FFCP PHASE1:Hg19::chr1:235752332..235752375,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(8 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=2786 | |EntrezGene=2786 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4407 | |HGNC=4407 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-73bp_to_ENST00000484517_5end | |association_with_transcript=-73bp_to_ENST00000484517_5end | ||
|cluster_id=chr1:235752332..235752375,- | |||
|description=CAGE_peak_5_at_GNG4_5end | |description=CAGE_peak_5_at_GNG4_5end | ||
|id=chr1:235752332..235752375,- | |id=chr1:235752332..235752375,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0005795;7.50e-07;10 | |||
|ontology_enrichment_disease=DOID:2394!3.44e-12!14 | |||
|ontology_enrichment_disease_v019=DOID:2394;1.53e-25;14!DOID:193;1.18e-12;29!DOID:120;8.30e-12;27!DOID:0060084;8.38e-10;3!DOID:127;8.38e-10;3!DOID:0060072;2.05e-07;4 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,9.97e-26,14;DOID:193,1.05e-12,29;DOID:120,6.77e-12,27;DOID:0060084,8.31e-10,3;DOID:127,8.31e-10,3;DOID:0060072,2.03e-07,4 | |||
|ontology_enrichment_uberon=UBERON:0000955!1.30e-13!69;UBERON:0006238!1.30e-13!69;UBERON:0002619!3.72e-13!22;UBERON:0001049!1.69e-12!57;UBERON:0005068!1.69e-12!57;UBERON:0006241!1.69e-12!57;UBERON:0007135!1.69e-12!57;UBERON:0001017!6.73e-12!82;UBERON:0002020!7.69e-12!34;UBERON:0003528!7.69e-12!34;UBERON:0001950!1.23e-11!20;UBERON:0001893!2.11e-11!34;UBERON:0005743!2.22e-11!86;UBERON:0002616!3.72e-11!59;UBERON:0002780!5.47e-11!41;UBERON:0001890!5.47e-11!41;UBERON:0006240!5.47e-11!41;UBERON:0000956!6.16e-11!25;UBERON:0000203!6.16e-11!25;UBERON:0002791!1.15e-10!33;UBERON:0001869!1.36e-10!32;UBERON:0003080!1.51e-10!42;UBERON:0000073!1.61e-10!94;UBERON:0001016!1.61e-10!94;UBERON:0000033!2.72e-08!123;UBERON:0003075!5.69e-08!86;UBERON:0007284!5.69e-08!86;UBERON:0003134!2.33e-07!37;UBERON:0000474!2.33e-07!37;UBERON:0007023!2.33e-07!115;UBERON:0000153!2.51e-07!129;UBERON:0007811!2.51e-07!129;UBERON:0002346!3.52e-07!90;UBERON:0000992!3.52e-07!13 | |||
|ontology_enrichment_uberon_v019=UBERON:0001950;4.10e-17;20!UBERON:0000992;1.51e-15;13!UBERON:0002619;2.35e-15;22!UBERON:0000956;3.15e-13;25!UBERON:0000203;3.15e-13;25!UBERON:0003528;1.72e-12;34!UBERON:0002020;1.72e-12;34!UBERON:0002119;4.60e-12;4!UBERON:0001893;1.36e-11;34!UBERON:0001869;1.41e-11;32!UBERON:0000991;4.28e-11;21!UBERON:0003134;5.17e-11;33!UBERON:0002791;3.53e-10;32!UBERON:0000200;5.44e-10;6!UBERON:0000474;7.97e-10;37!UBERON:0001871;4.84e-09;6!UBERON:0003100;6.39e-09;41!UBERON:0002118;8.63e-09;5!UBERON:0003133;7.66e-07;44 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001950,1.97e-17,20;UBERON:0002619,1.22e-15,22;UBERON:0000992,1.56e-15,13;UBERON:0003528,2.01e-14,34;UBERON:0002020,2.01e-14,34;UBERON:0000956,1.77e-13,25;UBERON:0000203,1.77e-13,25;UBERON:0001869,1.81e-13,32;UBERON:0003134,4.40e-13,37;UBERON:0000474,4.40e-13,37;UBERON:0001893,1.73e-12,34;UBERON:0002119,5.10e-12,4;UBERON:0002791,1.12e-11,32;UBERON:0000955,1.29e-11,68;UBERON:0006238,1.29e-11,68;UBERON:0003100,1.98e-11,41;UBERON:0000991,4.16e-11,21;UBERON:0009196,4.16e-11,21;UBERON:0009117,4.16e-11,21;UBERON:0005564,4.16e-11,21;UBERON:0003133,1.06e-10,48;UBERON:0004176,1.68e-10,22;UBERON:0000073,2.36e-10,53;UBERON:0002616,2.36e-10,53;UBERON:0005156,2.93e-10,59;UBERON:0000990,2.93e-10,59;UBERON:0000200,3.51e-10,6;UBERON:0001017,5.13e-10,81;UBERON:0002780,8.16e-10,41;UBERON:0001890,8.16e-10,41;UBERON:0003080,8.16e-10,41;UBERON:0006240,8.16e-10,41;UBERON:0001049,1.39e-09,56;UBERON:0005068,1.39e-09,56;UBERON:0006241,1.39e-09,56;UBERON:0007135,1.39e-09,56;UBERON:0001016,2.08e-09,89;UBERON:0001871,3.30e-09,6;UBERON:0002118,5.81e-09,5 | |||
|phase1_expression=0.181678379270557,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34140171940727,0.255725123687061,0,0,0,0,0,0,0,0,0.589405839739707,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.760272105718513,0.732186172644509,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,0,0,0,0,0,0,0,0,0.538842688278752,0.326923806226917,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.910161361938026,1.43723628363248,0,0,0,0,0,0,0.340296549480063,0,0,0.211931901159562,0.300091096084402,0.721367704669072,0,0,0,0,0,0.0920498986422993,0,0,0.806016785821122,0.169560592310488,0,3.00020732649918,0,0,0,0,0,0,0,0,0,0,0,0,0.118306800039844,0,0,0,0,0.237270619111097,0,0,0,0,2.80483547606892,4.115740113314,0,0,0,0,0,0,0,0,1.1240175325762,0,0.0925884451585296,0,0,0,0,0,0.721832238805369,0,0.570762456703795,0,0,0,0,0,3.74935335947108,4.70349958956807,0.992425680696705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.904902010304444,0,0.845302752556,10.9034627799797,4.16029747645464,0,0,0,0.857867961948885,0,0,0,0.355391948742546,0,2.1100756394171,3.48613383440118,1.49959486773086,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.260650843404249,0,0,0,0,0,0,0,0,0,0,0,0,0.511707249066704,0,0,0.462629081407967,0.532685175939381,0.410635780069046,5.71179872101983,0.232420756919918,0,0,0,1.49258782613989,0,0.131124414959424,0,0,0,0,0,0,0,0,0,0.270946437543853,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.82051789532479,0.096670718292122,0.154048617114644,0.460511024178389,0,0.537101224341368,1.16013355131383,0.255679882248303,0.178064071293475,0,0,0,0,1.39453664789186,0,0,0,0.532306030317022,0,0,0,0,0,2.47819252100972,0,0,0,0,1.07923474549989,0.274537029736055,0,0.404364963146632,0,0.421258456238981,0.48763373908959,0,0,1.36499911407986,0.565621727814851,0,0,0,0,0.578775534266688,0,0.202910376962704,0.30982349809975,0,0,0,0.35667105148125,6.38569915327076,0,0,0,0,0,0,0,0,0.86101074534246,0,0,0,0,0,0,0,0,0,0,0,0,0,0.735120647943095,0,0,0,0,0,0,0,0,0,0,0,0,0,0.642352300414798,0,0,0,0,0,0,0,2.22724939116194,0,0,0,0,0,0,0,5.6836125981514,0,0,0,0,3.97659059106519,3.23539657744179,0.445234820091624,1.15362711958732,0,0,0,0,9.71552483770471,0,0.311039587661807,0.179736702294654,0,0,0.493217028184668,0,0,0.969332746095218,2.50473865036998,0,0,0,0,0,0,0,0,0,0,0,0.120596438625408,0,0,0,2.19385397153973,0,0,0.384751292518985,0,0,0.0897576444097721,0,0.957003479195758,4.76307485689684,0.533034776018635,0,0.470940769185074,0,0.225595660617181,0.392125068635479,0.839107934879214,0.189753732724185,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0.067401132980677,0,0.234264445725339,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.391969589657511,0,0,0,0,0,0,0,0,0,1.50746117111426,0.19871461170299,2.02594547058812,0,5.61111741760736,0,0.799238438328521,0,0,0.171594997861965,0,0,0.235694034616795,0.135904206073614,0.104602846312333,0,1.73370353940911,0,0,0,1.28929632425987,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.795229689809303,0.817220436669454,0,0,0,0,0,3.88797162611358,0.670869375198532,0.0788057072991982,0.0524545881349981,0,0,0,0,0,0,11.9459912385817,19.0128728064279,16.6559553655799,2.39460383124975,0.246277562248017,4.77086460999181,0.453248366080503,0,0,1.42211251997706,1.98348902614035,0,0.704815022316672,0,0,0,0,0,0,0,0,0,0,0,0,0,1.83039397352945,1.8778639605975,1.14681839138014,0.554645257684261,0.993542447062135,0,0.124980407962107,0,0,2.58792401667989,0,0,0,0,0,0,0,0,0,0.151230923763239,0.15543720058278,0,5.73468361789329,4.04822800947244,6.36578123192664,7.05000553329454,3.45594228925393,1.5652351854352,2.10360652596106,2.28483127301277,4.06870733204662,4.54621648006399,2.7926744831047,0,1.99047944349308,0.400027764663154,0,0,0,0.192619830407303,0,0.260994291965212,0,1.389134845943,0,0,0,0.219284049578707,4.24053950270115,0.192914038270915,0.337884881306145,0,0,0,2.07387654227596,0,0,0,0,0,0,0,0,0,0,0.184105950251841,0,0.622077260032973,0,1.1860729253635,0,0,0,0,0,0,0.318004350653419,0,0.80057074828547,0,0.6124909547064,1.54150140231503,1.41696576325585,0.638535436228605,0.82046545696302,0,1.38314504928436,1.13032951942296,0,0,0,1.65085738669511,0.115525666150338,0.381382095467167,0,0,1.0529445968896,11.6988939848042,0,0,0.655087670040387,0,1.35075169236789,0.781078098613847,1.44680757550829,1.9024743058172,0,0,0,0,0,0,0,0.606965604236632,0,1.06442844195167,0,0.171488009437418,0.815636795721981,1.51277379194553,0,0,0.078493092850514,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0.22910686854405,0.31020638566432,0,0,0,0,0,0,0,1.45713297917742,0,0,0,0,0,0,0,0,0,0.490296643507811,0,0.196308467114945,0,0.4226557275834,0.339854229375634,0,0,0,0,0,0,0,0,0.143339583151451,0,1.8357702351547,0,0,0.371995018166751,0,1.73050624849516,0,0,0,0,0,0,0,0,0,0,0.20686599172379,0,0,0,0,0.33639558774184,0,0,0,0,0,0,0,0,0,0,0,0,3.42276043712026,0,0,0,0 | |phase1_expression=0.181678379270557,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34140171940727,0.255725123687061,0,0,0,0,0,0,0,0,0.589405839739707,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.760272105718513,0.732186172644509,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,0,0,0,0,0,0,0,0,0.538842688278752,0.326923806226917,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.910161361938026,1.43723628363248,0,0,0,0,0,0,0.340296549480063,0,0,0.211931901159562,0.300091096084402,0.721367704669072,0,0,0,0,0,0.0920498986422993,0,0,0.806016785821122,0.169560592310488,0,3.00020732649918,0,0,0,0,0,0,0,0,0,0,0,0,0.118306800039844,0,0,0,0,0.237270619111097,0,0,0,0,2.80483547606892,4.115740113314,0,0,0,0,0,0,0,0,1.1240175325762,0,0.0925884451585296,0,0,0,0,0,0.721832238805369,0,0.570762456703795,0,0,0,0,0,3.74935335947108,4.70349958956807,0.992425680696705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.904902010304444,0,0.845302752556,10.9034627799797,4.16029747645464,0,0,0,0.857867961948885,0,0,0,0.355391948742546,0,2.1100756394171,3.48613383440118,1.49959486773086,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.260650843404249,0,0,0,0,0,0,0,0,0,0,0,0,0.511707249066704,0,0,0.462629081407967,0.532685175939381,0.410635780069046,5.71179872101983,0.232420756919918,0,0,0,1.49258782613989,0,0.131124414959424,0,0,0,0,0,0,0,0,0,0.270946437543853,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.82051789532479,0.096670718292122,0.154048617114644,0.460511024178389,0,0.537101224341368,1.16013355131383,0.255679882248303,0.178064071293475,0,0,0,0,1.39453664789186,0,0,0,0.532306030317022,0,0,0,0,0,2.47819252100972,0,0,0,0,1.07923474549989,0.274537029736055,0,0.404364963146632,0,0.421258456238981,0.48763373908959,0,0,1.36499911407986,0.565621727814851,0,0,0,0,0.578775534266688,0,0.202910376962704,0.30982349809975,0,0,0,0.35667105148125,6.38569915327076,0,0,0,0,0,0,0,0,0.86101074534246,0,0,0,0,0,0,0,0,0,0,0,0,0,0.735120647943095,0,0,0,0,0,0,0,0,0,0,0,0,0,0.642352300414798,0,0,0,0,0,0,0,2.22724939116194,0,0,0,0,0,0,0,5.6836125981514,0,0,0,0,3.97659059106519,3.23539657744179,0.445234820091624,1.15362711958732,0,0,0,0,9.71552483770471,0,0.311039587661807,0.179736702294654,0,0,0.493217028184668,0,0,0.969332746095218,2.50473865036998,0,0,0,0,0,0,0,0,0,0,0,0.120596438625408,0,0,0,2.19385397153973,0,0,0.384751292518985,0,0,0.0897576444097721,0,0.957003479195758,4.76307485689684,0.533034776018635,0,0.470940769185074,0,0.225595660617181,0.392125068635479,0.839107934879214,0.189753732724185,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0.067401132980677,0,0.234264445725339,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.391969589657511,0,0,0,0,0,0,0,0,0,1.50746117111426,0.19871461170299,2.02594547058812,0,5.61111741760736,0,0.799238438328521,0,0,0.171594997861965,0,0,0.235694034616795,0.135904206073614,0.104602846312333,0,1.73370353940911,0,0,0,1.28929632425987,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.795229689809303,0.817220436669454,0,0,0,0,0,3.88797162611358,0.670869375198532,0.0788057072991982,0.0524545881349981,0,0,0,0,0,0,11.9459912385817,19.0128728064279,16.6559553655799,2.39460383124975,0.246277562248017,4.77086460999181,0.453248366080503,0,0,1.42211251997706,1.98348902614035,0,0.704815022316672,0,0,0,0,0,0,0,0,0,0,0,0,0,1.83039397352945,1.8778639605975,1.14681839138014,0.554645257684261,0.993542447062135,0,0.124980407962107,0,0,2.58792401667989,0,0,0,0,0,0,0,0,0,0.151230923763239,0.15543720058278,0,5.73468361789329,4.04822800947244,6.36578123192664,7.05000553329454,3.45594228925393,1.5652351854352,2.10360652596106,2.28483127301277,4.06870733204662,4.54621648006399,2.7926744831047,0,1.99047944349308,0.400027764663154,0,0,0,0.192619830407303,0,0.260994291965212,0,1.389134845943,0,0,0,0.219284049578707,4.24053950270115,0.192914038270915,0.337884881306145,0,0,0,2.07387654227596,0,0,0,0,0,0,0,0,0,0,0.184105950251841,0,0.622077260032973,0,1.1860729253635,0,0,0,0,0,0,0.318004350653419,0,0.80057074828547,0,0.6124909547064,1.54150140231503,1.41696576325585,0.638535436228605,0.82046545696302,0,1.38314504928436,1.13032951942296,0,0,0,1.65085738669511,0.115525666150338,0.381382095467167,0,0,1.0529445968896,11.6988939848042,0,0,0.655087670040387,0,1.35075169236789,0.781078098613847,1.44680757550829,1.9024743058172,0,0,0,0,0,0,0,0.606965604236632,0,1.06442844195167,0,0.171488009437418,0.815636795721981,1.51277379194553,0,0,0.078493092850514,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0.22910686854405,0.31020638566432,0,0,0,0,0,0,0,1.45713297917742,0,0,0,0,0,0,0,0,0,0.490296643507811,0,0.196308467114945,0,0.4226557275834,0.339854229375634,0,0,0,0,0,0,0,0,0.143339583151451,0,1.8357702351547,0,0,0.371995018166751,0,1.73050624849516,0,0,0,0,0,0,0,0,0,0,0.20686599172379,0,0,0,0,0.33639558774184,0,0,0,0,0,0,0,0,0,0,0,0,3.42276043712026,0,0,0,0 | ||
|short_description=p5@GNG4 | |short_description=p5@GNG4 | ||
}} | }} |
Latest revision as of 12:44, 16 September 2015
Short description: | p5@GNG4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_GNG4_5end |
Coexpression cluster: | NA |
Association with transcript: | -73bp_to_ENST00000484517_5end |
EntrezGene: | GNG4 |
HGNC: | 4407 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 9.97e-26 | 14 |
reproductive organ cancer | 1.05e-12 | 29 |
female reproductive organ cancer | 6.77e-12 | 27 |
cell type benign neoplasm | 8.31e-10 | 3 |
leiomyoma | 8.31e-10 | 3 |
benign neoplasm | 2.03e-07 | 4 |