FFCP PHASE1:Hg19::chr7:25164936..25164952,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr7:25164936..25164952,-
|short_description=p2@CYCS
|description=CAGE_peak_2_at_CYCS_5end
|association_with_transcript=2bp_to_uc003sxl.2_5end
|EntrezGene=5420...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=54205 | |EntrezGene=54205 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=19986 | |HGNC=19986 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=2bp_to_uc003sxl.2_5end | |||
|cluster_id=chr7:25164936..25164952,- | |||
|description=CAGE_peak_2_at_CYCS_5end | |||
|id=chr7:25164936..25164952,- | |||
|ontology_enrichment_celltype=CL:0000542!1.01e-18!53;CL:0000051!1.01e-18!53;CL:0000838!2.71e-18!52;CL:0000084!2.44e-10!25;CL:0000827!2.44e-10!25;CL:0000945!2.15e-08!24;CL:0000826!2.15e-08!24;CL:0000791!8.27e-08!18;CL:0000789!8.27e-08!18;CL:0002420!8.27e-08!18;CL:0002419!8.27e-08!18;CL:0000790!8.27e-08!18 | |||
|ontology_enrichment_celltype_v019=CL:0000542;1.81e-11;53!CL:0000084;4.11e-10;25!CL:0000945;1.84e-08;24!CL:0000791;1.56e-07;18!CL:0000789;1.56e-07;18!CL:0002419;1.56e-07;18 | |||
|ontology_enrichment_celltype_v019_2=CL:0000542,9.81e-19,53;CL:0000051,9.81e-19,53;CL:0000838,2.64e-18,52;CL:0000084,2.40e-10,25;CL:0000827,2.40e-10,25;CL:0000945,2.13e-08,24;CL:0000826,2.13e-08,24;CL:0000791,8.19e-08,18;CL:0000789,8.19e-08,18;CL:0002420,8.19e-08,18;CL:0002419,8.19e-08,18;CL:0000790,8.19e-08,18 | |||
|ontology_enrichment_development_v019=CL:0000051;1.81e-11;53!CL:0000790;1.56e-07;18 | |||
|ontology_enrichment_disease=DOID:162!5.76e-09!235;DOID:14566!1.84e-08!239 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:162,6.03e-09,235;DOID:14566,1.93e-08,239 | |||
|ontology_enrichment_uberon=UBERON:0001017!3.10e-13!82;UBERON:0000073!4.04e-13!94;UBERON:0001016!4.04e-13!94;UBERON:0001869!1.90e-12!32;UBERON:0002780!2.10e-12!41;UBERON:0001890!2.10e-12!41;UBERON:0006240!2.10e-12!41;UBERON:0005743!5.80e-12!86;UBERON:0003080!1.30e-11!42;UBERON:0001893!1.80e-11!34;UBERON:0002020!3.12e-11!34;UBERON:0003528!3.12e-11!34;UBERON:0002791!3.50e-11!33;UBERON:0000955!1.66e-10!69;UBERON:0006238!1.66e-10!69;UBERON:0000956!4.60e-10!25;UBERON:0000203!4.60e-10!25;UBERON:0002619!5.29e-10!22;UBERON:0001049!7.96e-10!57;UBERON:0005068!7.96e-10!57;UBERON:0006241!7.96e-10!57;UBERON:0007135!7.96e-10!57;UBERON:0001950!3.62e-09!20;UBERON:0002616!2.29e-08!59;UBERON:0002346!2.33e-08!90;UBERON:0003056!2.37e-08!61;UBERON:0003075!1.29e-07!86;UBERON:0007284!1.29e-07!86 | |||
|ontology_enrichment_uberon_v019=UBERON:0001869;1.33e-11;32!UBERON:0002791;1.12e-10;32!UBERON:0003528;2.02e-10;34!UBERON:0002020;2.02e-10;34!UBERON:0001893;3.08e-10;34!UBERON:0000956;3.55e-10;25!UBERON:0000203;3.55e-10;25!UBERON:0002619;7.00e-10;22!UBERON:0002780;1.60e-09;41!UBERON:0001890;1.60e-09;41!UBERON:0001950;4.83e-09;20!UBERON:0000955;6.84e-07;68 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,6.59e-15,89;UBERON:0001017,9.38e-14,81;UBERON:0001869,1.87e-12,32;UBERON:0002780,2.07e-12,41;UBERON:0001890,2.07e-12,41;UBERON:0003080,2.07e-12,41;UBERON:0006240,2.07e-12,41;UBERON:0001893,1.78e-11,34;UBERON:0002791,2.07e-11,32;UBERON:0003528,3.07e-11,34;UBERON:0002020,3.07e-11,34;UBERON:0000955,5.36e-11,68;UBERON:0006238,5.36e-11,68;UBERON:0001049,2.35e-10,56;UBERON:0005068,2.35e-10,56;UBERON:0006241,2.35e-10,56;UBERON:0007135,2.35e-10,56;UBERON:0000956,4.54e-10,25;UBERON:0000203,4.54e-10,25;UBERON:0002619,5.22e-10,22;UBERON:0000073,9.96e-10,53;UBERON:0002616,9.96e-10,53;UBERON:0001950,3.58e-09,20;UBERON:0003056,1.28e-08,61;UBERON:0002346,3.66e-08,86;UBERON:0003075,2.02e-07,82;UBERON:0007284,2.02e-07,82 | |||
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| ||
|short_description=p2@CYCS | |||
}} | }} |
Latest revision as of 22:02, 17 September 2015
Short description: | p2@CYCS |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_CYCS_5end |
Coexpression cluster: | NA |
Association with transcript: | 2bp_to_uc003sxl.2_5end |
EntrezGene: | CYCS |
HGNC: | 19986 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte | 9.81e-19 | 53 |
common lymphoid progenitor | 9.81e-19 | 53 |
lymphoid lineage restricted progenitor cell | 2.64e-18 | 52 |
T cell | 2.40e-10 | 25 |
pro-T cell | 2.40e-10 | 25 |
lymphocyte of B lineage | 2.13e-08 | 24 |
pro-B cell | 2.13e-08 | 24 |
mature alpha-beta T cell | 8.19e-08 | 18 |
alpha-beta T cell | 8.19e-08 | 18 |
immature T cell | 8.19e-08 | 18 |
mature T cell | 8.19e-08 | 18 |
immature alpha-beta T cell | 8.19e-08 | 18 |
Ontology term | p-value | n |
---|---|---|
nervous system | 6.59e-15 | 89 |
central nervous system | 9.38e-14 | 81 |
cerebral hemisphere | 1.87e-12 | 32 |
regional part of forebrain | 2.07e-12 | 41 |
forebrain | 2.07e-12 | 41 |
anterior neural tube | 2.07e-12 | 41 |
future forebrain | 2.07e-12 | 41 |
telencephalon | 1.78e-11 | 34 |
regional part of telencephalon | 2.07e-11 | 32 |
brain grey matter | 3.07e-11 | 34 |
gray matter | 3.07e-11 | 34 |
brain | 5.36e-11 | 68 |
future brain | 5.36e-11 | 68 |
neural tube | 2.35e-10 | 56 |
neural rod | 2.35e-10 | 56 |
future spinal cord | 2.35e-10 | 56 |
neural keel | 2.35e-10 | 56 |
cerebral cortex | 4.54e-10 | 25 |
pallium | 4.54e-10 | 25 |
regional part of cerebral cortex | 5.22e-10 | 22 |
regional part of nervous system | 9.96e-10 | 53 |
regional part of brain | 9.96e-10 | 53 |
neocortex | 3.58e-09 | 20 |
pre-chordal neural plate | 1.28e-08 | 61 |
neurectoderm | 3.66e-08 | 86 |
neural plate | 2.02e-07 | 82 |
presumptive neural plate | 2.02e-07 | 82 |
Ontology term | p-value | n |
---|---|---|
cancer | 6.03e-09 | 235 |
disease of cellular proliferation | 1.93e-08 | 239 |