FFCP PHASE1:Hg19::chr13:107220455..107220517,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr13:107220455..107220517,-
|short_description=p1@ARGLU1
|description=CAGE_peak_1_at_ARGLU1_5end
|association_with_transcript=0bp_to_ENST00000400198,ENST000004...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=55082 | |EntrezGene=55082 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=25482 | |HGNC=25482 | ||
|TSSclassifier=strong | |||
|UniProt=Q9NWB6,E7EUG0 | |UniProt=Q9NWB6,E7EUG0 | ||
|association_with_transcript=0bp_to_ENST00000400198,ENST00000426600,NM_018011,uc001vqk.3_5end | |||
|cluster_id=chr13:107220455..107220517,- | |||
|coexpression_cluster_id=C986 | |||
|description=CAGE_peak_1_at_ARGLU1_5end | |||
|id=chr13:107220455..107220517,- | |||
|ontology_enrichment_celltype=CL:0000037!3.69e-19!172;CL:0000566!3.69e-19!172;CL:0000738!2.54e-17!140;CL:0000988!2.83e-17!182;CL:0000542!3.14e-17!53;CL:0000051!3.14e-17!53;CL:0000838!5.50e-17!52;CL:0002032!1.32e-16!165;CL:0000837!1.32e-16!165;CL:0002087!6.25e-13!119;CL:0002031!1.01e-12!124;CL:0000791!6.77e-10!18;CL:0000789!6.77e-10!18;CL:0002420!6.77e-10!18;CL:0002419!6.77e-10!18;CL:0000790!6.77e-10!18;CL:0000084!7.94e-09!25;CL:0000827!7.94e-09!25;CL:0000945!3.63e-08!24;CL:0000826!3.63e-08!24;CL:0000236!8.01e-07!14 | |||
|ontology_enrichment_celltype_v019=CL:0000542;2.46e-10;53!CL:0000791;6.69e-10;18!CL:0000789;6.69e-10;18!CL:0002419;6.69e-10;18!CL:0000084;7.83e-09;25!CL:0000945;3.74e-08;24!CL:0000236;9.10e-07;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000037,1.38e-19,168;CL:0000988,4.24e-18,177;CL:0000738,8.30e-18,136;CL:0000542,3.14e-17,53;CL:0000051,3.14e-17,53;CL:0002032,5.37e-17,161;CL:0000837,5.37e-17,161;CL:0000838,5.50e-17,52;CL:0002087,2.30e-13,115;CL:0002031,3.95e-13,120;CL:0000791,6.77e-10,18;CL:0000789,6.77e-10,18;CL:0002420,6.77e-10,18;CL:0002419,6.77e-10,18;CL:0000790,6.77e-10,18;CL:0000084,7.94e-09,25;CL:0000827,7.94e-09,25;CL:0000945,3.63e-08,24;CL:0000826,3.63e-08,24;CL:0000236,8.01e-07,14 | |||
|ontology_enrichment_development_v019=CL:0000051;2.46e-10;53!CL:0000790;6.69e-10;18!UBERON:0006601;8.04e-07;82 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!2.53e-18!115;UBERON:0001049!5.07e-18!57;UBERON:0005068!5.07e-18!57;UBERON:0006241!5.07e-18!57;UBERON:0007135!5.07e-18!57;UBERON:0002780!2.66e-16!41;UBERON:0001890!2.66e-16!41;UBERON:0006240!2.66e-16!41;UBERON:0000073!3.43e-16!94;UBERON:0001016!3.43e-16!94;UBERON:0003080!3.64e-16!42;UBERON:0001017!6.76e-16!82;UBERON:0005743!3.70e-15!86;UBERON:0000955!1.37e-14!69;UBERON:0006238!1.37e-14!69;UBERON:0002616!2.18e-14!59;UBERON:0002020!3.13e-13!34;UBERON:0003528!3.13e-13!34;UBERON:0001893!4.47e-13!34;UBERON:0002791!6.94e-13!33;UBERON:0001869!3.56e-12!32;UBERON:0002619!9.33e-10!22;UBERON:0003075!9.36e-10!86;UBERON:0007284!9.36e-10!86;UBERON:0002346!1.85e-09!90;UBERON:0000956!2.87e-09!25;UBERON:0000203!2.87e-09!25;UBERON:0001950!9.17e-09!20;UBERON:0003056!1.49e-08!61;UBERON:0000153!1.27e-07!129;UBERON:0007811!1.27e-07!129 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;5.45e-12;41!UBERON:0001890;5.45e-12;41!UBERON:0003528;1.77e-11;34!UBERON:0002020;1.77e-11;34!UBERON:0002791;2.68e-11;32!UBERON:0001893;3.40e-11;34!UBERON:0001869;5.66e-11;32!UBERON:0000073;1.36e-10;53!UBERON:0002616;1.36e-10;53!UBERON:0002619;9.42e-10;22!UBERON:0000956;2.91e-09;25!UBERON:0000203;2.91e-09;25!UBERON:0001950;9.26e-09;20!UBERON:0001017;1.13e-07;75!UBERON:0001016;1.44e-07;83!UBERON:0000955;2.85e-07;68 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001049,4.10e-18,56;UBERON:0005068,4.10e-18,56;UBERON:0006241,4.10e-18,56;UBERON:0007135,4.10e-18,56;UBERON:0007023,7.72e-18,114;UBERON:0000073,4.72e-17,53;UBERON:0002616,4.72e-17,53;UBERON:0001016,6.46e-17,89;UBERON:0002780,2.66e-16,41;UBERON:0001890,2.66e-16,41;UBERON:0003080,2.66e-16,41;UBERON:0006240,2.66e-16,41;UBERON:0001017,6.50e-16,81;UBERON:0000955,1.29e-14,68;UBERON:0006238,1.29e-14,68;UBERON:0003528,3.13e-13,34;UBERON:0002020,3.13e-13,34;UBERON:0001893,4.47e-13,34;UBERON:0002791,1.53e-12,32;UBERON:0001869,3.56e-12,32;UBERON:0003075,1.47e-10,82;UBERON:0007284,1.47e-10,82;UBERON:0002346,3.24e-10,86;UBERON:0002619,9.33e-10,22;UBERON:0000956,2.87e-09,25;UBERON:0000203,2.87e-09,25;UBERON:0003056,6.59e-09,61;UBERON:0001950,9.17e-09,20 | |||
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| ||
|short_description=p1@ARGLU1 | |||
}} | }} |
Latest revision as of 10:35, 16 September 2015
Short description: | p1@ARGLU1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_ARGLU1_5end |
Coexpression cluster: | C986_cerebellum_CD4_granulocyte_Mast_pineal_non_pituitary |
Association with transcript: | 0bp_to_ENST00000400198, ENST00000426600, NM_018011, uc001vqk.3_5end |
EntrezGene: | ARGLU1 |
HGNC: | 25482 |
UniProt: | Q9NWB6E7EUG0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic stem cell | 1.38e-19 | 168 |
hematopoietic cell | 4.24e-18 | 177 |
leukocyte | 8.30e-18 | 136 |
lymphocyte | 3.14e-17 | 53 |
common lymphoid progenitor | 3.14e-17 | 53 |
hematopoietic oligopotent progenitor cell | 5.37e-17 | 161 |
hematopoietic multipotent progenitor cell | 5.37e-17 | 161 |
lymphoid lineage restricted progenitor cell | 5.50e-17 | 52 |
nongranular leukocyte | 2.30e-13 | 115 |
hematopoietic lineage restricted progenitor cell | 3.95e-13 | 120 |
mature alpha-beta T cell | 6.77e-10 | 18 |
alpha-beta T cell | 6.77e-10 | 18 |
immature T cell | 6.77e-10 | 18 |
mature T cell | 6.77e-10 | 18 |
immature alpha-beta T cell | 6.77e-10 | 18 |
T cell | 7.94e-09 | 25 |
pro-T cell | 7.94e-09 | 25 |
lymphocyte of B lineage | 3.63e-08 | 24 |
pro-B cell | 3.63e-08 | 24 |
B cell | 8.01e-07 | 14 |
Ontology term | p-value | n |
---|---|---|
neural tube | 4.10e-18 | 56 |
neural rod | 4.10e-18 | 56 |
future spinal cord | 4.10e-18 | 56 |
neural keel | 4.10e-18 | 56 |
adult organism | 7.72e-18 | 114 |
regional part of nervous system | 4.72e-17 | 53 |
regional part of brain | 4.72e-17 | 53 |
nervous system | 6.46e-17 | 89 |
regional part of forebrain | 2.66e-16 | 41 |
forebrain | 2.66e-16 | 41 |
anterior neural tube | 2.66e-16 | 41 |
future forebrain | 2.66e-16 | 41 |
central nervous system | 6.50e-16 | 81 |
brain | 1.29e-14 | 68 |
future brain | 1.29e-14 | 68 |
brain grey matter | 3.13e-13 | 34 |
gray matter | 3.13e-13 | 34 |
telencephalon | 4.47e-13 | 34 |
regional part of telencephalon | 1.53e-12 | 32 |
cerebral hemisphere | 3.56e-12 | 32 |
neural plate | 1.47e-10 | 82 |
presumptive neural plate | 1.47e-10 | 82 |
neurectoderm | 3.24e-10 | 86 |
regional part of cerebral cortex | 9.33e-10 | 22 |
cerebral cortex | 2.87e-09 | 25 |
pallium | 2.87e-09 | 25 |
pre-chordal neural plate | 6.59e-09 | 61 |
neocortex | 9.17e-09 | 20 |