FFCP PHASE1:Hg19::chr7:29233617..29233639,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1124 | |EntrezGene=1124 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1944 | |HGNC=1944 | ||
|TSSclassifier=strong | |||
|UniProt=P52757 | |UniProt=P52757 | ||
|association_with_transcript=-388bp_to_ENST00000222792_5end | |association_with_transcript=-388bp_to_ENST00000222792_5end | ||
|cluster_id=chr7:29233617..29233639,+ | |||
|coexpression_cluster_id=C11 | |coexpression_cluster_id=C11 | ||
|description=CAGE_peak_20_at_CHN2_5end | |description=CAGE_peak_20_at_CHN2_5end | ||
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|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |ontology_enrichment_celltype_v019= | ||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006215;5.01e-67;3 | |ontology_enrichment_development_v019=UBERON:0006215;5.01e-67;3 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
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| ||
|short_description=p20@CHN2 | |short_description=p20@CHN2 | ||
}} | }} |
Latest revision as of 03:56, 18 September 2015
Short description: | p20@CHN2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_20_at_CHN2_5end |
Coexpression cluster: | C11_cerebellum_medulla_pons_parietal_occipital_middle_medial |
Association with transcript: | -388bp_to_ENST00000222792_5end |
EntrezGene: | CHN2 |
HGNC: | 1944 |
UniProt: | P52757 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
cerebellum | 5.37e-34 | 6 |
rhombic lip | 5.37e-34 | 6 |
segmental subdivision of hindbrain | 7.91e-30 | 12 |
hindbrain | 7.91e-30 | 12 |
presumptive hindbrain | 7.91e-30 | 12 |
segmental subdivision of nervous system | 1.40e-27 | 13 |
posterior neural tube | 5.59e-24 | 15 |
chordal neural plate | 5.59e-24 | 15 |
regional part of metencephalon | 5.99e-23 | 9 |
metencephalon | 5.99e-23 | 9 |
future metencephalon | 5.99e-23 | 9 |
regional part of nervous system | 7.71e-20 | 53 |
regional part of brain | 7.71e-20 | 53 |
neural tube | 8.55e-19 | 56 |
neural rod | 8.55e-19 | 56 |
future spinal cord | 8.55e-19 | 56 |
neural keel | 8.55e-19 | 56 |
brain | 2.70e-15 | 68 |
future brain | 2.70e-15 | 68 |
central nervous system | 6.94e-13 | 81 |
neural plate | 6.94e-13 | 82 |
presumptive neural plate | 6.94e-13 | 82 |
neurectoderm | 2.75e-12 | 86 |
nervous system | 1.30e-11 | 89 |
ecto-epithelium | 3.73e-10 | 104 |
neocortex | 4.88e-10 | 20 |
regional part of cerebral cortex | 3.21e-09 | 22 |
duodenum | 1.04e-08 | 2 |
medulla oblongata | 1.51e-08 | 3 |
myelencephalon | 1.51e-08 | 3 |
future myelencephalon | 1.51e-08 | 3 |
cerebral cortex | 3.16e-08 | 25 |
pallium | 3.16e-08 | 25 |
structure with developmental contribution from neural crest | 5.66e-08 | 132 |