FFCP PHASE1:Hg19::chr1:114695537..114695554,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=148281 | |EntrezGene=148281 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18638 | |HGNC=18638 | ||
|TSSclassifier=strong | |||
|UniProt=B1AMB6 | |UniProt=B1AMB6 | ||
|association_with_transcript=47bp_to_ENST00000447981_5end | |association_with_transcript=47bp_to_ENST00000447981_5end | ||
|cluster_id=chr1:114695537..114695554,- | |||
|coexpression_cluster_id=C49 | |||
|description=CAGE_peak_1_at_SYT6_5end | |description=CAGE_peak_1_at_SYT6_5end | ||
|id=chr1:114695537..114695554,- | |id=chr1:114695537..114695554,- | ||
|ontology_enrichment_celltype=CL:0000047!1.51e-13!8;CL:0000540!1.45e-10!6;CL:0000031!1.45e-10!6;CL:0000404!1.45e-10!6;CL:0002322!1.62e-09!5 | |ontology_enrichment_celltype=CL:0000047!1.51e-13!8;CL:0000540!1.45e-10!6;CL:0000031!1.45e-10!6;CL:0000404!1.45e-10!6;CL:0002322!1.62e-09!5 | ||
|ontology_enrichment_celltype_v019=CL:0000540;2.08e-21;6!CL:0000404;2.08e-21;6!CL:0002322;3.42e-19;5!CL:0002577;2.52e-11;3!CL:0002321;3.14e-11;15!CL:0000047;2.47e-08;2!CL:0002536;5.02e-08;2!CL:0002319;2.63e-07;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000047,3.89e-28,8;CL:0000540,1.66e-21,6;CL:0000031,1.66e-21,6;CL:0000404,1.66e-21,6;CL:0002322,3.50e-19,5;CL:0002577,1.78e-11,3;CL:0000133,2.31e-08,59;CL:0002536,5.21e-08,2;CL:0002319,2.46e-07,25 | |||
|ontology_enrichment_development_v019=CL:0000031;2.08e-21;6 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:3095;3.95e-07;22!DOID:2994;3.95e-07;22 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,4.07e-07,22;DOID:2994,4.07e-07,22 | |||
|ontology_enrichment_uberon=UBERON:0001017!1.05e-38!82;UBERON:0005743!1.01e-37!86;UBERON:0000073!1.60e-37!94;UBERON:0001016!1.60e-37!94;UBERON:0001049!2.09e-34!57;UBERON:0005068!2.09e-34!57;UBERON:0006241!2.09e-34!57;UBERON:0007135!2.09e-34!57;UBERON:0002616!3.65e-27!59;UBERON:0007023!1.35e-26!115;UBERON:0000955!2.15e-25!69;UBERON:0006238!2.15e-25!69;UBERON:0002346!3.01e-25!90;UBERON:0002780!1.65e-24!41;UBERON:0001890!1.65e-24!41;UBERON:0006240!1.65e-24!41;UBERON:0003075!3.19e-24!86;UBERON:0007284!3.19e-24!86;UBERON:0003080!1.05e-23!42;UBERON:0000924!2.62e-23!173;UBERON:0006601!2.62e-23!173;UBERON:0001893!1.14e-22!34;UBERON:0002020!2.40e-22!34;UBERON:0003528!2.40e-22!34;UBERON:0004121!2.87e-22!169;UBERON:0002791!1.78e-21!33;UBERON:0001869!2.72e-20!32;UBERON:0002619!3.54e-19!22;UBERON:0001950!5.76e-17!20;UBERON:0000956!2.84e-16!25;UBERON:0000203!2.84e-16!25;UBERON:0000153!6.74e-16!129;UBERON:0007811!6.74e-16!129;UBERON:0003056!8.12e-16!61;UBERON:0000033!9.54e-16!123;UBERON:0003076!7.90e-12!15;UBERON:0003057!7.90e-12!15;UBERON:0000922!2.19e-11!612;UBERON:0004732!1.80e-09!13;UBERON:0004733!2.70e-08!12;UBERON:0002028!2.70e-08!12;UBERON:0007277!2.70e-08!12;UBERON:0000468!3.70e-08!659;UBERON:0000923!4.73e-08!604;UBERON:0005291!4.73e-08!604;UBERON:0006598!4.73e-08!604;UBERON:0002532!4.73e-08!604;UBERON:0002050!5.48e-08!605;UBERON:0005423!5.48e-08!605;UBERON:0002420!1.05e-07!9;UBERON:0007245!1.05e-07!9;UBERON:0010009!1.05e-07!9;UBERON:0010011!1.05e-07!9;UBERON:0000454!1.05e-07!9;UBERON:0000349!1.15e-07!5;UBERON:0002308!1.50e-07!9;UBERON:0000125!1.50e-07!9;UBERON:0000064!5.59e-07!219;UBERON:0001987!9.04e-07!4;UBERON:0004340!9.04e-07!4;UBERON:0002680!9.85e-07!9;UBERON:0001895!9.85e-07!9;UBERON:0010092!9.85e-07!9 | |ontology_enrichment_uberon=UBERON:0001017!1.05e-38!82;UBERON:0005743!1.01e-37!86;UBERON:0000073!1.60e-37!94;UBERON:0001016!1.60e-37!94;UBERON:0001049!2.09e-34!57;UBERON:0005068!2.09e-34!57;UBERON:0006241!2.09e-34!57;UBERON:0007135!2.09e-34!57;UBERON:0002616!3.65e-27!59;UBERON:0007023!1.35e-26!115;UBERON:0000955!2.15e-25!69;UBERON:0006238!2.15e-25!69;UBERON:0002346!3.01e-25!90;UBERON:0002780!1.65e-24!41;UBERON:0001890!1.65e-24!41;UBERON:0006240!1.65e-24!41;UBERON:0003075!3.19e-24!86;UBERON:0007284!3.19e-24!86;UBERON:0003080!1.05e-23!42;UBERON:0000924!2.62e-23!173;UBERON:0006601!2.62e-23!173;UBERON:0001893!1.14e-22!34;UBERON:0002020!2.40e-22!34;UBERON:0003528!2.40e-22!34;UBERON:0004121!2.87e-22!169;UBERON:0002791!1.78e-21!33;UBERON:0001869!2.72e-20!32;UBERON:0002619!3.54e-19!22;UBERON:0001950!5.76e-17!20;UBERON:0000956!2.84e-16!25;UBERON:0000203!2.84e-16!25;UBERON:0000153!6.74e-16!129;UBERON:0007811!6.74e-16!129;UBERON:0003056!8.12e-16!61;UBERON:0000033!9.54e-16!123;UBERON:0003076!7.90e-12!15;UBERON:0003057!7.90e-12!15;UBERON:0000922!2.19e-11!612;UBERON:0004732!1.80e-09!13;UBERON:0004733!2.70e-08!12;UBERON:0002028!2.70e-08!12;UBERON:0007277!2.70e-08!12;UBERON:0000468!3.70e-08!659;UBERON:0000923!4.73e-08!604;UBERON:0005291!4.73e-08!604;UBERON:0006598!4.73e-08!604;UBERON:0002532!4.73e-08!604;UBERON:0002050!5.48e-08!605;UBERON:0005423!5.48e-08!605;UBERON:0002420!1.05e-07!9;UBERON:0007245!1.05e-07!9;UBERON:0010009!1.05e-07!9;UBERON:0010011!1.05e-07!9;UBERON:0000454!1.05e-07!9;UBERON:0000349!1.15e-07!5;UBERON:0002308!1.50e-07!9;UBERON:0000125!1.50e-07!9;UBERON:0000064!5.59e-07!219;UBERON:0001987!9.04e-07!4;UBERON:0004340!9.04e-07!4;UBERON:0002680!9.85e-07!9;UBERON:0001895!9.85e-07!9;UBERON:0010092!9.85e-07!9 | ||
|ontology_enrichment_uberon_v019=UBERON:0000073;2.18e-12;53!UBERON:0002616;2.18e-12;53!UBERON:0001893;2.39e-11;34!UBERON:0002780;2.82e-11;41!UBERON:0001890;2.82e-11;41!UBERON:0001869;1.91e-10;32!UBERON:0001016;1.42e-09;83!UBERON:0001950;5.58e-09;20!UBERON:0002791;6.47e-09;32!UBERON:0001987;1.35e-08;4!UBERON:0001017;2.22e-08;75!UBERON:0002619;4.35e-08;22!UBERON:0000922;4.71e-08;49!UBERON:0003528;5.47e-08;34!UBERON:0002020;5.47e-08;34!UBERON:0005162;8.92e-08;2!UBERON:0000122;8.92e-08;2!UBERON:0000956;5.21e-07;25!UBERON:0000203;5.21e-07;25 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,5.98e-30,89;UBERON:0001017,2.79e-27,81;UBERON:0001049,2.21e-18,56;UBERON:0005068,2.21e-18,56;UBERON:0006241,2.21e-18,56;UBERON:0007135,2.21e-18,56;UBERON:0004121,1.34e-16,171;UBERON:0000924,1.34e-16,171;UBERON:0006601,1.34e-16,171;UBERON:0000073,1.80e-15,53;UBERON:0002616,1.80e-15,53;UBERON:0002780,3.17e-14,41;UBERON:0001890,3.17e-14,41;UBERON:0003080,3.17e-14,41;UBERON:0006240,3.17e-14,41;UBERON:0001893,3.87e-13,34;UBERON:0002346,4.31e-13,86;UBERON:0003075,1.86e-12,82;UBERON:0007284,1.86e-12,82;UBERON:0000955,1.90e-12,68;UBERON:0006238,1.90e-12,68;UBERON:0001869,7.78e-12,32;UBERON:0011216,1.15e-10,223;UBERON:0003056,6.89e-10,61;UBERON:0002791,6.96e-10,32;UBERON:0003528,3.40e-09,34;UBERON:0002020,3.40e-09,34;UBERON:0001950,5.69e-09,20;UBERON:0010371,7.82e-09,104;UBERON:0001987,1.05e-08,4;UBERON:0004340,1.05e-08,4;UBERON:0002619,4.43e-08,22;UBERON:0005162,7.39e-08,2;UBERON:0000122,7.39e-08,2;UBERON:0000956,5.30e-07,25;UBERON:0000203,5.30e-07,25;UBERON:0007023,9.01e-07,114 | |||
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|short_description=p1@SYT6 | |short_description=p1@SYT6 | ||
}} | }} |
Latest revision as of 06:55, 16 September 2015
Short description: | p1@SYT6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SYT6_5end |
Coexpression cluster: | C49_H9_iPS_testicular_HES3GFP_teratocarcinoma_hepatoblastoma_choriocarcinoma |
Association with transcript: | 47bp_to_ENST00000447981_5end |
EntrezGene: | SYT6 |
HGNC: | 18638 |
UniProt: | B1AMB6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuronal stem cell | 3.89e-28 | 8 |
neuron | 1.66e-21 | 6 |
neuroblast | 1.66e-21 | 6 |
electrically signaling cell | 1.66e-21 | 6 |
embryonic stem cell | 3.50e-19 | 5 |
placental epithelial cell | 1.78e-11 | 3 |
neurectodermal cell | 2.31e-08 | 59 |
amniotic epithelial cell | 5.21e-08 | 2 |
neural cell | 2.46e-07 | 25 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 4.07e-07 | 22 |
germ cell cancer | 4.07e-07 | 22 |