:0002036!7.94e-11!61;UBERON:0003082!7.94e-11!61;UBERON:0000481!9.40e-11!347;UBERON:0002050!4.71e-10!605;UBERON:0005423!4.71e-10!605;UBERON:0003104!8.09e-10!238;UBERON:0009142!8.09e-10!238;UBERON:0000923!9.06e-10!604;UBERON:0005291!9.06e-10!604;UBERON:0006598!9.06e-10!604;UBERON:0002532!9.06e-10!604;UBERON:0000922!2.43e-09!612;UBERON:0005631!2.97e-09!14;UBERON:0000158!2.97e-09!14;UBERON:0003081!5.20e-09!216;UBERON:0000486!6.42e-09!82;UBERON:0001986!7.52e-09!18;UBERON:0004638!7.52e-09!18;UBERON:0004852!7.52e-09!18;UBERON:0004290!1.73e-08!70;UBERON:0000914!2.82e-08!83;UBERON:0002329!2.82e-08!83;UBERON:0003077!2.82e-08!83;UBERON:0003059!2.82e-08!83;UBERON:0007282!2.82e-08!83;UBERON:0009618!2.82e-08!83;UBERON:0007285!2.82e-08!83;UBERON:0000947!5.96e-08!21;UBERON:0010191!5.96e-08!21;UBERON:0000487!1.13e-07!22;UBERON:0006914!2.23e-07!25;UBERON:0003103!5.54e-07!69;UBERON:0001135!5.97e-07!15;UBERON:0000478!6.85e-07!24 | |||
|ontology_enrichment_uberon_v019=UBERON:0001637;1.58e-18;42!UBERON:0003509;1.58e-18;42!UBERON:0004572;1.58e-18;42!UBERON:0007500;2.03e-18;56!UBERON:0001981;2.03e-18;56!UBERON:0004537;2.03e-18;56!UBERON:0000055;1.89e-17;65!UBERON:0004573;2.48e-17;33!UBERON:0004571;2.48e-17;33!UBERON:0002049;5.66e-17;75!UBERON:0007798;5.66e-17;75!UBERON:0003914;4.36e-15;74!UBERON:0000947;2.18e-11;21!UBERON:0010191;2.18e-11;21!UBERON:0004638;2.70e-11;18!UBERON:0001986;2.70e-11;18!UBERON:0004852;2.70e-11;18!UBERON:0001009;2.49e-10;112!UBERON:0001135;7.76e-10;15!UBERON:0000487;9.37e-10;22!UBERON:0004237;1.56e-09;10!UBERON:0004695;1.56e-09;10!UBERON:0002111;1.56e-09;10!UBERON:0004178;1.56e-09;10!UBERON:0006914;3.27e-09;25!UBERON:0000478;1.41e-08;24!UBERON:0000025;6.01e-08;93!UBERON:0004535;2.18e-07;109!UBERON:0003513;3.29e-07;7!UBERON:0000490;3.97e-07;33!UBERON:0005631;9.44e-07;10!UBERON:0000158;9.44e-07;10 | |||
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| ||
|short_description=p3@TGM2 | |||
}} | }} |
Latest revision as of 02:57, 16 September 2015
Short description: | p3@TGM2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_TGM2_5end |
Coexpression cluster: | C454_Placental_Amniotic_Smooth_Mesenchymal_Lens_Renal_bile |
Association with transcript: | -217bp_to_AF311286_5end |
EntrezGene: | TGM2 |
HGNC: | 11778 |
UniProt: | Q9BXQ0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 3.81e-22 | 121 |
vascular associated smooth muscle cell | 4.74e-22 | 32 |
smooth muscle cell | 8.63e-21 | 43 |
smooth muscle myoblast | 8.63e-21 | 43 |
endothelial cell | 3.32e-17 | 36 |
endothelial cell of vascular tree | 3.34e-16 | 24 |
muscle cell | 2.87e-15 | 55 |
meso-epithelial cell | 1.60e-14 | 45 |
muscle precursor cell | 5.82e-14 | 58 |
myoblast | 5.82e-14 | 58 |
multi-potent skeletal muscle stem cell | 5.82e-14 | 58 |
electrically responsive cell | 8.58e-13 | 61 |
electrically active cell | 8.58e-13 | 61 |
blood vessel endothelial cell | 2.22e-11 | 18 |
embryonic blood vessel endothelial progenitor cell | 2.22e-11 | 18 |
extraembryonic cell | 2.10e-10 | 19 |
embryonic cell | 2.79e-10 | 250 |
lining cell | 1.83e-09 | 58 |
barrier cell | 1.83e-09 | 58 |
aortic smooth muscle cell | 1.98e-09 | 10 |