FFCP PHASE1:Hg19::chr2:25872736..25872782,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1838 | |EntrezGene=1838 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=3058 | |HGNC=3058 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=16bp_to_ENST00000472690_5end | |association_with_transcript=16bp_to_ENST00000472690_5end | ||
|cluster_id=chr2:25872736..25872782,- | |||
|coexpression_cluster_id=C7 | |coexpression_cluster_id=C7 | ||
|description=CAGE_peak_6_at_DTNB_5end | |description=CAGE_peak_6_at_DTNB_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0002057!2.85e-80!42;CL:0000860!2.23e-74!45;CL:0002194!1.41e-72!63;CL:0000576!1.41e-72!63;CL:0000040!1.41e-72!63;CL:0000559!1.41e-72!63;CL:0002009!4.23e-70!65;CL:0000839!1.63e-64!70;CL:0000557!1.72e-63!71;CL:0000766!9.08e-59!76;CL:0000763!2.30e-39!112;CL:0000049!2.30e-39!112;CL:0002087!1.49e-36!119;CL:0002031!1.14e-32!124;CL:0000738!1.02e-29!140;CL:0000037!5.86e-24!172;CL:0000566!5.86e-24!172;CL:0002032!8.06e-24!165;CL:0000837!8.06e-24!165;CL:0000988!3.91e-22!182;CL:0000134!2.03e-07!358;CL:0002320!4.16e-07!365 | |ontology_enrichment_celltype=CL:0002057!2.85e-80!42;CL:0000860!2.23e-74!45;CL:0002194!1.41e-72!63;CL:0000576!1.41e-72!63;CL:0000040!1.41e-72!63;CL:0000559!1.41e-72!63;CL:0002009!4.23e-70!65;CL:0000839!1.63e-64!70;CL:0000557!1.72e-63!71;CL:0000766!9.08e-59!76;CL:0000763!2.30e-39!112;CL:0000049!2.30e-39!112;CL:0002087!1.49e-36!119;CL:0002031!1.14e-32!124;CL:0000738!1.02e-29!140;CL:0000037!5.86e-24!172;CL:0000566!5.86e-24!172;CL:0002032!8.06e-24!165;CL:0000837!8.06e-24!165;CL:0000988!3.91e-22!182;CL:0000134!2.03e-07!358;CL:0002320!4.16e-07!365 | ||
|ontology_enrichment_celltype_v019=CL:0000860;1.37e-119;33!CL:0002057;1.37e-119;33!CL:0000473;2.26e-97;39!CL:0000234;2.26e-97;39!CL:0000576;9.88e-62;48!CL:0000766;3.42e-34;69!CL:0000763;2.45e-18;100!CL:0002087;9.32e-16;104!CL:0000738;3.97e-10;136!CL:0000988;4.70e-07;177 | |ontology_enrichment_celltype_v019=CL:0000860;1.37e-119;33!CL:0002057;1.37e-119;33!CL:0000473;2.26e-97;39!CL:0000234;2.26e-97;39!CL:0000576;9.88e-62;48!CL:0000766;3.42e-34;69!CL:0000763;2.45e-18;100!CL:0002087;9.32e-16;104!CL:0000738;3.97e-10;136!CL:0000988;4.70e-07;177 | ||
|ontology_enrichment_celltype_v019_2=CL:0000473,7.85e-105,48;CL:0000234,7.85e-105,48;CL:0000860,7.92e-104,42;CL:0002057,7.92e-104,42;CL:0002194,4.44e-89,59;CL:0000576,4.44e-89,59;CL:0000040,4.44e-89,59;CL:0000559,4.44e-89,59;CL:0002009,4.64e-86,61;CL:0000839,2.68e-79,66;CL:0000557,4.59e-78,67;CL:0000766,2.10e-72,72;CL:0000763,5.83e-47,108;CL:0000049,5.83e-47,108;CL:0002087,7.64e-44,115;CL:0002031,7.75e-42,120;CL:0000738,2.13e-36,136;CL:0002032,4.82e-30,161;CL:0000837,4.82e-30,161;CL:0000037,1.34e-28,168;CL:0000988,6.55e-27,177;CL:0000134,5.23e-11,354;CL:0002320,1.07e-10,361;CL:0000219,1.35e-09,386;CL:0000048,3.03e-08,427;CL:0000723,4.66e-08,433;CL:0000034,8.11e-08,441 | |||
|ontology_enrichment_development_v019=CL:0002057;5.62e-75;42!CL:0000049;5.66e-16;108!UBERON:0005425;1.06e-07;1 | |ontology_enrichment_development_v019=CL:0002057;5.62e-75;42!CL:0000049;5.66e-16;108!UBERON:0005425;1.06e-07;1 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!2.07e-55!80;UBERON:0001474!5.92e-51!86;UBERON:0002390!1.29e-46!102;UBERON:0003061!1.29e-46!102;UBERON:0004765!4.17e-42!101;UBERON:0001434!4.17e-42!101;UBERON:0002193!1.20e-41!112;UBERON:0002405!2.78e-40!115;UBERON:0003081!4.90e-22!216;UBERON:0002204!5.69e-22!167;UBERON:0000926!7.55e-08!448;UBERON:0004120!7.55e-08!448;UBERON:0006603!7.55e-08!448 | |ontology_enrichment_uberon=UBERON:0002371!2.07e-55!80;UBERON:0001474!5.92e-51!86;UBERON:0002390!1.29e-46!102;UBERON:0003061!1.29e-46!102;UBERON:0004765!4.17e-42!101;UBERON:0001434!4.17e-42!101;UBERON:0002193!1.20e-41!112;UBERON:0002405!2.78e-40!115;UBERON:0003081!4.90e-22!216;UBERON:0002204!5.69e-22!167;UBERON:0000926!7.55e-08!448;UBERON:0004120!7.55e-08!448;UBERON:0006603!7.55e-08!448 | ||
|ontology_enrichment_uberon_v019=UBERON:0000941;1.06e-07;1!UBERON:0001785;1.06e-07;1!UBERON:0002464;1.06e-07;1!UBERON:0004904;1.06e-07;1!UBERON:0001021;1.06e-07;1 | |ontology_enrichment_uberon_v019=UBERON:0000941;1.06e-07;1!UBERON:0001785;1.06e-07;1!UBERON:0002464;1.06e-07;1!UBERON:0004904;1.06e-07;1!UBERON:0001021;1.06e-07;1 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,2.09e-68,76;UBERON:0001474,3.97e-63,82;UBERON:0004765,3.59e-57,90;UBERON:0002405,3.37e-55,93;UBERON:0002390,3.55e-52,98;UBERON:0003061,3.55e-52,98;UBERON:0001434,4.74e-51,100;UBERON:0002193,5.83e-47,108;UBERON:0002204,8.46e-29,167;UBERON:0003081,7.33e-23,203;UBERON:0000926,5.39e-13,315;UBERON:0004120,5.39e-13,315;UBERON:0006603,5.39e-13,315;UBERON:0002384,2.86e-10,371;UBERON:0000941,1.06e-07,1;UBERON:0001785,1.06e-07,1;UBERON:0002464,1.06e-07,1;UBERON:0004904,1.06e-07,1;UBERON:0001021,1.06e-07,1;UBERON:0003902,1.06e-07,1;UBERON:0005425,1.06e-07,1 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.601633342410425,0.217010870715852,0.895661896959697,0,1.03030227053675,0,0.755751887377619,0.242584061187816,3.0215774797739,2.05583944010913,4.02618282163635,31.6461631554366,26.6407134790265,39.9654968511709,11.721353145045,4.51839278508678,6.77132432971709,0.376484679085209,1.91034305040492,2.24723484445085,11.0190201253525,6.73950956859797,7.67204550958849,7.91643120448119,7.97854630486527,5.96714650745772,7.54544020434318,2.26954089876456,4.9825779919646,21.1048878815664,15.644487552606,29.5376828798959,7.87019353423379,4.41933163185078,8.54448446090388,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0.348259474598534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132409180813219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.297262324577456,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.2162378064119,1.50677127429638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.320182673410333,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.309123034943167,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127612712494584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.282431402330337,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211673582723883,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19924798825107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.126373159256976,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146552233678082,0,0,0,0,0,0.106787412567695,0,0,0,0,0,0,0,0,0,0,0,0,0.122026264901963,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.42769420259154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0887023701626388,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.423387050190929,0,0,0,0,0.098150233615243,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.143339583151451,0,0.0679914901909147,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0645889098360061,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.601633342410425,0.217010870715852,0.895661896959697,0,1.03030227053675,0,0.755751887377619,0.242584061187816,3.0215774797739,2.05583944010913,4.02618282163635,31.6461631554366,26.6407134790265,39.9654968511709,11.721353145045,4.51839278508678,6.77132432971709,0.376484679085209,1.91034305040492,2.24723484445085,11.0190201253525,6.73950956859797,7.67204550958849,7.91643120448119,7.97854630486527,5.96714650745772,7.54544020434318,2.26954089876456,4.9825779919646,21.1048878815664,15.644487552606,29.5376828798959,7.87019353423379,4.41933163185078,8.54448446090388,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0.348259474598534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132409180813219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.297262324577456,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.2162378064119,1.50677127429638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.320182673410333,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.309123034943167,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127612712494584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.282431402330337,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211673582723883,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19924798825107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.126373159256976,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146552233678082,0,0,0,0,0,0.106787412567695,0,0,0,0,0,0,0,0,0,0,0,0,0.122026264901963,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.42769420259154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0887023701626388,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.423387050190929,0,0,0,0,0.098150233615243,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.143339583151451,0,0.0679914901909147,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0645889098360061,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p6@DTNB | |short_description=p6@DTNB | ||
}} | }} |
Latest revision as of 14:09, 16 September 2015
Short description: | p6@DTNB |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_DTNB_5end |
Coexpression cluster: | C7_CD14_Eosinophils_Neutrophils_Smooth_Basophils_Macrophage_Mast |
Association with transcript: | 16bp_to_ENST00000472690_5end |
EntrezGene: | DTNB |
HGNC: | 3058 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 7.85e-105 | 48 |
phagocyte | 7.85e-105 | 48 |
classical monocyte | 7.92e-104 | 42 |
CD14-positive, CD16-negative classical monocyte | 7.92e-104 | 42 |
monopoietic cell | 4.44e-89 | 59 |
monocyte | 4.44e-89 | 59 |
monoblast | 4.44e-89 | 59 |
promonocyte | 4.44e-89 | 59 |
macrophage dendritic cell progenitor | 4.64e-86 | 61 |
myeloid lineage restricted progenitor cell | 2.68e-79 | 66 |
granulocyte monocyte progenitor cell | 4.59e-78 | 67 |
myeloid leukocyte | 2.10e-72 | 72 |
myeloid cell | 5.83e-47 | 108 |
common myeloid progenitor | 5.83e-47 | 108 |
nongranular leukocyte | 7.64e-44 | 115 |
hematopoietic lineage restricted progenitor cell | 7.75e-42 | 120 |
leukocyte | 2.13e-36 | 136 |
hematopoietic oligopotent progenitor cell | 4.82e-30 | 161 |
hematopoietic multipotent progenitor cell | 4.82e-30 | 161 |
hematopoietic stem cell | 1.34e-28 | 168 |
hematopoietic cell | 6.55e-27 | 177 |
mesenchymal cell | 5.23e-11 | 354 |
connective tissue cell | 1.07e-10 | 361 |
motile cell | 1.35e-09 | 386 |
multi fate stem cell | 3.03e-08 | 427 |
somatic stem cell | 4.66e-08 | 433 |
stem cell | 8.11e-08 | 441 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 2.09e-68 | 76 |
bone element | 3.97e-63 | 82 |
skeletal element | 3.59e-57 | 90 |
immune system | 3.37e-55 | 93 |
hematopoietic system | 3.55e-52 | 98 |
blood island | 3.55e-52 | 98 |
skeletal system | 4.74e-51 | 100 |
hemolymphoid system | 5.83e-47 | 108 |
musculoskeletal system | 8.46e-29 | 167 |
lateral plate mesoderm | 7.33e-23 | 203 |
mesoderm | 5.39e-13 | 315 |
mesoderm-derived structure | 5.39e-13 | 315 |
presumptive mesoderm | 5.39e-13 | 315 |
connective tissue | 2.86e-10 | 371 |
cranial nerve II | 1.06e-07 | 1 |
cranial nerve | 1.06e-07 | 1 |
nerve trunk | 1.06e-07 | 1 |
nerve connecting eye with brain | 1.06e-07 | 1 |
nerve | 1.06e-07 | 1 |
retinal neural layer | 1.06e-07 | 1 |
presumptive neural retina | 1.06e-07 | 1 |