FFCP PHASE1:Hg19::chr8:17780483..17780510,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5108 | |EntrezGene=5108 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8727 | |HGNC=8727 | ||
|TSSclassifier=strong | |||
|UniProt=E7EV93,E9PGW9 | |UniProt=E7EV93,E9PGW9 | ||
|association_with_transcript=0bp_to_ENST00000517545,ENST00000517730,ENST00000518537_5end | |association_with_transcript=0bp_to_ENST00000517545,ENST00000517730,ENST00000518537_5end | ||
|cluster_id=chr8:17780483..17780510,+ | |||
|description=CAGE_peak_1_at_PCM1_5end | |description=CAGE_peak_1_at_PCM1_5end | ||
|id=chr8:17780483..17780510,+ | |id=chr8:17780483..17780510,+ | ||
|ontology_enrichment_celltype=CL:0000542!4.17e-10!53;CL:0000051!4.17e-10!53;CL:0000838!5.09e-10!52;CL:0000037!7.80e-10!172;CL:0000566!7.80e-10!172;CL:0000988!1.91e-08!182;CL:0002032!4.24e-08!165;CL:0000837!4.24e-08!165 | |ontology_enrichment_celltype=CL:0000542!4.17e-10!53;CL:0000051!4.17e-10!53;CL:0000838!5.09e-10!52;CL:0000037!7.80e-10!172;CL:0000566!7.80e-10!172;CL:0000988!1.91e-08!182;CL:0002032!4.24e-08!165;CL:0000837!4.24e-08!165 | ||
|ontology_enrichment_celltype_v019= | |ontology_enrichment_celltype_v019= | ||
|ontology_enrichment_celltype_v019_2=CL:0000037,1.77e-10,168;CL:0000542,4.17e-10,53;CL:0000051,4.17e-10,53;CL:0000838,5.09e-10,52;CL:0000988,2.33e-09,177;CL:0002032,1.13e-08,161;CL:0000837,1.13e-08,161 | |||
|ontology_enrichment_development_v019=UBERON:0006601;2.01e-08;82 | |ontology_enrichment_development_v019=UBERON:0006601;2.01e-08;82 | ||
|ontology_enrichment_disease=DOID:2531!7.38e-09!51;DOID:0060083!7.38e-09!51;DOID:1240!1.55e-08!39;DOID:8692!5.32e-08!31 | |ontology_enrichment_disease=DOID:2531!7.38e-09!51;DOID:0060083!7.38e-09!51;DOID:1240!1.55e-08!39;DOID:8692!5.32e-08!31 | ||
|ontology_enrichment_disease_v019=DOID:8692;9.18e-08;31 | |ontology_enrichment_disease_v019=DOID:8692;9.18e-08;31 | ||
|ontology_enrichment_disease_v019_2=DOID:2531,7.38e-09,51;DOID:0060083,7.38e-09,51;DOID:1240,1.55e-08,39;DOID:8692,5.32e-08,31 | |||
|ontology_enrichment_uberon=UBERON:0007023!9.76e-23!115;UBERON:0000073!4.11e-22!94;UBERON:0001016!4.11e-22!94;UBERON:0001017!2.38e-20!82;UBERON:0005743!1.15e-19!86;UBERON:0001049!2.11e-18!57;UBERON:0005068!2.11e-18!57;UBERON:0006241!2.11e-18!57;UBERON:0007135!2.11e-18!57;UBERON:0002780!1.20e-17!41;UBERON:0001890!1.20e-17!41;UBERON:0006240!1.20e-17!41;UBERON:0000955!3.00e-17!69;UBERON:0006238!3.00e-17!69;UBERON:0003080!5.76e-17!42;UBERON:0002346!3.14e-15!90;UBERON:0002616!5.11e-15!59;UBERON:0002020!3.92e-14!34;UBERON:0003528!3.92e-14!34;UBERON:0003075!4.35e-14!86;UBERON:0007284!4.35e-14!86;UBERON:0001893!5.80e-14!34;UBERON:0002791!1.20e-13!33;UBERON:0001869!2.76e-13!32;UBERON:0003056!3.01e-11!61;UBERON:0000956!5.17e-10!25;UBERON:0000203!5.17e-10!25;UBERON:0002619!1.45e-09!22;UBERON:0000924!2.15e-09!173;UBERON:0006601!2.15e-09!173;UBERON:0000153!2.63e-09!129;UBERON:0007811!2.63e-09!129;UBERON:0001950!1.40e-08!20;UBERON:0004121!1.43e-08!169;UBERON:0000033!3.21e-08!123 | |ontology_enrichment_uberon=UBERON:0007023!9.76e-23!115;UBERON:0000073!4.11e-22!94;UBERON:0001016!4.11e-22!94;UBERON:0001017!2.38e-20!82;UBERON:0005743!1.15e-19!86;UBERON:0001049!2.11e-18!57;UBERON:0005068!2.11e-18!57;UBERON:0006241!2.11e-18!57;UBERON:0007135!2.11e-18!57;UBERON:0002780!1.20e-17!41;UBERON:0001890!1.20e-17!41;UBERON:0006240!1.20e-17!41;UBERON:0000955!3.00e-17!69;UBERON:0006238!3.00e-17!69;UBERON:0003080!5.76e-17!42;UBERON:0002346!3.14e-15!90;UBERON:0002616!5.11e-15!59;UBERON:0002020!3.92e-14!34;UBERON:0003528!3.92e-14!34;UBERON:0003075!4.35e-14!86;UBERON:0007284!4.35e-14!86;UBERON:0001893!5.80e-14!34;UBERON:0002791!1.20e-13!33;UBERON:0001869!2.76e-13!32;UBERON:0003056!3.01e-11!61;UBERON:0000956!5.17e-10!25;UBERON:0000203!5.17e-10!25;UBERON:0002619!1.45e-09!22;UBERON:0000924!2.15e-09!173;UBERON:0006601!2.15e-09!173;UBERON:0000153!2.63e-09!129;UBERON:0007811!2.63e-09!129;UBERON:0001950!1.40e-08!20;UBERON:0004121!1.43e-08!169;UBERON:0000033!3.21e-08!123 | ||
|ontology_enrichment_uberon_v019=UBERON:0002780;5.92e-13;41!UBERON:0001890;5.92e-13;41!UBERON:0003528;2.47e-12;34!UBERON:0002020;2.47e-12;34!UBERON:0002791;2.90e-12;32!UBERON:0001869;3.74e-12;32!UBERON:0001893;4.38e-12;34!UBERON:0000073;5.33e-11;53!UBERON:0002616;5.33e-11;53!UBERON:0000956;5.11e-10;25!UBERON:0000203;5.11e-10;25!UBERON:0001016;1.33e-09;83!UBERON:0002619;1.46e-09;22!UBERON:0001017;7.02e-09;75!UBERON:0000955;1.11e-08;68!UBERON:0001950;1.41e-08;20!UBERON:0007023;2.50e-07;114!UBERON:0000922;6.99e-07;49 | |ontology_enrichment_uberon_v019=UBERON:0002780;5.92e-13;41!UBERON:0001890;5.92e-13;41!UBERON:0003528;2.47e-12;34!UBERON:0002020;2.47e-12;34!UBERON:0002791;2.90e-12;32!UBERON:0001869;3.74e-12;32!UBERON:0001893;4.38e-12;34!UBERON:0000073;5.33e-11;53!UBERON:0002616;5.33e-11;53!UBERON:0000956;5.11e-10;25!UBERON:0000203;5.11e-10;25!UBERON:0001016;1.33e-09;83!UBERON:0002619;1.46e-09;22!UBERON:0001017;7.02e-09;75!UBERON:0000955;1.11e-08;68!UBERON:0001950;1.41e-08;20!UBERON:0007023;2.50e-07;114!UBERON:0000922;6.99e-07;49 | ||
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| ||
|short_description=p1@PCM1 | |short_description=p1@PCM1 | ||
}} | }} |
Latest revision as of 05:41, 17 September 2015
Short description: | p1@PCM1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_PCM1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000517545, ENST00000517730, ENST00000518537_5end |
EntrezGene: | PCM1 |
HGNC: | 8727 |
UniProt: | E7EV93E9PGW9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic stem cell | 1.77e-10 | 168 |
lymphocyte | 4.17e-10 | 53 |
common lymphoid progenitor | 4.17e-10 | 53 |
lymphoid lineage restricted progenitor cell | 5.09e-10 | 52 |
hematopoietic cell | 2.33e-09 | 177 |
hematopoietic oligopotent progenitor cell | 1.13e-08 | 161 |
hematopoietic multipotent progenitor cell | 1.13e-08 | 161 |
Ontology term | p-value | n |
---|---|---|
nervous system | 2.80e-23 | 89 |
adult organism | 2.45e-22 | 114 |
central nervous system | 8.07e-21 | 81 |
neural tube | 5.61e-19 | 56 |
neural rod | 5.61e-19 | 56 |
future spinal cord | 5.61e-19 | 56 |
neural keel | 5.61e-19 | 56 |
regional part of nervous system | 8.77e-18 | 53 |
regional part of brain | 8.77e-18 | 53 |
brain | 1.02e-17 | 68 |
future brain | 1.02e-17 | 68 |
regional part of forebrain | 1.20e-17 | 41 |
forebrain | 1.20e-17 | 41 |
anterior neural tube | 1.20e-17 | 41 |
future forebrain | 1.20e-17 | 41 |
neurectoderm | 1.03e-14 | 86 |
brain grey matter | 3.92e-14 | 34 |
gray matter | 3.92e-14 | 34 |
telencephalon | 5.80e-14 | 34 |
neural plate | 1.42e-13 | 82 |
presumptive neural plate | 1.42e-13 | 82 |
regional part of telencephalon | 2.47e-13 | 32 |
cerebral hemisphere | 2.76e-13 | 32 |
pre-chordal neural plate | 4.10e-12 | 61 |
cerebral cortex | 5.17e-10 | 25 |
pallium | 5.17e-10 | 25 |
regional part of cerebral cortex | 1.45e-09 | 22 |
ectoderm-derived structure | 8.04e-09 | 171 |
ectoderm | 8.04e-09 | 171 |
presumptive ectoderm | 8.04e-09 | 171 |
organ system subdivision | 8.63e-09 | 223 |
neocortex | 1.40e-08 | 20 |
ecto-epithelium | 3.18e-07 | 104 |
Ontology term | p-value | n |
---|---|---|
hematologic cancer | 7.38e-09 | 51 |
immune system cancer | 7.38e-09 | 51 |
leukemia | 1.55e-08 | 39 |
myeloid leukemia | 5.32e-08 | 31 |