FFCP PHASE1:Hg19::chr1:114414316..114414407,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr1:114414316..114414407,- to FFCP PHASE1:Hg19::chr1:114414316..114414407,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=26191 | |EntrezGene=26191 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9652 | |HGNC=9652 | ||
|TSSclassifier=strong | |||
|UniProt=Q9Y2R2,E9PMT0,E9PPI1,E9PLD8,E9PMK2,E9PM87,F5H2S8,B4DZW8 | |UniProt=Q9Y2R2,E9PMT0,E9PPI1,E9PLD8,E9PMK2,E9PM87,F5H2S8,B4DZW8 | ||
|association_with_transcript=0bp_to_ENST00000359785,ENST00000420377,ENST00000460620,ENST00000525799,ENST00000528414,ENST00000529045,ENST00000532224,ENST00000534519,ENST00000538253,NM_001193431,NM_012411,NM_015967,uc001eds.2,uc001edt.2,uc001edu.2,uc009wgq.2,uc009wgr.2,uc009wgs.2,uc010owo.1_5end | |||
|cluster_id=chr1:114414316..114414407,- | |||
|coexpression_cluster_id=C1462 | |||
|description=CAGE_peak_1_at_PTPN22_5end | |||
|id=chr1:114414316..114414407,- | |||
|ontology_enrichment_celltype=CL:0000037!1.32e-71!172;CL:0000566!1.32e-71!172;CL:0002032!1.46e-67!165;CL:0000837!1.46e-67!165;CL:0000988!1.09e-62!182;CL:0000738!6.79e-60!140;CL:0002031!1.01e-50!124;CL:0002087!1.46e-47!119;CL:0000763!1.19e-35!112;CL:0000049!1.19e-35!112;CL:0000134!3.24e-30!358;CL:0000542!9.47e-29!53;CL:0000051!9.47e-29!53;CL:0002320!1.50e-28!365;CL:0000838!2.97e-28!52;CL:0000048!6.65e-27!430;CL:0000723!1.24e-25!436;CL:0000034!3.15e-25!444;CL:0000766!3.75e-24!76;CL:0000557!8.04e-22!71;CL:0000219!2.53e-21!390;CL:0000839!9.93e-21!70;CL:0002009!1.62e-18!65;CL:0002194!2.04e-17!63;CL:0000576!2.04e-17!63;CL:0000040!2.04e-17!63;CL:0000559!2.04e-17!63;CL:0000084!1.95e-14!25;CL:0000827!1.95e-14!25;CL:0002057!3.96e-14!42;CL:0000945!4.55e-13!24;CL:0000826!4.55e-13!24;CL:0000791!9.52e-12!18;CL:0000789!9.52e-12!18;CL:0002420!9.52e-12!18;CL:0002419!9.52e-12!18;CL:0000790!9.52e-12!18;CL:0000860!1.26e-11!45;CL:0000236!1.14e-08!14;CL:0000625!2.92e-08!11 | |||
|ontology_enrichment_celltype_v019=CL:0000542;6.74e-19;53!CL:0000084;3.84e-16;25!CL:0000738;5.44e-15;136!CL:0002087;8.72e-15;104!CL:0000945;9.93e-15;24!CL:0000791;4.17e-13;18!CL:0000789;4.17e-13;18!CL:0002419;4.17e-13;18!CL:0000473;5.52e-13;39!CL:0000234;5.52e-13;39!CL:0000766;1.23e-12;69!CL:0000988;1.36e-12;177!CL:0000860;1.80e-12;33!CL:0002057;1.80e-12;33!CL:0000763;7.01e-12;100!CL:0000576;2.48e-11;48!CL:0000625;3.68e-09;11!CL:0000236;7.07e-09;13!CL:0000219;2.95e-07;193 | |||
|ontology_enrichment_celltype_v019_2=CL:0000037,1.44e-83,168;CL:0002032,5.87e-79,161;CL:0000837,5.87e-79,161;CL:0000988,5.39e-75,177;CL:0000738,3.64e-72,136;CL:0002031,1.23e-61,120;CL:0002087,5.48e-58,115;CL:0000763,2.35e-42,108;CL:0000049,2.35e-42,108;CL:0000542,2.21e-32,53;CL:0000051,2.21e-32,53;CL:0000838,8.07e-32,52;CL:0000766,7.92e-31,72;CL:0000134,3.27e-29,354;CL:0000557,4.22e-28,67;CL:0002320,2.18e-27,361;CL:0000839,9.06e-27,66;CL:0000048,1.02e-25,427;CL:0000723,2.10e-24,433;CL:0000034,3.54e-24,441;CL:0002009,3.62e-24,61;CL:0002194,7.54e-23,59;CL:0000576,7.54e-23,59;CL:0000040,7.54e-23,59;CL:0000559,7.54e-23,59;CL:0000219,1.59e-21,386;CL:0000473,1.21e-18,48;CL:0000234,1.21e-18,48;CL:0000084,3.78e-16,25;CL:0000827,3.78e-16,25;CL:0000860,8.43e-16,42;CL:0002057,8.43e-16,42;CL:0000945,1.34e-14,24;CL:0000826,1.34e-14,24;CL:0000791,4.21e-13,18;CL:0000789,4.21e-13,18;CL:0002420,4.21e-13,18;CL:0002419,4.21e-13,18;CL:0000790,4.21e-13,18;CL:0000236,1.29e-09,14;CL:0000625,3.73e-09,11 | |||
|ontology_enrichment_development_v019=CL:0000051;6.74e-19;53!CL:0000790;4.17e-13;18!CL:0002057;1.16e-11;42!CL:0000049;1.83e-11;108 | |||
|ontology_enrichment_disease=DOID:2531!2.77e-17!51;DOID:0060083!2.77e-17!51;DOID:1240!5.60e-13!39;DOID:8692!1.07e-09!31 | |||
|ontology_enrichment_disease_v019=DOID:2531;5.18e-11;51!DOID:0060083;5.18e-11;51!DOID:1240;3.78e-10;39!DOID:8692;3.47e-09;31!DOID:0060058;6.36e-07;10 | |||
|ontology_enrichment_disease_v019_2=DOID:2531,5.07e-18,51;DOID:0060083,5.07e-18,51;DOID:1240,3.43e-13,39;DOID:8692,1.49e-09,31;DOID:0060058,6.37e-07,10 | |||
|ontology_enrichment_uberon=UBERON:0002390!5.41e-28!102;UBERON:0003061!5.41e-28!102;UBERON:0002384!3.03e-27!375;UBERON:0002193!1.86e-24!112;UBERON:0002371!1.50e-20!80;UBERON:0001474!7.62e-19!86;UBERON:0004765!6.11e-16!101;UBERON:0001434!6.11e-16!101;UBERON:0002405!5.46e-13!115;UBERON:0002204!3.06e-12!167;UBERON:0003081!1.23e-11!216 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,4.17e-34,98;UBERON:0003061,4.17e-34,98;UBERON:0002193,1.64e-30,108;UBERON:0002384,1.41e-26,371;UBERON:0002405,6.20e-26,93;UBERON:0002371,1.25e-25,76;UBERON:0001474,2.49e-23,82;UBERON:0004765,4.38e-20,90;UBERON:0001434,7.43e-17,100;UBERON:0003081,9.54e-16,203;UBERON:0002204,2.63e-11,167 | |||
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|phase1_expression=1.81678379270557,5.56661362116556,0.986680828671798,1.0007329835313,0.893922188854576,2.61701557230111,0,3.79031924056099,0,0,0,0,0,0.123766352960047,0.331397375727916,4.70627602516243,3.01347264011988,5.84248072309899,3.90346239032406,0.246242116153576,0.204000691244253,0,0,0.136874425072884,0,46.3065238832585,41.1323953144228,50.3749000407547,18.4881210118985,62.1803624917485,16.8749574414523,0,0,0,110.31329362635,61.4171084345661,20.2584303141045,27.6997704265939,21.4582558793052,18.2289131401316,5.37397138175818,16.194683300949,11.5909005435384,20.0649569515799,17.760169353374,9.46077838632483,24.1726198381912,21.3807301771349,19.5115013663915,14.3846196161075,14.6011602721587,12.0605937243178,29.6481285433492,23.8829332926016,20.3139729891513,20.5184150101439,18.0118059038178,16.8542613333813,29.0779697752357,25.6743221660875,17.9014395223732,9.89553900560148,11.7683557996763,11.5080682643827,16.8321358404579,16.4541715160431,6.22822248995575,15.3261685806613,14.0800387973454,18.2438629552298,16.9511860737343,25.411156883142,12.6584954976354,10.985274888221,6.16552469898626,13.2084946670277,33.0246175570696,26.4311331401051,45.9675177953649,3.99017841237748,2.98375015798635,4.93193215164512,58.0787606722365,49.1524750135918,56.9285922472675,55.9016591562124,56.4558341720778,57.4752439954483,55.5277693139284,54.3810640085158,22.7685187643779,28.1873850898051,30.5818582500183,18.5039860010636,20.1783082673353,15.2762769169545,33.8340804595793,23.1876350022007,26.7281948699362,81.2526367598696,38.4588274627637,39.2961678759829,15.5861382726329,114.864181048614,58.6265755874926,53.6112024892363,73.9294548078493,65.7108470192714,77.3853117981275,76.9569393545204,77.9307050156092,106.937338636234,42.2616705011872,33.9776851673936,28.2245914273437,78.0701371186231,53.2676486106671,41.9225483488809,59.9656670086222,55.4303820923928,47.5290921315186,57.9775747113508,54.2070428679982,62.4574662433562,57.4681342140791,68.6654030927649,68.1536237444469,74.7961017363757,54.290359744052,36.3509253745825,0,3.35350429851818,0.12786256184353,1.0843174571537,0,3.18662341713812,3.9764297352555,1.45990461090791,1.79616152611729,1.55210578223795,1.14185221401064,2.0956652079634,0,0,41.2175189941448,36.0448556209483,36.5634391426879,22.1796280603968,22.8797964312051,15.6012150558417,0.79504962946682,1.72046919021225,0.347140501607594,1.13061588384802,0.838998872419812,4.67700671298115,2.50793959844173,1.29208379584664,3.20189636418039,0.33472061276467,0,0,0,5.8826092855339,0.81014194788176,1.16089646769304,0.898117490504679,1.0135033243499,1.53316637465883,3.79706263827252,2.74802615895611,28.9916918359339,31.022421131866,0,0,0.633152558322899,3.04541115870403,0.573673241497627,1.06400514659507,0.560677600142307,1.06748995729705,0.49333509683432,0,0.538842688278752,0.980771418680752,0,0.576175924479999,0.70296429550139,1.87296046098192,0,1.34503812496621,3.17073146338165,0.971237666208789,0.98315564691574,1.22492502752936,0.859840221182376,1.75653827998801,0,0.741800787835671,0,0,1.0100166837244,0.500474079487857,1.6623846929051,0.438977620880838,0.612975591598039,1.05166641234618,1.13432183160021,0.538168907066586,0,0.423863802319124,2.70081986475962,2.37020817248409,0.515281080091258,0.18611685633159,4.72573730275545,0.487185025805993,0.757301322732344,0.368199594569197,0,0,0.906768884048762,0.508681776931463,0.193260853163297,1.63647672354501,0,0,0,0,0.10366105501537,0.252320850875628,0,0,2.57296375277154,0,13.0023019848954,17.3251075600701,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.982827216677626,0,58.7145922221485,0,0.857839051492628,0.439001141634502,0,0.603173834469785,1.11106134190236,0,1.03993478527958,1.44331342025273,0.231860809950154,0.939269553886573,0,0,0,0,0,35.94768288876,50.0769127397969,33.5906426772526,2.81201501960331,1.00789276919316,0.850650583454319,0.0895585227028483,1.74380363108377,0,452.264852388476,56.4390462024779,64.8937001642617,63.9892593171309,64.7623683477329,0,0,0,0,0.102827492703324,0,0,0.560655421726804,0,2.56684000373325,0.775630294546667,0,2.535908257668,0.26593811658487,0,2.05765899409714,1.41849132023278,0.532844358032199,0.285955987316295,0,0.823240336780769,2.93162565864362,0,1.58390374586686,3.01439377059586,0,0.799783929456456,12.162378064119,17.0767411086923,29.5167515276244,0,0,8.5582143024431,2.31650090668127,0.61642896765115,5.72995082367666,53.1283582529319,74.0835658359246,56.278797038334,47.2302373509474,0,0,0,0.167516265334349,0,34.4543231015704,44.8742188806037,41.4415513436035,0,1.50051156317903,0.813795071099207,0.207970861530807,0,0.315404830067869,0,0.902838299183157,2.27407504055985,0,0,0,0.347534457872331,0,0,39.9062290417173,29.3371313113319,28.1760752601093,0,0,0,0.496215615637554,1.2276957863045,0.561320188866147,2.05022638809122,1.53512174720011,0.321707842287215,0,3.70103265126373,3.01854933032316,7.06293541718759,10.904343012856,3.7187321107187,0,0,0.184161977871793,0,0,0,0,0.0770153371044148,0,0,0.527758144464379,0,0.680374821106063,0.431831832204279,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| ||
|short_description=p1@PTPN22 | |||
}} | }} |
Latest revision as of 06:16, 16 September 2015
Short description: | p1@PTPN22 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_PTPN22_5end |
Coexpression cluster: | C1462_Mast_immature_CD4_Macrophage_Dendritic_CD8_CD19 |
Association with transcript: | 0bp_to_ENST00000359785, ENST00000420377, ENST00000460620, ENST00000525799, ENST00000528414, ENST00000529045, ENST00000532224, ENST00000534519, ENST00000538253, NM_001193431, NM_012411, NM_015967, uc001eds.2, uc001edt.2, uc001edu.2, uc009wgq.2, uc009wgr.2, uc009wgs.2, uc010owo.1_5end |
EntrezGene: | PTPN22 |
HGNC: | 9652 |
UniProt: | Q9Y2R2E9PMT0E9PPI1E9PLD8E9PMK2E9PM87F5H2S8B4DZW8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 4.17e-34 | 98 |
blood island | 4.17e-34 | 98 |
hemolymphoid system | 1.64e-30 | 108 |
connective tissue | 1.41e-26 | 371 |
immune system | 6.20e-26 | 93 |
bone marrow | 1.25e-25 | 76 |
bone element | 2.49e-23 | 82 |
skeletal element | 4.38e-20 | 90 |
skeletal system | 7.43e-17 | 100 |
lateral plate mesoderm | 9.54e-16 | 203 |
musculoskeletal system | 2.63e-11 | 167 |
Ontology term | p-value | n |
---|---|---|
hematologic cancer | 5.07e-18 | 51 |
immune system cancer | 5.07e-18 | 51 |
leukemia | 3.43e-13 | 39 |
myeloid leukemia | 1.49e-09 | 31 |
lymphoma | 6.37e-07 | 10 |