FFCP PHASE1:Hg19::chr13:112721490..112721504,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6656 | |EntrezGene=6656 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11189 | |HGNC=11189 | ||
|TSSclassifier=strong | |||
|UniProt=O00570 | |UniProt=O00570 | ||
|association_with_transcript=-408bp_to_ENST00000330949,NM_005986,uc001vsb.1_5end | |association_with_transcript=-408bp_to_ENST00000330949,NM_005986,uc001vsb.1_5end | ||
|cluster_id=chr13:112721490..112721504,+ | |||
|coexpression_cluster_id=C152 | |||
|description=CAGE_peak_2_at_SOX1_5end | |description=CAGE_peak_2_at_SOX1_5end | ||
|id=chr13:112721490..112721504,+ | |id=chr13:112721490..112721504,+ | ||
|ontology_enrichment_celltype=CL:0002605!3.18e-09!3;CL:0000047!7.06e-09!8;CL:0002319!1.86e-08!25 | |ontology_enrichment_celltype=CL:0002605!3.18e-09!3;CL:0000047!7.06e-09!8;CL:0002319!1.86e-08!25 | ||
|ontology_enrichment_celltype_v019=CL:0000047;1.87e-21;2!CL:0002605;4.13e-14;3!CL:0002319;4.20e-13;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0002605,2.42e-14,3;CL:0002319,3.54e-13,25;CL:0000047,4.08e-12,8 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:171;9.27e-10;10!DOID:3095;1.44e-07;22!DOID:2994;1.44e-07;22 | |||
|ontology_enrichment_disease_v019_2=DOID:171,9.01e-10,10;DOID:3095,1.44e-07,22;DOID:2994,1.44e-07,22 | |||
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|ontology_enrichment_uberon_v019=UBERON:0002346;1.60e-23;4!UBERON:0000923;1.60e-23;4!UBERON:0010316;1.60e-23;4!UBERON:0005291;1.60e-23;4!UBERON:0002050;5.96e-19;5!UBERON:0005423;5.96e-19;5!UBERON:0000956;6.10e-18;25!UBERON:0000203;6.10e-18;25!UBERON:0002791;1.62e-16;32!UBERON:0003528;1.88e-16;34!UBERON:0002020;1.88e-16;34!UBERON:0001869;8.68e-16;32!UBERON:0001893;1.01e-14;34!UBERON:0002902;3.28e-11;1!UBERON:0001874;3.28e-11;1!UBERON:0009899;3.28e-11;1!UBERON:0002619;1.10e-10;22!UBERON:0002021;7.85e-09;5!UBERON:0002780;1.77e-08;41!UBERON:0001890;1.77e-08;41!UBERON:0000922;1.81e-08;49!UBERON:0001950;9.89e-08;20!UBERON:0000073;2.14e-07;53!UBERON:0002616;2.14e-07;53!UBERON:0001017;3.17e-07;75!UBERON:0001016;7.92e-07;83 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.86e-18,81;UBERON:0002791,3.39e-18,32;UBERON:0001869,3.39e-18,32;UBERON:0000956,5.36e-18,25;UBERON:0000203,5.36e-18,25;UBERON:0003528,4.17e-17,34;UBERON:0002020,4.17e-17,34;UBERON:0001893,4.17e-17,34;UBERON:0001016,2.73e-16,89;UBERON:0002346,1.26e-14,86;UBERON:0004121,3.83e-14,171;UBERON:0000924,3.83e-14,171;UBERON:0006601,3.83e-14,171;UBERON:0002780,4.18e-14,41;UBERON:0001890,4.18e-14,41;UBERON:0003080,4.18e-14,41;UBERON:0006240,4.18e-14,41;UBERON:0001049,7.80e-13,56;UBERON:0005068,7.80e-13,56;UBERON:0006241,7.80e-13,56;UBERON:0007135,7.80e-13,56;UBERON:0002902,4.44e-11,1;UBERON:0009899,4.44e-11,1;UBERON:0001874,5.43e-11,1;UBERON:0000073,9.17e-11,53;UBERON:0002616,9.17e-11,53;UBERON:0002619,1.17e-10,22;UBERON:0000955,2.91e-10,68;UBERON:0006238,2.91e-10,68;UBERON:0003056,2.97e-09,61;UBERON:0002021,7.55e-09,5;UBERON:0003075,1.93e-08,82;UBERON:0007284,1.93e-08,82;UBERON:0010371,5.11e-08,104;UBERON:0001950,1.04e-07,20;UBERON:0011216,1.65e-07,223 | |||
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| ||
|short_description=p2@SOX1 | |short_description=p2@SOX1 | ||
}} | }} |
Latest revision as of 14:29, 16 September 2015
Short description: | p2@SOX1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_SOX1_5end |
Coexpression cluster: | C152_peripheral_neuroectodermal_neuroepithelioma_neuroblastoma_testicular_carcinoid_lung |
Association with transcript: | -408bp_to_ENST00000330949, NM_005986, uc001vsb.1_5end |
EntrezGene: | SOX1 |
HGNC: | 11189 |
UniProt: | O00570 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
astrocyte of the cerebral cortex | 2.42e-14 | 3 |
neural cell | 3.54e-13 | 25 |
neuronal stem cell | 4.08e-12 | 8 |
Ontology term | p-value | n |
---|---|---|
neuroectodermal tumor | 9.01e-10 | 10 |
germ cell and embryonal cancer | 1.44e-07 | 22 |
germ cell cancer | 1.44e-07 | 22 |