FFCP PHASE1:Hg19::chr21:27253235..27253255,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=351 | |EntrezGene=351 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=620 | |HGNC=620 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-37bp_to_S41242,S41243_5end | |association_with_transcript=-37bp_to_S41242,S41243_5end | ||
|cluster_id=chr21:27253235..27253255,- | |||
|description=CAGE_peak_3_at_APP_5end | |description=CAGE_peak_3_at_APP_5end | ||
|id=chr21:27253235..27253255,- | |id=chr21:27253235..27253255,- | ||
|ontology_enrichment_celltype=CL:0000066!4.57e-07!254 | |ontology_enrichment_celltype=CL:0000066!4.57e-07!254 | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000468!5.18e-16!659;UBERON:0000467!1.12e-12!625;UBERON:0001017!2.18e-12!82;UBERON:0000480!2.33e-12!626;UBERON:0005743!4.35e-12!86;UBERON:0000073!1.53e-11!94;UBERON:0001016!1.53e-11!94;UBERON:0001049!4.99e-11!57;UBERON:0005068!4.99e-11!57;UBERON:0006241!4.99e-11!57;UBERON:0007135!4.99e-11!57;UBERON:0000955!2.75e-10!69;UBERON:0006238!2.75e-10!69;UBERON:0002020!3.51e-10!34;UBERON:0003528!3.51e-10!34;UBERON:0002780!7.83e-10!41;UBERON:0001890!7.83e-10!41;UBERON:0006240!7.83e-10!41;UBERON:0002616!8.52e-10!59;UBERON:0000924!9.19e-10!173;UBERON:0006601!9.19e-10!173;UBERON:0003080!1.70e-09!42;UBERON:0004121!1.85e-09!169;UBERON:0002791!2.95e-09!33;UBERON:0000922!3.20e-09!612;UBERON:0000475!3.63e-09!365;UBERON:0001893!3.69e-09!34;UBERON:0001869!8.78e-09!32;UBERON:0002050!1.26e-08!605;UBERON:0005423!1.26e-08!605;UBERON:0004111!1.59e-08!241;UBERON:0000923!1.64e-08!604;UBERON:0005291!1.64e-08!604;UBERON:0006598!1.64e-08!604;UBERON:0002532!1.64e-08!604;UBERON:0000062!3.76e-08!511;UBERON:0002619!6.70e-08!22;UBERON:0005156!8.53e-08!59;UBERON:0000990!8.53e-08!59;UBERON:0000483!1.20e-07!309;UBERON:0000119!1.59e-07!312;UBERON:0000477!2.35e-07!286;UBERON:0000956!2.49e-07!25;UBERON:0000203!2.49e-07!25;UBERON:0001950!3.44e-07!20 | |||
|ontology_enrichment_uberon_v019=UBERON:0002791;5.16e-09;32!UBERON:0003528;6.38e-09;34!UBERON:0002020;6.38e-09;34!UBERON:0001869;1.64e-08;32!UBERON:0002619;3.24e-08;22!UBERON:0001893;4.59e-08;34!UBERON:0000956;1.32e-07;25!UBERON:0000203;1.32e-07;25!UBERON:0002780;1.34e-07;41!UBERON:0001890;1.34e-07;41!UBERON:0001950;1.89e-07;20 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.67e-12,81;UBERON:0001016,7.89e-12,89;UBERON:0001049,2.24e-11,56;UBERON:0005068,2.24e-11,56;UBERON:0006241,2.24e-11,56;UBERON:0007135,2.24e-11,56;UBERON:0000073,1.82e-10,53;UBERON:0002616,1.82e-10,53;UBERON:0003528,2.09e-10,34;UBERON:0002020,2.09e-10,34;UBERON:0000955,2.36e-10,68;UBERON:0006238,2.36e-10,68;UBERON:0002780,4.80e-10,41;UBERON:0001890,4.80e-10,41;UBERON:0003080,4.80e-10,41;UBERON:0006240,4.80e-10,41;UBERON:0004121,7.20e-10,171;UBERON:0000924,7.20e-10,171;UBERON:0006601,7.20e-10,171;UBERON:0010371,7.38e-10,104;UBERON:0002791,1.39e-09,32;UBERON:0001893,2.33e-09,34;UBERON:0001869,5.68e-09,32;UBERON:0004111,2.95e-08,240;UBERON:0002619,4.57e-08,22;UBERON:0000483,1.50e-07,306;UBERON:0005156,1.51e-07,59;UBERON:0000990,1.51e-07,59;UBERON:0000956,1.75e-07,25;UBERON:0000203,1.75e-07,25;UBERON:0000119,1.99e-07,309;UBERON:0001950,2.45e-07,20;UBERON:0002346,2.49e-07,86;UBERON:0003075,4.68e-07,82;UBERON:0007284,4.68e-07,82 | |||
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| ||
|short_description=p3@APP | |short_description=p3@APP | ||
}} | }} |
Latest revision as of 22:35, 17 September 2015
Short description: | p3@APP |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_APP_5end |
Coexpression cluster: | NA |
Association with transcript: | -37bp_to_S41242, S41243_5end |
EntrezGene: | APP |
HGNC: | 620 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
central nervous system | 1.67e-12 | 81 |
nervous system | 7.89e-12 | 89 |
neural tube | 2.24e-11 | 56 |
neural rod | 2.24e-11 | 56 |
future spinal cord | 2.24e-11 | 56 |
neural keel | 2.24e-11 | 56 |
regional part of nervous system | 1.82e-10 | 53 |
regional part of brain | 1.82e-10 | 53 |
brain grey matter | 2.09e-10 | 34 |
gray matter | 2.09e-10 | 34 |
brain | 2.36e-10 | 68 |
future brain | 2.36e-10 | 68 |
regional part of forebrain | 4.80e-10 | 41 |
forebrain | 4.80e-10 | 41 |
anterior neural tube | 4.80e-10 | 41 |
future forebrain | 4.80e-10 | 41 |
ectoderm-derived structure | 7.20e-10 | 171 |
ectoderm | 7.20e-10 | 171 |
presumptive ectoderm | 7.20e-10 | 171 |
ecto-epithelium | 7.38e-10 | 104 |
regional part of telencephalon | 1.39e-09 | 32 |
telencephalon | 2.33e-09 | 34 |
cerebral hemisphere | 5.68e-09 | 32 |
anatomical conduit | 2.95e-08 | 240 |
regional part of cerebral cortex | 4.57e-08 | 22 |
epithelium | 1.50e-07 | 306 |
reproductive structure | 1.51e-07 | 59 |
reproductive system | 1.51e-07 | 59 |
cerebral cortex | 1.75e-07 | 25 |
pallium | 1.75e-07 | 25 |
cell layer | 1.99e-07 | 309 |
neocortex | 2.45e-07 | 20 |
neurectoderm | 2.49e-07 | 86 |
neural plate | 4.68e-07 | 82 |
presumptive neural plate | 4.68e-07 | 82 |