FFCP PHASE1:Hg19::chr20:60942361..60942376,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr20:60942361..60942376,- to FFCP PHASE1:Hg19::chr20:60942361..60942376,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=3911 | |EntrezGene=3911 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6485 | |HGNC=6485 | ||
|TSSclassifier=strong | |||
|UniProt=O15230 | |UniProt=O15230 | ||
|association_with_transcript=0bp_to_ENST00000252999,NM_005560,uc002ycq.2_5end | |||
|cluster_id=chr20:60942361..60942376,- | |||
|description=CAGE_peak_1_at_LAMA5_5end | |||
|id=chr20:60942361..60942376,- | |||
|ontology_enrichment_celltype=CL:0000066!7.53e-50!254;CL:0000223!3.32e-18!59;CL:0002321!1.32e-17!248;CL:0000220!2.73e-17!246;CL:0002076!3.47e-15!43;CL:0000076!2.14e-13!62;CL:0002251!1.85e-08!21;CL:1000449!6.04e-08!16;CL:1000497!6.99e-08!18;CL:0002518!6.99e-08!18;CL:1000507!8.75e-07!12;CL:1000494!8.75e-07!12 | |||
|ontology_enrichment_celltype_v019=CL:0002076;3.79e-12;42!CL:0002251;5.89e-09;20!CL:1000449;3.01e-08;15!CL:1000497;3.79e-08;17!CL:0002518;3.79e-08;17!CL:0000076;8.06e-07;63!CL:0002681;9.59e-07;12!CL:0002584;9.59e-07;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,3.48e-50,253;CL:0000223,1.07e-18,58;CL:0002321,5.52e-18,250;CL:0002076,1.05e-15,42;CL:0000076,3.43e-13,63;CL:0002251,5.66e-09,20;CL:1000449,2.99e-08,15;CL:1000497,3.83e-08,17;CL:0002518,3.83e-08,17;CL:0000213,5.47e-07,58;CL:0000215,5.47e-07,58;CL:0002681,9.48e-07,12;CL:0002584,9.48e-07,12 | |||
|ontology_enrichment_development_v019=CL:0000223;4.25e-10;58 | |||
|ontology_enrichment_disease=DOID:305!1.23e-23!106;DOID:0050687!3.66e-20!143;DOID:299!5.57e-08!25;DOID:1749!2.39e-07!14;DOID:162!5.22e-07!235 | |||
|ontology_enrichment_disease_v019=DOID:299;5.21e-08;25!DOID:1749;2.08e-07;14!DOID:305;2.69e-07;106 | |||
|ontology_enrichment_disease_v019_2=DOID:305,9.08e-24,106;DOID:0050687,3.02e-20,143;DOID:299,5.10e-08,25;DOID:1749,2.21e-07,14;DOID:162,5.37e-07,235 | |||
|ontology_enrichment_uberon=UBERON:0000481!3.62e-29!347;UBERON:0004119!8.03e-26!169;UBERON:0000925!8.03e-26!169;UBERON:0006595!8.03e-26!169;UBERON:0001007!1.11e-22!155;UBERON:0001555!1.11e-22!155;UBERON:0007026!1.11e-22!155;UBERON:0005177!9.29e-22!107;UBERON:0003104!1.55e-20!238;UBERON:0009142!1.55e-20!238;UBERON:0000477!2.43e-20!286;UBERON:0004921!2.34e-19!129;UBERON:0004185!2.34e-19!129;UBERON:0004111!5.85e-19!241;UBERON:0000119!9.45e-19!312;UBERON:0000483!1.33e-18!309;UBERON:0001048!6.24e-18!168;UBERON:0000466!3.46e-17!126;UBERON:0000077!1.33e-16!130;UBERON:0000064!2.24e-15!219;UBERON:0000468!2.55e-15!659;UBERON:0001041!3.35e-14!98;UBERON:0005911!8.92e-14!82;UBERON:0000922!1.02e-13!612;UBERON:0000464!1.20e-13!104;UBERON:0000475!1.89e-13!365;UBERON:0000467!2.67e-13!625;UBERON:0000480!2.94e-13!626;UBERON:0002100!4.28e-13!216;UBERON:0009569!7.85e-13!113;UBERON:0002050!1.51e-12!605;UBERON:0005423!1.51e-12!605;UBERON:0003914!1.87e-12!118;UBERON:0000923!2.39e-12!604;UBERON:0005291!2.39e-12!604;UBERON:0006598!2.39e-12!604;UBERON:0002532!2.39e-12!604;UBERON:0003103!4.93e-12!69;UBERON:0001008!6.65e-12!45;UBERON:0000025!1.19e-11!194;UBERON:0005172!1.45e-11!55;UBERON:0005173!1.45e-11!55;UBERON:0006554!1.61e-11!44;UBERON:0000062!5.86e-11!511;UBERON:0001004!9.92e-11!72;UBERON:0003064!1.62e-10!37;UBERON:0000058!4.15e-10!26;UBERON:0000489!9.64e-09!32;UBERON:0002113!1.31e-08!27;UBERON:0003918!1.31e-08!27;UBERON:0005095!1.31e-08!27;UBERON:0007687!1.31e-08!27;UBERON:0000080!2.05e-08!18;UBERON:0002120!2.05e-08!18;UBERON:0004875!2.05e-08!18;UBERON:0005721!2.05e-08!18;UBERON:0005754!2.05e-08!18;UBERON:0007297!2.05e-08!18;UBERON:0004876!2.75e-08!20;UBERON:0002417!3.00e-08!61;UBERON:0000916!3.00e-08!61;UBERON:0006555!4.51e-08!17;UBERON:0005103!4.51e-08!17;UBERON:0000083!4.51e-08!17;UBERON:0009201!4.51e-08!17;UBERON:0004819!4.51e-08!17;UBERON:0006553!4.51e-08!17;UBERON:0003074!4.51e-08!17;UBERON:0003060!4.51e-08!17;UBERON:0002553!5.26e-08!70;UBERON:0004211!6.04e-08!16;UBERON:0001285!6.04e-08!16;UBERON:0007684!6.04e-08!16;UBERON:0003220!6.04e-08!16;UBERON:0004208!6.04e-08!16;UBERON:0005157!1.04e-07!51;UBERON:0000065!1.10e-07!53;UBERON:0003929!1.36e-07!54;UBERON:0001851!2.47e-07!16;UBERON:0008947!2.68e-07!38;UBERON:0003258!2.68e-07!38;UBERON:0000490!2.81e-07!138;UBERON:0003887!3.06e-07!21;UBERON:0005409!3.87e-07!35;UBERON:0005256!4.22e-07!143;UBERON:0000353!4.92e-07!17;UBERON:0000063!6.83e-07!97;UBERON:0000160!7.03e-07!27;UBERON:0005178!7.65e-07!34;UBERON:0002224!7.65e-07!34;UBERON:0005181!8.51e-07!35;UBERON:0009773!8.75e-07!12;UBERON:0001231!8.75e-07!12;UBERON:0004810!8.75e-07!12;UBERON:0003886!9.18e-07!63 | |||
|ontology_enrichment_uberon_v019=UBERON:0006554;5.90e-11;30!UBERON:0001008;5.90e-11;30!UBERON:0000489;2.03e-08;29!UBERON:0002113;2.52e-08;24!UBERON:0011143;2.52e-08;24!UBERON:0006555;3.01e-08;15!UBERON:0004819;3.01e-08;15!UBERON:0001285;3.01e-08;15!UBERON:0007684;3.01e-08;15!UBERON:0000353;6.43e-08;15!UBERON:0005911;7.30e-08;36!UBERON:0001851;1.38e-07;15!UBERON:0005172;2.01e-07;52!UBERON:0005173;2.01e-07;52!UBERON:0005177;2.89e-07;99!UBERON:0001225;9.59e-07;12!UBERON:0008987;9.59e-07;12 | |||
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| ||
|short_description=p1@LAMA5 | |||
}} | }} |
Latest revision as of 10:31, 17 September 2015
Short description: | p1@LAMA5 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_LAMA5_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000252999, NM_005560, uc002ycq.2_5end |
EntrezGene: | LAMA5 |
HGNC: | 6485 |
UniProt: | O15230 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 3.48e-50 | 253 |
endodermal cell | 1.07e-18 | 58 |
embryonic cell | 5.52e-18 | 250 |
endo-epithelial cell | 1.05e-15 | 42 |
squamous epithelial cell | 3.43e-13 | 63 |
epithelial cell of alimentary canal | 5.66e-09 | 20 |
epithelial cell of nephron | 2.99e-08 | 15 |
kidney cell | 3.83e-08 | 17 |
kidney epithelial cell | 3.83e-08 | 17 |
lining cell | 5.47e-07 | 58 |
barrier cell | 5.47e-07 | 58 |
kidney cortical cell | 9.48e-07 | 12 |
renal cortical epithelial cell | 9.48e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 9.08e-24 | 106 |
cell type cancer | 3.02e-20 | 143 |
adenocarcinoma | 5.10e-08 | 25 |
squamous cell carcinoma | 2.21e-07 | 14 |
cancer | 5.37e-07 | 235 |