FFCP PHASE1:Hg19::chr9:134585127..134585165,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=2889 | |EntrezGene=2889 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4568 | |HGNC=4568 | ||
|TSSclassifier=strong | |||
|UniProt=F5H4P5,E9PDT1,F5H704,C9JL20,Q5JUE5,E7ETL5,Q13905 | |UniProt=F5H4P5,E9PDT1,F5H704,C9JL20,Q5JUE5,E7ETL5,Q13905 | ||
|association_with_transcript=63bp_to_ENST00000337036,ENST00000372190,ENST00000372191,ENST00000398415,ENST00000411834,ENST00000427994,ENST00000437236,NM_198679,uc004cbb.2_5end | |association_with_transcript=63bp_to_ENST00000337036,ENST00000372190,ENST00000372191,ENST00000398415,ENST00000411834,ENST00000427994,ENST00000437236,NM_198679,uc004cbb.2_5end | ||
|cluster_id=chr9:134585127..134585165,- | |||
|coexpression_cluster_id=C159 | |coexpression_cluster_id=C159 | ||
|description=CAGE_peak_7_at_RAPGEF1_5end | |description=CAGE_peak_7_at_RAPGEF1_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0000039!8.48e-10!7;CL:0000586!8.48e-10!7 | |ontology_enrichment_celltype=CL:0000039!8.48e-10!7;CL:0000586!8.48e-10!7 | ||
|ontology_enrichment_celltype_v019=CL:0002541;6.19e-13;3!CL:0000039;2.75e-12;7!CL:0000586;2.75e-12;7 | |ontology_enrichment_celltype_v019=CL:0002541;6.19e-13;3!CL:0000039;2.75e-12;7!CL:0000586;2.75e-12;7 | ||
|ontology_enrichment_celltype_v019_2=CL:0002541,5.51e-13,3;CL:0000039,2.75e-12,7;CL:0000586,2.75e-12,7 | |||
|ontology_enrichment_development_v019=UBERON:0010227;2.47e-10;1!UBERON:0003124;6.05e-10;1!UBERON:0010115;6.05e-10;1!UBERON:0004140;6.05e-10;1!UBERON:0005425;6.05e-10;1!UBERON:0005062;1.52e-09;4!UBERON:0007284;1.52e-09;4 | |ontology_enrichment_development_v019=UBERON:0010227;2.47e-10;1!UBERON:0003124;6.05e-10;1!UBERON:0010115;6.05e-10;1!UBERON:0004140;6.05e-10;1!UBERON:0005425;6.05e-10;1!UBERON:0005062;1.52e-09;4!UBERON:0007284;1.52e-09;4 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!2.18e-31!115;UBERON:0001893!4.62e-09!34;UBERON:0001049!7.50e-09!57;UBERON:0005068!7.50e-09!57;UBERON:0006241!7.50e-09!57;UBERON:0007135!7.50e-09!57;UBERON:0001869!1.07e-08!32;UBERON:0002791!2.53e-08!33;UBERON:0002020!3.83e-08!34;UBERON:0003528!3.83e-08!34;UBERON:0003075!1.19e-07!86;UBERON:0007284!1.19e-07!86;UBERON:0002616!1.98e-07!59;UBERON:0000073!3.39e-07!94;UBERON:0001016!3.39e-07!94;UBERON:0005743!3.82e-07!86;UBERON:0002346!5.10e-07!90;UBERON:0001017!5.28e-07!82;UBERON:0003135!5.48e-07!11;UBERON:0002780!7.11e-07!41;UBERON:0001890!7.11e-07!41;UBERON:0006240!7.11e-07!41;UBERON:0003978!8.57e-07!3;UBERON:0009751!8.57e-07!3;UBERON:0000946!8.57e-07!3;UBERON:0002523!8.57e-07!3;UBERON:0005983!8.57e-07!3;UBERON:0002165!8.57e-07!3;UBERON:0002062!8.57e-07!3;UBERON:0007280!8.57e-07!3 | |ontology_enrichment_uberon=UBERON:0007023!2.18e-31!115;UBERON:0001893!4.62e-09!34;UBERON:0001049!7.50e-09!57;UBERON:0005068!7.50e-09!57;UBERON:0006241!7.50e-09!57;UBERON:0007135!7.50e-09!57;UBERON:0001869!1.07e-08!32;UBERON:0002791!2.53e-08!33;UBERON:0002020!3.83e-08!34;UBERON:0003528!3.83e-08!34;UBERON:0003075!1.19e-07!86;UBERON:0007284!1.19e-07!86;UBERON:0002616!1.98e-07!59;UBERON:0000073!3.39e-07!94;UBERON:0001016!3.39e-07!94;UBERON:0005743!3.82e-07!86;UBERON:0002346!5.10e-07!90;UBERON:0001017!5.28e-07!82;UBERON:0003135!5.48e-07!11;UBERON:0002780!7.11e-07!41;UBERON:0001890!7.11e-07!41;UBERON:0006240!7.11e-07!41;UBERON:0003978!8.57e-07!3;UBERON:0009751!8.57e-07!3;UBERON:0000946!8.57e-07!3;UBERON:0002523!8.57e-07!3;UBERON:0005983!8.57e-07!3;UBERON:0002165!8.57e-07!3;UBERON:0002062!8.57e-07!3;UBERON:0007280!8.57e-07!3 | ||
|ontology_enrichment_uberon_v019=UBERON:0005090;3.75e-18;2!UBERON:0001630;3.75e-18;2!UBERON:0003124;6.19e-13;3!UBERON:0000920;6.19e-13;3!UBERON:0003978;2.00e-12;3!UBERON:0000946;2.00e-12;3!UBERON:0002079;2.47e-10;1!UBERON:0002363;6.05e-10;1!UBERON:0002135;6.05e-10;1!UBERON:0002146;6.05e-10;1!UBERON:0000941;6.05e-10;1!UBERON:0001389;6.05e-10;1!UBERON:0007195;6.05e-10;1!UBERON:0000026;6.05e-10;1!UBERON:0008784;6.05e-10;1!UBERON:0001785;6.05e-10;1!UBERON:0002464;6.05e-10;1!UBERON:0004904;6.05e-10;1!UBERON:0006058;6.05e-10;1!UBERON:0002426;6.05e-10;1!UBERON:0003831;6.05e-10;1!UBERON:0003898;6.05e-10;1!UBERON:0004830;6.05e-10;1!UBERON:0003663;6.05e-10;1!UBERON:0004256;6.05e-10;1!UBERON:0001021;6.05e-10;1!UBERON:0004708;6.05e-10;1!UBERON:0002101;6.05e-10;1!UBERON:0004709;6.05e-10;1!UBERON:0005623;6.05e-10;1!UBERON:0003830;6.05e-10;1!UBERON:0005175;6.05e-10;1!UBERON:0002529;6.05e-10;1!UBERON:0010538;6.05e-10;1!UBERON:0003661;6.05e-10;1!UBERON:0010890;6.05e-10;1!UBERON:0002471;6.05e-10;1!UBERON:0001774;6.05e-10;1!UBERON:0001383;6.05e-10;1!UBERON:0010758;6.05e-10;1!UBERON:0010707;6.05e-10;1!UBERON:0001103;6.05e-10;1!UBERON:0000978;6.05e-10;1!UBERON:0002103;6.05e-10;1!UBERON:0001665;6.05e-10;1!UBERON:0003823;6.05e-10;1!UBERON:0000154;6.05e-10;1!UBERON:0010709;6.05e-10;1!UBERON:0007100;1.54e-08;25 | |ontology_enrichment_uberon_v019=UBERON:0005090;3.75e-18;2!UBERON:0001630;3.75e-18;2!UBERON:0003124;6.19e-13;3!UBERON:0000920;6.19e-13;3!UBERON:0003978;2.00e-12;3!UBERON:0000946;2.00e-12;3!UBERON:0002079;2.47e-10;1!UBERON:0002363;6.05e-10;1!UBERON:0002135;6.05e-10;1!UBERON:0002146;6.05e-10;1!UBERON:0000941;6.05e-10;1!UBERON:0001389;6.05e-10;1!UBERON:0007195;6.05e-10;1!UBERON:0000026;6.05e-10;1!UBERON:0008784;6.05e-10;1!UBERON:0001785;6.05e-10;1!UBERON:0002464;6.05e-10;1!UBERON:0004904;6.05e-10;1!UBERON:0006058;6.05e-10;1!UBERON:0002426;6.05e-10;1!UBERON:0003831;6.05e-10;1!UBERON:0003898;6.05e-10;1!UBERON:0004830;6.05e-10;1!UBERON:0003663;6.05e-10;1!UBERON:0004256;6.05e-10;1!UBERON:0001021;6.05e-10;1!UBERON:0004708;6.05e-10;1!UBERON:0002101;6.05e-10;1!UBERON:0004709;6.05e-10;1!UBERON:0005623;6.05e-10;1!UBERON:0003830;6.05e-10;1!UBERON:0005175;6.05e-10;1!UBERON:0002529;6.05e-10;1!UBERON:0010538;6.05e-10;1!UBERON:0003661;6.05e-10;1!UBERON:0010890;6.05e-10;1!UBERON:0002471;6.05e-10;1!UBERON:0001774;6.05e-10;1!UBERON:0001383;6.05e-10;1!UBERON:0010758;6.05e-10;1!UBERON:0010707;6.05e-10;1!UBERON:0001103;6.05e-10;1!UBERON:0000978;6.05e-10;1!UBERON:0002103;6.05e-10;1!UBERON:0001665;6.05e-10;1!UBERON:0003823;6.05e-10;1!UBERON:0000154;6.05e-10;1!UBERON:0010709;6.05e-10;1!UBERON:0007100;1.54e-08;25 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0005090,3.16e-18,2;UBERON:0001630,3.16e-18,2;UBERON:0000920,5.51e-13,3;UBERON:0003978,1.50e-12,3;UBERON:0009751,1.50e-12,3;UBERON:0000946,1.50e-12,3;UBERON:0002523,1.50e-12,3;UBERON:0005983,1.50e-12,3;UBERON:0002165,1.50e-12,3;UBERON:0002062,1.50e-12,3;UBERON:0007280,1.50e-12,3;UBERON:0003124,4.49e-12,7;UBERON:0002079,2.84e-10,1;UBERON:0002135,4.06e-10,1;UBERON:0002426,4.44e-10,1;UBERON:0003831,4.44e-10,1;UBERON:0003898,4.44e-10,1;UBERON:0004830,4.44e-10,1;UBERON:0003830,4.44e-10,1;UBERON:0005175,4.44e-10,1;UBERON:0001774,4.44e-10,1;UBERON:0001103,4.44e-10,1;UBERON:0010084,4.44e-10,1;UBERON:0000941,4.85e-10,1;UBERON:0001785,4.85e-10,1;UBERON:0002464,4.85e-10,1;UBERON:0004904,4.85e-10,1;UBERON:0001021,4.85e-10,1;UBERON:0003902,4.85e-10,1;UBERON:0005425,4.85e-10,1;UBERON:0002146,5.79e-10,1;UBERON:0005623,5.79e-10,1;UBERON:0002363,6.33e-10,1;UBERON:0007645,6.33e-10,1;UBERON:0007647,6.33e-10,1;UBERON:0010115,6.33e-10,1;UBERON:0005418,6.91e-10,1;UBERON:0001389,6.91e-10,1;UBERON:0000026,6.91e-10,1;UBERON:0008784,6.91e-10,1;UBERON:0006058,6.91e-10,1;UBERON:0003663,6.91e-10,1;UBERON:0004256,6.91e-10,1;UBERON:0004708,6.91e-10,1;UBERON:0002101,6.91e-10,1;UBERON:0004709,6.91e-10,1;UBERON:0002529,6.91e-10,1;UBERON:0010538,6.91e-10,1;UBERON:0003661,6.91e-10,1;UBERON:0010890,6.91e-10,1;UBERON:0002471,6.91e-10,1;UBERON:0001383,6.91e-10,1;UBERON:0004357,6.91e-10,1;UBERON:0004347,6.91e-10,1;UBERON:0005420,6.91e-10,1;UBERON:0005732,6.91e-10,1;UBERON:0010758,6.91e-10,1;UBERON:0010707,6.91e-10,1;UBERON:0000978,6.91e-10,1;UBERON:0002103,6.91e-10,1;UBERON:0001665,6.91e-10,1;UBERON:0003823,6.91e-10,1;UBERON:0000154,6.91e-10,1;UBERON:0010709,6.91e-10,1;UBERON:0005733,6.91e-10,1;UBERON:0005730,6.91e-10,1;UBERON:0007195,8.99e-10,1;UBERON:0007100,5.24e-08,27 | |||
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|short_description=p7@RAPGEF1 | |short_description=p7@RAPGEF1 | ||
}} | }} |
Latest revision as of 03:34, 16 September 2015
Short description: | p7@RAPGEF1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_7_at_RAPGEF1_5end |
Coexpression cluster: | C159_choriocarcinoma_pancreatic_placenta_chorionic_testicular_bronchioalveolar_seminal |
Association with transcript: | 63bp_to_ENST00000337036, ENST00000372190, ENST00000372191, ENST00000398415, ENST00000411834, ENST00000427994, ENST00000437236, NM_198679, uc004cbb.2_5end |
EntrezGene: | RAPGEF1 |
HGNC: | 4568 |
UniProt: | F5H4P5E9PDT1F5H704C9JL20Q5JUE5E7ETL5Q13905 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
chorionic membrane mesenchymal stem cell | 5.51e-13 | 3 |
germ line cell | 2.75e-12 | 7 |
germ cell | 2.75e-12 | 7 |