FFCP PHASE1:Hg19::chr8:19615402..19615427,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr8:19615402..19615427,-
|short_description=p3@CSGALNACT1
|description=CAGE_peak_3_at_CSGALNACT1_5end
|association_with_transcript=-20bp_to_ENST00000544602,uc0...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=55790 | |EntrezGene=55790 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=24290 | |HGNC=24290 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-20bp_to_ENST00000544602,uc011kyp.1_5end | |||
|cluster_id=chr8:19615402..19615427,- | |||
|description=CAGE_peak_3_at_CSGALNACT1_5end | |||
|id=chr8:19615402..19615427,- | |||
|ontology_enrichment_celltype=CL:0000115!3.03e-09!35;CL:0002087!1.16e-08!119;CL:0002139!2.66e-08!24;CL:0000738!5.12e-08!140 | |||
|ontology_enrichment_celltype_v019=CL:0002139;1.79e-07;24!CL:0000115;4.07e-07;36 | |||
|ontology_enrichment_celltype_v019_2=CL:0000115,2.59e-08,36;CL:0002139,1.99e-07,24;CL:0000791,9.27e-07,18;CL:0000789,9.27e-07,18;CL:0002420,9.27e-07,18;CL:0002419,9.27e-07,18;CL:0000790,9.27e-07,18 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!2.27e-29!115;UBERON:0000477!2.43e-15!286;UBERON:0001049!1.48e-13!57;UBERON:0005068!1.48e-13!57;UBERON:0006241!1.48e-13!57;UBERON:0007135!1.48e-13!57;UBERON:0003080!1.19e-12!42;UBERON:0002780!2.03e-12!41;UBERON:0001890!2.03e-12!41;UBERON:0006240!2.03e-12!41;UBERON:0004111!4.26e-12!241;UBERON:0000025!2.56e-11!194;UBERON:0002616!3.01e-11!59;UBERON:0001893!1.15e-10!34;UBERON:0002020!1.21e-10!34;UBERON:0003528!1.21e-10!34;UBERON:0002791!2.40e-10!33;UBERON:0000955!6.38e-10!69;UBERON:0006238!6.38e-10!69;UBERON:0001869!1.12e-09!32;UBERON:0002619!7.28e-09!22;UBERON:0001017!8.84e-09!82;UBERON:0001009!3.96e-08!113;UBERON:0003081!6.09e-08!216;UBERON:0001950!6.81e-08!20;UBERON:0005743!7.11e-08!86;UBERON:0004535!1.45e-07!110;UBERON:0000956!2.60e-07!25;UBERON:0000203!2.60e-07!25;UBERON:0000178!3.25e-07!15;UBERON:0000179!3.25e-07!15;UBERON:0000463!3.25e-07!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;1.20e-10;41!UBERON:0001890;1.20e-10;41!UBERON:0002619;2.39e-10;22!UBERON:0003528;2.48e-10;34!UBERON:0002020;2.48e-10;34!UBERON:0001893;3.01e-10;34!UBERON:0002791;4.58e-10;32!UBERON:0001869;7.79e-10;32!UBERON:0001950;2.91e-09;20!UBERON:0000073;4.76e-09;53!UBERON:0002616;4.76e-09;53!UBERON:0000178;1.15e-08;15!UBERON:0000179;1.15e-08;15!UBERON:0000463;1.15e-08;15!UBERON:0007023;2.47e-08;114!UBERON:0000956;3.36e-08;25!UBERON:0000203;3.36e-08;25 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,3.47e-32,114;UBERON:0001049,5.33e-16,56;UBERON:0005068,5.33e-16,56;UBERON:0006241,5.33e-16,56;UBERON:0007135,5.33e-16,56;UBERON:0000073,8.50e-15,53;UBERON:0002616,8.50e-15,53;UBERON:0002780,1.39e-14,41;UBERON:0001890,1.39e-14,41;UBERON:0003080,1.39e-14,41;UBERON:0006240,1.39e-14,41;UBERON:0001893,1.81e-12,34;UBERON:0003528,1.91e-12,34;UBERON:0002020,1.91e-12,34;UBERON:0002791,1.52e-11,32;UBERON:0001869,2.78e-11,32;UBERON:0002619,1.24e-10,22;UBERON:0004111,1.81e-10,240;UBERON:0000025,5.66e-10,192;UBERON:0000955,8.55e-10,68;UBERON:0006238,8.55e-10,68;UBERON:0001950,1.86e-09,20;UBERON:0001017,7.33e-09,81;UBERON:0000178,1.13e-08,15;UBERON:0000179,1.13e-08,15;UBERON:0000463,1.13e-08,15;UBERON:0003075,1.26e-08,82;UBERON:0007284,1.26e-08,82;UBERON:0000956,1.95e-08,25;UBERON:0000203,1.95e-08,25;UBERON:0002346,1.68e-07,86;UBERON:0001016,5.32e-07,89;UBERON:0003056,6.91e-07,61 | |||
|phase1_expression=0,0,0.563817616383885,0,0,1.74467704820074,0,0,0,0.245733936501509,0.697801167972428,0.218441372130172,0.263766978228454,5.44571953024205,2.98257638155124,0,0.602694528023977,0,0.487932798790507,0,0,0,0.286235987131057,0,0.125542639594803,0.0764134057479513,0.164201178899891,0.472264687882075,1.18009283054671,1.15148819429164,1.39334510984468,0,0,0,0,0,0.293600439334847,3.32397245119126,2.20598892217156,2.38711957787437,6.04571780447796,0.971680998056939,10.0454471377333,1.89017710413434,1.13362783106643,1.69808842831471,2.32429036905685,1.23350366406548,3.40677007984614,2.8769239232215,0,1.41889337933151,1.72372840368309,1.93645405075148,1.35426486594342,1.88242339542605,0.545812300115692,1.79778787556068,3.36692281607993,1.92557416245656,0.639337125799041,1.31940520074686,0.797854630486527,2.55734850319616,0.870627715885752,1.13477044938228,2.4912889959823,1.25624332628372,1.0429658368404,3.69221035998698,1.81619850790011,1.10483290796269,2.21523671208619,0.422510572623884,0.212604299965044,0.209658645508376,4.38081661471331,4.6554836780867,0.16072558669708,0.285012743741249,0.39783335439818,0.182664153764634,7.03984977845291,4.36910889009705,3.55803701545422,3.41384178053206,3.60356388332411,5.74752439954483,5.94940385506376,2.86216126360609,5.12291672198504,16.4426413023863,6.49864487812889,0,2.24203425192614,0.790152254325231,16.3269109194481,7.46720449223413,6.5792479679843,0,4.56291173287027,3.78758244587787,1.94826728407911,1.89397776704795,3.53527088969805,9.74749136167933,4.87446954777028,0.640456598628376,0.520237390239513,0.822189523018381,0.276350017785848,0.579606171470105,23.4292769796055,24.3462153561639,28.2245914273437,0.226618685395132,4.59864592322305,7.55980380061786,6.57851199250707,4.77848121486145,3.90650072313851,0,5.27012916772205,4.35154477925022,8.74515085866421,4.49876778883632,3.28451198768419,2.82249440514625,0.534880391567015,3.33096128930438,2.43806866313962,1.34140171940727,0.383587685530591,2.1686349143074,1.50401373190767,3.33146993609895,0.795285947051099,5.35298357332899,0,0,0,1.96468613246569,0,0,0.324547393654683,0.174129737299267,0.132957960518865,0.953962497221368,1.14398982156026,1.11437250398869,3.37896092523399,2.58070378531837,2.08284300964557,0.56530794192401,0.419499436209906,4.12677062910101,0.208994966536811,8.0109195342492,14.2306505074684,17.7401924765275,4.83395180530976,3.80136052859256,7.80998584154142,5.14728312484216,0.81014194788176,10.2694687526692,6.06229306090659,5.85579698513276,3.06633274931766,4.74632829784064,4.58004359826018,11.8602375692457,7.75560528296651,0,0,0.633152558322899,0.264818361626438,2.0078563452417,0.354668382198357,0.560677600142307,0,0,0.933633106199299,2.42479209725439,0.980771418680752,0.151357427644931,0,0,0,0.570471821544449,0,0,0,0,4.69554593886255,0.491337269247072,2.37649296704261,9.50402285825643,6.18167323196392,0,0,0.336672227908132,1.00094815897571,2.49357703935765,1.75591048352335,0.30648779579902,7.51190294532984,0.226864366320042,0.358779271377724,0.640672166455702,0.211931901159562,0,0,0,0,0.168776332241266,0,0,0.0920498986422993,1.2931684545505,0,0.10075209822764,0.339121184620975,0,0,0,0.121973706129595,0,0,0.10366105501537,0,0,0,0.643240938192885,0,0,0,4.73227200159376,4.88895601226495,5.54325368732009,3.41911315470421,6.10062443458737,3.08451804844426,2.69662616320329,4.31687223275761,2.30848294167834,13.2867981832437,1.40241773803446,0.4115740113314,2.94017422771084,0,0,1.18157981336281,0,0.737930631258681,0,0,0,0,0,0,0,0,0,0,0.721832238805369,2.77791307545966,5.13686211033415,0,0,0,0,0.297262324577456,0,0,0,0,0,0,0,0,0.207328115540772,0,0,0.253991577168676,0.381988425558278,1.17217447210047,0,0.616964956219941,0,1.14330573052231,0,0,0.07333828582095,0,0,0.845302752556,0,0,0,0,0,0.857867961948885,1.62786481617433,3.29296134712308,0.65147236858747,0.710783897485092,9.50342247520115,0,0,0.199945982364114,0,0,0,0,1.14861935834114,0,0,0,0,0,4.3346767244424,3.23441362289276,5.26206448746968,2.28685161800217,1.30139853857622,0,0.167516265334349,0,8.98808428736619,11.966458368161,9.11714129559278,4.53958519360818,0,0.271265023699736,0.415941723061614,0.178428988797162,0,1.05427273493442,0,0,1.03473071292505,0,0.184369168541703,0,0.391602314925481,0,4.54889657470352,8.41285383192606,4.16237475433433,0.303127571446259,3.32870879020994,1.81434175997808,0,0.61384789315225,0,0.256278298511402,0,0.965123526861645,2.96836132889982,0,0,0,2.07701771673448,0,0.725156697549733,0,0,0.229628896329213,0.182091168006717,0.262248829918848,0,0,0,0,0.105551628892876,3.4120015221269,1.36074964221213,4.75015015424707,3.08454505380579,0,0,1.27438136522519,0,0,0,0.261435451024901,0,0,0,1.54561517471583,0,0.082509499920588,0,0,1.6068392984416,0,0,0,0,0.107420244868274,0,0.170453254832202,0,0,0,0,0,2.78907329578371,2.20368642781448,4.1822236209636,1.23213432070436,0,3.47973196830029,1.11194531462352,0.143124886741991,0.372158369359667,0.316379424718726,0.953150969619124,0.255897791311334,0.42793898803392,0.95460974377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|phase1_expression=0,0,0.563817616383885,0,0,1.74467704820074,0,0,0,0.245733936501509,0.697801167972428,0.218441372130172,0.263766978228454,5.44571953024205,2.98257638155124,0,0.602694528023977,0,0.487932798790507,0,0,0,0.286235987131057,0,0.125542639594803,0.0764134057479513,0.164201178899891,0.472264687882075,1.18009283054671,1.15148819429164,1.39334510984468,0,0,0,0,0,0.293600439334847,3.32397245119126,2.20598892217156,2.38711957787437,6.04571780447796,0.971680998056939,10.0454471377333,1.89017710413434,1.13362783106643,1.69808842831471,2.32429036905685,1.23350366406548,3.40677007984614,2.8769239232215,0,1.41889337933151,1.72372840368309,1.93645405075148,1.35426486594342,1.88242339542605,0.545812300115692,1.79778787556068,3.36692281607993,1.92557416245656,0.639337125799041,1.31940520074686,0.797854630486527,2.55734850319616,0.870627715885752,1.13477044938228,2.4912889959823,1.25624332628372,1.0429658368404,3.69221035998698,1.81619850790011,1.10483290796269,2.21523671208619,0.422510572623884,0.212604299965044,0.209658645508376,4.38081661471331,4.6554836780867,0.16072558669708,0.285012743741249,0.39783335439818,0.182664153764634,7.03984977845291,4.36910889009705,3.55803701545422,3.41384178053206,3.60356388332411,5.74752439954483,5.94940385506376,2.86216126360609,5.12291672198504,16.4426413023863,6.49864487812889,0,2.24203425192614,0.790152254325231,16.3269109194481,7.46720449223413,6.5792479679843,0,4.56291173287027,3.78758244587787,1.94826728407911,1.89397776704795,3.53527088969805,9.74749136167933,4.87446954777028,0.640456598628376,0.520237390239513,0.822189523018381,0.276350017785848,0.579606171470105,23.4292769796055,24.3462153561639,28.2245914273437,0.226618685395132,4.59864592322305,7.55980380061786,6.57851199250707,4.77848121486145,3.90650072313851,0,5.27012916772205,4.35154477925022,8.74515085866421,4.49876778883632,3.28451198768419,2.82249440514625,0.534880391567015,3.33096128930438,2.43806866313962,1.34140171940727,0.383587685530591,2.1686349143074,1.50401373190767,3.33146993609895,0.795285947051099,5.35298357332899,0,0,0,1.96468613246569,0,0,0.324547393654683,0.174129737299267,0.132957960518865,0.953962497221368,1.14398982156026,1.11437250398869,3.37896092523399,2.58070378531837,2.08284300964557,0.56530794192401,0.419499436209906,4.12677062910101,0.208994966536811,8.0109195342492,14.2306505074684,17.7401924765275,4.83395180530976,3.80136052859256,7.80998584154142,5.14728312484216,0.81014194788176,10.2694687526692,6.06229306090659,5.85579698513276,3.06633274931766,4.74632829784064,4.58004359826018,11.8602375692457,7.75560528296651,0,0,0.633152558322899,0.264818361626438,2.0078563452417,0.354668382198357,0.560677600142307,0,0,0.933633106199299,2.42479209725439,0.980771418680752,0.151357427644931,0,0,0,0.570471821544449,0,0,0,0,4.69554593886255,0.491337269247072,2.37649296704261,9.50402285825643,6.18167323196392,0,0,0.336672227908132,1.00094815897571,2.49357703935765,1.75591048352335,0.30648779579902,7.51190294532984,0.226864366320042,0.358779271377724,0.640672166455702,0.211931901159562,0,0,0,0,0.168776332241266,0,0,0.0920498986422993,1.2931684545505,0,0.10075209822764,0.339121184620975,0,0,0,0.121973706129595,0,0,0.10366105501537,0,0,0,0.643240938192885,0,0,0,4.73227200159376,4.88895601226495,5.54325368732009,3.41911315470421,6.10062443458737,3.08451804844426,2.69662616320329,4.31687223275761,2.30848294167834,13.2867981832437,1.40241773803446,0.4115740113314,2.94017422771084,0,0,1.18157981336281,0,0.737930631258681,0,0,0,0,0,0,0,0,0,0,0.721832238805369,2.77791307545966,5.13686211033415,0,0,0,0,0.297262324577456,0,0,0,0,0,0,0,0,0.207328115540772,0,0,0.253991577168676,0.381988425558278,1.17217447210047,0,0.616964956219941,0,1.14330573052231,0,0,0.07333828582095,0,0,0.845302752556,0,0,0,0,0,0.857867961948885,1.62786481617433,3.29296134712308,0.65147236858747,0.710783897485092,9.50342247520115,0,0,0.199945982364114,0,0,0,0,1.14861935834114,0,0,0,0,0,4.3346767244424,3.23441362289276,5.26206448746968,2.28685161800217,1.30139853857622,0,0.167516265334349,0,8.98808428736619,11.966458368161,9.11714129559278,4.53958519360818,0,0.271265023699736,0.415941723061614,0.178428988797162,0,1.05427273493442,0,0,1.03473071292505,0,0.184369168541703,0,0.391602314925481,0,4.54889657470352,8.41285383192606,4.16237475433433,0.303127571446259,3.32870879020994,1.81434175997808,0,0.61384789315225,0,0.256278298511402,0,0.965123526861645,2.96836132889982,0,0,0,2.07701771673448,0,0.725156697549733,0,0,0.229628896329213,0.182091168006717,0.262248829918848,0,0,0,0,0.105551628892876,3.4120015221269,1.36074964221213,4.75015015424707,3.08454505380579,0,0,1.27438136522519,0,0,0,0.261435451024901,0,0,0,1.54561517471583,0,0.082509499920588,0,0,1.6068392984416,0,0,0,0,0.107420244868274,0,0.170453254832202,0,0,0,0,0,2.78907329578371,2.20368642781448,4.1822236209636,1.23213432070436,0,3.47973196830029,1.11194531462352,0.143124886741991,0.372158369359667,0.316379424718726,0.953150969619124,0.255897791311334,0.42793898803392,0.95460974377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| ||
|short_description=p3@CSGALNACT1 | |||
}} | }} |
Latest revision as of 07:43, 17 September 2015
Short description: | p3@CSGALNACT1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_CSGALNACT1_5end |
Coexpression cluster: | NA |
Association with transcript: | -20bp_to_ENST00000544602, uc011kyp.1_5end |
EntrezGene: | CSGALNACT1 |
HGNC: | 24290 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell | 2.59e-08 | 36 |
endothelial cell of vascular tree | 1.99e-07 | 24 |
mature alpha-beta T cell | 9.27e-07 | 18 |
alpha-beta T cell | 9.27e-07 | 18 |
immature T cell | 9.27e-07 | 18 |
mature T cell | 9.27e-07 | 18 |
immature alpha-beta T cell | 9.27e-07 | 18 |
Ontology term | p-value | n |
---|---|---|
adult organism | 3.47e-32 | 114 |
neural tube | 5.33e-16 | 56 |
neural rod | 5.33e-16 | 56 |
future spinal cord | 5.33e-16 | 56 |
neural keel | 5.33e-16 | 56 |
regional part of nervous system | 8.50e-15 | 53 |
regional part of brain | 8.50e-15 | 53 |
regional part of forebrain | 1.39e-14 | 41 |
forebrain | 1.39e-14 | 41 |
anterior neural tube | 1.39e-14 | 41 |
future forebrain | 1.39e-14 | 41 |
telencephalon | 1.81e-12 | 34 |
brain grey matter | 1.91e-12 | 34 |
gray matter | 1.91e-12 | 34 |
regional part of telencephalon | 1.52e-11 | 32 |
cerebral hemisphere | 2.78e-11 | 32 |
regional part of cerebral cortex | 1.24e-10 | 22 |
anatomical conduit | 1.81e-10 | 240 |
tube | 5.66e-10 | 192 |
brain | 8.55e-10 | 68 |
future brain | 8.55e-10 | 68 |
neocortex | 1.86e-09 | 20 |
central nervous system | 7.33e-09 | 81 |
blood | 1.13e-08 | 15 |
haemolymphatic fluid | 1.13e-08 | 15 |
organism substance | 1.13e-08 | 15 |
neural plate | 1.26e-08 | 82 |
presumptive neural plate | 1.26e-08 | 82 |
cerebral cortex | 1.95e-08 | 25 |
pallium | 1.95e-08 | 25 |
neurectoderm | 1.68e-07 | 86 |
nervous system | 5.32e-07 | 89 |
pre-chordal neural plate | 6.91e-07 | 61 |