FFCP PHASE1:Hg19::chr1:27961629..27961665,-: Difference between revisions
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(Created page with "{{FFCP
|id=chr1:27961629..27961665,-
|short_description=p1@FGR
|description=CAGE_peak_1_at_FGR_5end
|association_with_transcript=0bp_to_ENST00000475472_5end
|EntrezGene=2...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=2268 | |EntrezGene=2268 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=3697 | |HGNC=3697 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000475472_5end | |||
|cluster_id=chr1:27961629..27961665,- | |||
|coexpression_cluster_id=C26 | |||
|description=CAGE_peak_1_at_FGR_5end | |||
|id=chr1:27961629..27961665,- | |||
|ontology_enrichment_celltype=CL:0000738!4.48e-50!140;CL:0000766!3.69e-48!76;CL:0000037!9.80e-45!172;CL:0000566!9.80e-45!172;CL:0000557!4.32e-43!71;CL:0002031!5.69e-43!124;CL:0002032!7.05e-42!165;CL:0000837!7.05e-42!165;CL:0000839!3.29e-41!70;CL:0000988!9.81e-41!182;CL:0002087!8.99e-40!119;CL:0002009!2.01e-39!65;CL:0002194!4.11e-38!63;CL:0000576!4.11e-38!63;CL:0000040!4.11e-38!63;CL:0000559!4.11e-38!63;CL:0000763!6.86e-38!112;CL:0000049!6.86e-38!112;CL:0002057!7.47e-36!42;CL:0000860!6.25e-32!45;CL:0002393!8.24e-09!9;CL:0002397!8.24e-09!9;CL:0000094!4.26e-08!8;CL:0000134!8.14e-08!358;CL:0002320!3.52e-07!365 | |||
|ontology_enrichment_celltype_v019=CL:0000860;2.63e-30;33!CL:0002057;2.63e-30;33!CL:0000473;2.33e-29;39!CL:0000234;2.33e-29;39!CL:0000576;4.80e-28;48!CL:0000766;2.20e-25;69!CL:0000738;1.16e-13;136!CL:0002087;3.58e-13;104!CL:0000763;3.77e-12;100!CL:0000094;2.72e-09;8!CL:0000988;1.18e-07;177!CL:0002393;1.91e-07;6!CL:0002397;1.91e-07;6!CL:0000236;3.85e-07;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,2.84e-61,72;CL:0000738,6.44e-59,136;CL:0000557,3.97e-55,67;CL:0000839,1.01e-51,66;CL:0002009,8.37e-51,61;CL:0002031,2.99e-49,120;CL:0002194,3.00e-49,59;CL:0000576,3.00e-49,59;CL:0000040,3.00e-49,59;CL:0000559,3.00e-49,59;CL:0000473,5.40e-47,48;CL:0000234,5.40e-47,48;CL:0000037,1.43e-46,168;CL:0002087,2.21e-46,115;CL:0002032,5.65e-44,161;CL:0000837,5.65e-44,161;CL:0000860,4.03e-42,42;CL:0002057,4.03e-42,42;CL:0000988,4.90e-42,177;CL:0000763,7.68e-42,108;CL:0000049,7.68e-42,108;CL:0002393,3.97e-10,9;CL:0002397,3.97e-10,9;CL:0000094,2.75e-09,8;CL:0000134,3.49e-07,354 | |||
|ontology_enrichment_development_v019=CL:0002057;2.90e-30;42!CL:0000049;1.67e-11;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!2.45e-42!102;UBERON:0003061!2.45e-42!102;UBERON:0007023!9.13e-42!115;UBERON:0002193!3.69e-39!112;UBERON:0002371!1.94e-36!80;UBERON:0001474!1.13e-31!86;UBERON:0002405!2.18e-26!115;UBERON:0004765!4.94e-26!101;UBERON:0001434!4.94e-26!101;UBERON:0003081!4.64e-14!216;UBERON:0001049!3.32e-12!57;UBERON:0005068!3.32e-12!57;UBERON:0006241!3.32e-12!57;UBERON:0007135!3.32e-12!57;UBERON:0000479!3.03e-10!787;UBERON:0002204!2.04e-09!167;UBERON:0003080!3.36e-09!42;UBERON:0002616!5.48e-09!59;UBERON:0002780!8.68e-09!41;UBERON:0001890!8.68e-09!41;UBERON:0006240!8.68e-09!41;UBERON:0002020!2.15e-07!34;UBERON:0003528!2.15e-07!34;UBERON:0001893!4.06e-07!34;UBERON:0000178!4.95e-07!15;UBERON:0000179!4.95e-07!15;UBERON:0000463!4.95e-07!15;UBERON:0003075!5.25e-07!86;UBERON:0007284!5.25e-07!86;UBERON:0002791!6.51e-07!33 | |||
|ontology_enrichment_uberon_v019=UBERON:0007023;2.63e-10;114!UBERON:0000178;2.15e-08;15!UBERON:0000179;2.15e-08;15!UBERON:0000463;2.15e-08;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,8.57e-53,98;UBERON:0003061,8.57e-53,98;UBERON:0002193,1.24e-47,108;UBERON:0002371,2.97e-45,76;UBERON:0007023,4.16e-41,114;UBERON:0001474,6.50e-40,82;UBERON:0002405,1.27e-39,93;UBERON:0004765,5.93e-34,90;UBERON:0001434,7.19e-29,100;UBERON:0003081,1.38e-20,203;UBERON:0002204,4.89e-11,167;UBERON:0000479,1.23e-10,773;UBERON:0001049,1.47e-09,56;UBERON:0005068,1.47e-09,56;UBERON:0006241,1.47e-09,56;UBERON:0007135,1.47e-09,56;UBERON:0000926,1.47e-08,315;UBERON:0004120,1.47e-08,315;UBERON:0006603,1.47e-08,315;UBERON:0000178,2.17e-08,15;UBERON:0000179,2.17e-08,15;UBERON:0000463,2.17e-08,15;UBERON:0000073,2.32e-08,53;UBERON:0002616,2.32e-08,53;UBERON:0003528,4.06e-07,34;UBERON:0002020,4.06e-07,34;UBERON:0002780,4.16e-07,41;UBERON:0001890,4.16e-07,41;UBERON:0003080,4.16e-07,41;UBERON:0006240,4.16e-07,41;UBERON:0001893,7.96e-07,34 | |||
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| ||
|short_description=p1@FGR | |||
}} | }} |
Latest revision as of 08:41, 17 September 2015
Short description: | p1@FGR |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_FGR_5end |
Coexpression cluster: | C26_Eosinophils_Neutrophils_CD14_CD14CD16_Basophils_Monocytederived_Whole |
Association with transcript: | 0bp_to_ENST00000475472_5end |
EntrezGene: | FGR |
HGNC: | 3697 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 2.84e-61 | 72 |
leukocyte | 6.44e-59 | 136 |
granulocyte monocyte progenitor cell | 3.97e-55 | 67 |
myeloid lineage restricted progenitor cell | 1.01e-51 | 66 |
macrophage dendritic cell progenitor | 8.37e-51 | 61 |
hematopoietic lineage restricted progenitor cell | 2.99e-49 | 120 |
monopoietic cell | 3.00e-49 | 59 |
monocyte | 3.00e-49 | 59 |
monoblast | 3.00e-49 | 59 |
promonocyte | 3.00e-49 | 59 |
defensive cell | 5.40e-47 | 48 |
phagocyte | 5.40e-47 | 48 |
hematopoietic stem cell | 1.43e-46 | 168 |
nongranular leukocyte | 2.21e-46 | 115 |
hematopoietic oligopotent progenitor cell | 5.65e-44 | 161 |
hematopoietic multipotent progenitor cell | 5.65e-44 | 161 |
classical monocyte | 4.03e-42 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.03e-42 | 42 |
hematopoietic cell | 4.90e-42 | 177 |
myeloid cell | 7.68e-42 | 108 |
common myeloid progenitor | 7.68e-42 | 108 |
intermediate monocyte | 3.97e-10 | 9 |
CD14-positive, CD16-positive monocyte | 3.97e-10 | 9 |
granulocyte | 2.75e-09 | 8 |
mesenchymal cell | 3.49e-07 | 354 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 8.57e-53 | 98 |
blood island | 8.57e-53 | 98 |
hemolymphoid system | 1.24e-47 | 108 |
bone marrow | 2.97e-45 | 76 |
adult organism | 4.16e-41 | 114 |
bone element | 6.50e-40 | 82 |
immune system | 1.27e-39 | 93 |
skeletal element | 5.93e-34 | 90 |
skeletal system | 7.19e-29 | 100 |
lateral plate mesoderm | 1.38e-20 | 203 |
musculoskeletal system | 4.89e-11 | 167 |
tissue | 1.23e-10 | 773 |
neural tube | 1.47e-09 | 56 |
neural rod | 1.47e-09 | 56 |
future spinal cord | 1.47e-09 | 56 |
neural keel | 1.47e-09 | 56 |
mesoderm | 1.47e-08 | 315 |
mesoderm-derived structure | 1.47e-08 | 315 |
presumptive mesoderm | 1.47e-08 | 315 |
blood | 2.17e-08 | 15 |
haemolymphatic fluid | 2.17e-08 | 15 |
organism substance | 2.17e-08 | 15 |
regional part of nervous system | 2.32e-08 | 53 |
regional part of brain | 2.32e-08 | 53 |
brain grey matter | 4.06e-07 | 34 |
gray matter | 4.06e-07 | 34 |
regional part of forebrain | 4.16e-07 | 41 |
forebrain | 4.16e-07 | 41 |
anterior neural tube | 4.16e-07 | 41 |
future forebrain | 4.16e-07 | 41 |
telencephalon | 7.96e-07 | 34 |