FFCP PHASE1:Hg19::chr13:37494248..37494260,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr13:37494248..37494260,- to FFCP PHASE1:Hg19::chr13:37494248..37494260,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=4093 | |EntrezGene=4093 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6774 | |HGNC=6774 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=114bp_to_ENST00000350148_5end | |||
|cluster_id=chr13:37494248..37494260,- | |||
|coexpression_cluster_id=C3369 | |||
|description=CAGE_peak_3_at_SMAD9_5end | |||
|id=chr13:37494248..37494260,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006601;2.27e-10;82 | |||
|ontology_enrichment_disease=DOID:171!9.67e-07!10 | |||
|ontology_enrichment_disease_v019=DOID:171;8.43e-10;10 | |||
|ontology_enrichment_disease_v019_2=DOID:171,5.29e-10,10 | |||
|ontology_enrichment_uberon=UBERON:0000073!1.21e-29!94;UBERON:0001016!1.21e-29!94;UBERON:0002346!2.23e-29!90;UBERON:0005743!5.54e-28!86;UBERON:0001049!2.53e-27!57;UBERON:0005068!2.53e-27!57;UBERON:0006241!2.53e-27!57;UBERON:0007135!2.53e-27!57;UBERON:0007023!4.05e-27!115;UBERON:0003075!1.35e-26!86;UBERON:0007284!1.35e-26!86;UBERON:0001017!1.16e-25!82;UBERON:0000955!3.37e-24!69;UBERON:0006238!3.37e-24!69;UBERON:0002616!4.35e-21!59;UBERON:0003080!3.24e-18!42;UBERON:0002780!7.39e-18!41;UBERON:0001890!7.39e-18!41;UBERON:0006240!7.39e-18!41;UBERON:0003056!3.09e-17!61;UBERON:0000924!4.55e-17!173;UBERON:0006601!4.55e-17!173;UBERON:0004121!3.61e-15!169;UBERON:0000475!5.02e-15!365;UBERON:0000033!9.70e-15!123;UBERON:0000153!1.55e-14!129;UBERON:0007811!1.55e-14!129;UBERON:0002020!3.02e-14!34;UBERON:0003528!3.02e-14!34;UBERON:0001893!3.44e-14!34;UBERON:0002791!1.08e-13!33;UBERON:0001869!1.05e-12!32;UBERON:0000025!1.88e-12!194;UBERON:0000956!4.17e-11!25;UBERON:0000203!4.17e-11!25;UBERON:0004111!1.31e-10!241;UBERON:0002619!1.32e-10!22;UBERON:0003076!1.76e-10!15;UBERON:0003057!1.76e-10!15;UBERON:0000468!1.99e-10!659;UBERON:0000483!3.46e-10!309;UBERON:0000119!5.92e-10!312;UBERON:0000477!1.58e-09!286;UBERON:0001950!1.83e-09!20;UBERON:0004733!3.56e-08!12;UBERON:0002028!3.56e-08!12;UBERON:0007277!3.56e-08!12;UBERON:0000481!8.36e-08!347;UBERON:0004732!3.36e-07!13;UBERON:0000922!4.87e-07!612;UBERON:0000467!7.81e-07!625;UBERON:0002298!8.87e-07!8 | |||
|ontology_enrichment_uberon_v019=UBERON:0000073;8.74e-13;53!UBERON:0002616;8.74e-13;53!UBERON:0002780;3.00e-11;41!UBERON:0001890;3.00e-11;41!UBERON:0004457;1.17e-10;9!UBERON:0000042;1.17e-10;9!UBERON:0002619;1.61e-10;22!UBERON:0001016;1.62e-10;83!UBERON:0001950;6.11e-10;20!UBERON:0003688;1.29e-09;6!UBERON:0002358;1.29e-09;6!UBERON:0003684;1.29e-09;6!UBERON:0001178;1.29e-09;6!UBERON:0002298;2.44e-09;6!UBERON:0001893;6.70e-09;34!UBERON:0000956;7.41e-09;25!UBERON:0000203;7.41e-09;25!UBERON:0001017;1.31e-08;75!UBERON:0004733;1.42e-08;12!UBERON:0002028;1.42e-08;12!UBERON:0003528;2.02e-08;34!UBERON:0002020;2.02e-08;34!UBERON:0000955;3.91e-08;68!UBERON:0004732;9.21e-08;13!UBERON:0001869;2.02e-07;32!UBERON:0002791;2.32e-07;32!UBERON:0001894;7.51e-07;7!UBERON:0002346;8.46e-07;4!UBERON:0000923;8.46e-07;4!UBERON:0010316;8.46e-07;4!UBERON:0005291;8.46e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,2.88e-25,89;UBERON:0001049,5.38e-25,56;UBERON:0005068,5.38e-25,56;UBERON:0006241,5.38e-25,56;UBERON:0007135,5.38e-25,56;UBERON:0001017,2.86e-23,81;UBERON:0002346,4.26e-23,86;UBERON:0000073,1.57e-21,53;UBERON:0002616,1.57e-21,53;UBERON:0000955,1.64e-20,68;UBERON:0006238,1.64e-20,68;UBERON:0007023,2.15e-20,114;UBERON:0003075,2.52e-19,82;UBERON:0007284,2.52e-19,82;UBERON:0002780,9.89e-15,41;UBERON:0001890,9.89e-15,41;UBERON:0003080,9.89e-15,41;UBERON:0006240,9.89e-15,41;UBERON:0010371,1.48e-13,104;UBERON:0004121,2.36e-13,171;UBERON:0000924,2.36e-13,171;UBERON:0006601,2.36e-13,171;UBERON:0010314,1.23e-12,132;UBERON:0003076,2.48e-12,15;UBERON:0003057,2.48e-12,15;UBERON:0011216,9.02e-12,223;UBERON:0003056,1.16e-11,61;UBERON:0002619,1.55e-10,22;UBERON:0003528,2.25e-10,34;UBERON:0002020,2.25e-10,34;UBERON:0001893,2.60e-10,34;UBERON:0001950,5.84e-10,20;UBERON:0003688,2.35e-09,6;UBERON:0002358,2.35e-09,6;UBERON:0003684,2.35e-09,6;UBERON:0001178,2.35e-09,6;UBERON:0002298,3.96e-09,6;UBERON:0004457,5.12e-09,12;UBERON:0000042,5.12e-09,12;UBERON:0000956,7.16e-09,25;UBERON:0000203,7.16e-09,25;UBERON:0002791,1.25e-08,32;UBERON:0004733,1.82e-08,12;UBERON:0002028,1.82e-08,12;UBERON:0007277,1.82e-08,12;UBERON:0001869,2.29e-08,32;UBERON:0004732,1.15e-07,13;UBERON:0000025,6.93e-07,192 | |||
|phase1_expression=8.90224058425727,1.92690471501885,5.3562673556469,4.00293193412522,3.12872766099101,3.48935409640147,0,0,0,0.245733936501509,0,0,0,0.123766352960047,0,0,0,0,0,0.861847406537515,0.816002764977012,0.626909442956176,0.572471974262113,0.547497700291537,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.145398238779565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.511450247374121,1.44575660953827,2.00535164254356,1.73815822752988,0,0,0.378139268656271,0,0.263504357079378,0.392937226493138,0,0,0,0,0,0,0,0,0.198762407366705,0,0,0,0.419499436209906,0.275118041940067,0,0.258416759169329,0,0,0,1.52054421143703,0.24406205754817,0.367663080345869,0,0.17859945656816,0.44905874525234,0.225222960966644,0,0,0.183201743930407,0,0,0,0.496971951695318,0,0,0.860509862246441,0.354668382198357,0,0,0,0.311211035399766,0.269421344139376,0.653847612453835,0,0,0,0,0,0,0,0,0,0,0.122834317311768,0.103325781175765,0,0,0,0,0,0.125118519871964,0,1.75591048352335,0.30648779579902,0,0.113432183160021,2.15267562826634,0.427114777637135,0,1.50045548042201,0.309157587715317,0.515281080091258,0.37223371266318,1.0126579934476,3.41029518064195,1.7670364197088,0.0920498986422993,0,2.13005755509969,2.92181084860157,1.01736355386293,0,0,0,0,0,0.116193942869518,0.207322110030741,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.4763109092493,0,0,0,0,0,0.590789906681404,0,0,0.343135620597051,0,0,0,0,0,0,1.44331342025273,0.579652024875384,0.70445216541493,0.433099343283221,0,0.190254152234598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102827492703324,0,0,0,0,0.07333828582095,0,0,0,0.26593811658487,0,0.257207374262142,0,0.532844358032199,1.28680194292333,0,0.823240336780769,0,0,0,0.301439377059586,0,0.799783929456456,0,0,0,0,1.14861935834114,0,0.868687840005475,1.43833425785268,2.32779252211864,0,0,0,0,0.76228387266739,0,3.86644406388848,0.502548796003046,0,0,0,0,0.12269149171914,0,0,0.623912584592421,0.178428988797162,0,0,0,0,0,0,0.184369168541703,0,0,0,0,0,0,0,0,0,1.73675465473144,4.45039722535381,2.80660094433074,2.56278298511402,1.02341449813341,3.21707842287215,0,0.154209693802656,0,0.328508624055237,0,0.348631135379878,0,0,0,0.34444334449382,0.182091168006717,0.262248829918848,0,0,0,0,0,0,0.340187410553031,1.72732732881711,0,0,0,0,0,0,0,0,3.07740150139667,0.984043937099117,0.976135183992909,1.44257416306811,1.00726411300178,0.990113999047056,0,0,0,0.290012154876366,0.462145851343933,0,0,0.322260734604821,0.145016693914229,0.0852266274161009,0,0,0,0,0.10115778085555,0.929691098594572,1.25924938732256,1.3940745403212,0,0,0,0,0.429374660225974,0,0,0,0,0,0,0,0,0.274537029736055,0,0,1.58510321173008,0,0.48763373908959,0,0,0,0.565621727814851,0,6.06501877900737,1.32687795048244,0,0,0,0,0,0,0.143411352204052,0.294747123039363,0,0,3.16661452946496,0,0,0,0,0,0,1.22386941009813,0,0,0,0,0,0,0,0,0,0,0,0,3.20472213382419,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223676107892416,0.166849141711909,0,0,0,0,0,0,0,0.586032717087576,0.242721043499027,0,0.284136146806413,0,0,0,0.994147647766298,3.09472716103128,0.333926115068718,0,0.211125408127993,4.18420775327246,0.552567831062295,6.2983186963569,0.20453736500431,0,0,0,0,0,1.479651084554,0,3.33410970433911,0,3.06134723934109,1.99613798001194,0,0,0.724999575434793,0.1137934482855,0.254253650292766,0,5.17115059862197,2.33283690706603,1.38899995946634,0.885741385813839,0.482385754501632,1.52581736317083,1.43753037910592,1.47773809476774,2.4132393686937,0.544692317594951,0.697118721393016,0.923403102045565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.158936578980379,0,0,0,0.216388639742091,0,0.530745387020035,0,0,0.123563938946503,0.104421949505455,4.92028270758942,0,2.10838001152805,0,0,0,0.789168805698781,1.20990716048664,0,1.95878396848313,0.300646838828985,0.518440956986236,0,0,0,0,0,0,0,0,0,0.34945333648406,0,0,0,0,1.84279131327997,0,2.71176888936639,0,0.397429223405979,1.13959432720582,0.195551382734803,0,1.06726497369676,0.39961921916426,0,1.94712213482057,0,0,0,0.707082103850386,0.271808412147228,0.209205692624666,1.12198039399954,0.866851769704557,0,3.42263447229983,0,0,0,0.837847203816763,1.83328339209347,0.717873024576814,0,0,0.223171457441873,1.47803639470798,0.720599767084807,3.49487848582361,0.630265458457789,0.576911008668165,0.337017719270924,0,0,0.795229689809303,7.21878052391351,0,0,0,0,0,1.82248669974074,0,0.945668487590378,1.57363764404994,0.316801009558219,0,0.191915197319445,0,0.662091970365432,0.25426853765475,0,0,0.653174720218818,0,0,0,0.113312091520126,0.58620893471233,0,2.32709321450791,3.17358244182456,0,0,0.854299300541557,2.20086027139532,0,0,0,0,0,0,0,0,0,0,0.886068179966986,0.854183854313742,4.256491644021,1.14681839138014,5.65738162837947,3.78788057942439,4.01211041315069,0.124980407962107,0.303298235083296,0,0,0.468334905806882,1.44921028610825,0.149254802886874,0,0,0,0.251567901752575,0,0,0,0.310874401165561,0,0,0,0,0,0,0,0.150257608997218,0,0,0,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| ||
|short_description=p3@SMAD9 | |||
}} | }} |
Latest revision as of 06:18, 17 September 2015
Short description: | p3@SMAD9 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_SMAD9_5end |
Coexpression cluster: | C3369_peripheral_thyroid_medulloblastoma_argyrophil_neuroblastoma_Adipocyte_neuroectodermal |
Association with transcript: | 114bp_to_ENST00000350148_5end |
EntrezGene: | SMAD9 |
HGNC: | 6774 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuroectodermal tumor | 5.29e-10 | 10 |