FFCP PHASE1:Hg19::chr19:42212526..42212575,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(8 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1048 | |EntrezGene=1048 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1817 | |HGNC=1817 | ||
|TSSclassifier=strong | |||
|UniProt=P06731 | |UniProt=P06731 | ||
|association_with_transcript=0bp_to_ENST00000405816,ENST00000460121,NM_004363,uc002orj.1,uc002ork.2,uc002orl.2,uc010ehz.1_5end | |association_with_transcript=0bp_to_ENST00000405816,ENST00000460121,NM_004363,uc002orj.1,uc002ork.2,uc002orl.2,uc010ehz.1_5end | ||
|cluster_id=chr19:42212526..42212575,+ | |||
|description=CAGE_peak_1_at_CEACAM5_5end | |description=CAGE_peak_1_at_CEACAM5_5end | ||
|id=chr19:42212526..42212575,+ | |id=chr19:42212526..42212575,+ | ||
|ontology_enrichment_celltype=CL:0002076!7.15e-24!43;CL:0000223!2.83e-17!59;CL:0002368!6.06e-14!13;CL:0000066!5.50e-11!254;CL:0002251!5.05e-09!21;CL:0002202!5.80e-09!9;CL:0002632!5.80e-09!9 | |ontology_enrichment_celltype=CL:0002076!7.15e-24!43;CL:0000223!2.83e-17!59;CL:0002368!6.06e-14!13;CL:0000066!5.50e-11!254;CL:0002251!5.05e-09!21;CL:0002202!5.80e-09!9;CL:0002632!5.80e-09!9 | ||
|ontology_enrichment_celltype_v019=CL:0002076;2.26e-19;42!CL:0002368;6.37e-17;13!CL:0002251;1.06e-10;20!CL:0002202;6.31e-10;9!CL:0002632;6.31e-10;9!CL:0000244;8.71e-09;4!CL:0000731;8.71e-09;4!CL:0002231;3.63e-07;3!CL:0000307;7.34e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002076,2.02e-24,42;CL:0000223,2.16e-17,58;CL:0002368,7.43e-17,13;CL:0002251,1.14e-10,20;CL:0002202,6.91e-10,9;CL:0002632,6.91e-10,9;CL:0000244,8.72e-09,4;CL:0000731,8.72e-09,4;CL:0000066,1.40e-07,253;CL:0002231,3.79e-07,3;CL:0000068,7.50e-07,3;CL:0000069,7.50e-07,3;CL:0000307,7.50e-07,3;CL:0000377,7.50e-07,3 | |||
|ontology_enrichment_development_v019=UBERON:0006595;1.26e-09;86!CL:0000223;3.58e-09;58!CL:0000377;7.34e-07;3 | |||
|ontology_enrichment_disease=DOID:305!1.39e-09!106;DOID:0050687!3.40e-08!143;DOID:299!5.41e-08!25 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004119!8.56e-30!169;UBERON:0000925!8.56e-30!169;UBERON:0006595!8.56e-30!169;UBERON:0001007!7.12e-25!155;UBERON:0001555!7.12e-25!155;UBERON:0007026!7.12e-25!155;UBERON:0004921!2.25e-24!129;UBERON:0004185!2.25e-24!129;UBERON:0000077!3.06e-18!130;UBERON:0001004!6.11e-18!72;UBERON:0000065!2.01e-13!53;UBERON:0005178!1.41e-12!34;UBERON:0002224!1.41e-12!34;UBERON:0005181!4.77e-12!35;UBERON:0001041!5.34e-12!98;UBERON:0000161!7.19e-12!35;UBERON:0005911!8.84e-11!82;UBERON:0000464!1.16e-10!104;UBERON:0005409!5.08e-10!35;UBERON:0000915!8.27e-10!52;UBERON:0001046!2.62e-09!19;UBERON:0000160!2.88e-09!27;UBERON:0005153!3.32e-09!37;UBERON:0007196!9.65e-09!14;UBERON:0001558!9.65e-09!14;UBERON:0002048!2.44e-08!22;UBERON:0000117!2.44e-08!22;UBERON:0000171!2.44e-08!22;UBERON:0000170!2.44e-08!22;UBERON:0005597!2.44e-08!22;UBERON:0000118!2.44e-08!22;UBERON:0000466!2.92e-08!126;UBERON:0008947!3.70e-08!38;UBERON:0003258!3.70e-08!38;UBERON:0000072!5.55e-08!46;UBERON:0001044!8.09e-08!6;UBERON:0003293!8.09e-08!6;UBERON:0003294!8.09e-08!6;UBERON:0010047!8.09e-08!6;UBERON:0000167!8.09e-08!6;UBERON:0000166!1.11e-07!21;UBERON:0005157!1.14e-07!51;UBERON:0000365!1.29e-07!5;UBERON:0003408!1.48e-07!10;UBERON:0000344!5.84e-07!12;UBERON:0000059!5.96e-07!11 | |||
|ontology_enrichment_uberon_v019=UBERON:0004921;1.99e-23;33!UBERON:0005409;2.83e-17;22!UBERON:0000160;8.76e-14;17!UBERON:0005181;1.98e-12;35!UBERON:0001555;2.75e-12;54!UBERON:0005178;2.83e-12;34!UBERON:0002224;2.83e-12;34!UBERON:0001041;3.56e-11;14!UBERON:0000365;2.82e-10;5!UBERON:0000059;5.99e-10;11!UBERON:0007196;1.13e-09;15!UBERON:0001558;1.13e-09;15!UBERON:0005911;1.51e-09;36!UBERON:0000065;1.04e-08;44!UBERON:0005910;1.68e-08;6!UBERON:0003126;7.38e-08;7!UBERON:0001005;7.38e-08;7!UBERON:0004907;1.01e-07;5!UBERON:0002048;1.14e-07;22!UBERON:0000117;1.14e-07;22!UBERON:0000171;1.14e-07;22!UBERON:0000170;1.14e-07;22!UBERON:0001007;1.84e-07;81!UBERON:0000915;4.79e-07;52!UBERON:0000485;5.95e-07;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,2.07e-35,160;UBERON:0000925,2.07e-35,160;UBERON:0006595,2.07e-35,160;UBERON:0004921,4.56e-30,118;UBERON:0001007,1.66e-28,145;UBERON:0001555,1.66e-28,145;UBERON:0007026,1.66e-28,145;UBERON:0001004,2.76e-19,74;UBERON:0000065,4.20e-15,54;UBERON:0005409,7.36e-15,25;UBERON:0005178,4.49e-14,34;UBERON:0002224,4.49e-14,34;UBERON:0000160,8.16e-14,17;UBERON:0005181,1.52e-13,35;UBERON:0001041,3.91e-13,87;UBERON:0000161,7.78e-13,36;UBERON:0001046,9.45e-12,19;UBERON:0011216,4.98e-11,223;UBERON:0005911,2.49e-10,82;UBERON:0000365,2.55e-10,5;UBERON:0000915,4.87e-10,52;UBERON:0000059,5.68e-10,11;UBERON:0007196,1.20e-09,15;UBERON:0001558,1.20e-09,15;UBERON:0000072,3.97e-09,47;UBERON:0008947,4.28e-09,38;UBERON:0003258,4.28e-09,38;UBERON:0005910,1.54e-08,6;UBERON:0005153,5.66e-08,37;UBERON:0003126,7.44e-08,7;UBERON:0001005,7.44e-08,7;UBERON:0000166,8.56e-08,22;UBERON:0004907,9.37e-08,5;UBERON:0002048,1.13e-07,22;UBERON:0000117,1.13e-07,22;UBERON:0000171,1.13e-07,22;UBERON:0000170,1.13e-07,22;UBERON:0005597,1.13e-07,22;UBERON:0000118,1.13e-07,22 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0.697801167972428,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.75826367343678,2.10844143144775,1.10926203050036,0,0,0,0,0,0,0,0,0,0,0,0.242584061187816,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.05399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.99486180268024,1.45718115317017,0.741568885568859,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24406205754817,0,0,0,0,0,0,0,0,0,0,2.18047026071267,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.09098448236334,0,0,0,0,0.207322110030741,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,27.057456479485,0,0,0,0,0.0925884451585296,0,0,0,0,0,0,0,0,3.95102198979638,10.3018339451385,0,0,0,0,0,0,0,0,0,0,0,0.621984346622316,0.144119953416961,0.88369703398466,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.6141453242722,1.20303882181971,104.78816540905,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.14023992017006,0,0,0.574265537996172,0.650060246036521,0,0,0,0,0,0,0,0,0,3.14041339185858,11.7235941092715,16.8448780492851,9.50883140042169,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.30933070541229,26.1417887458957,2.17781969722645,9.60266767923147,3.87454835404107,5.05414427002877,19.0674966020771,3.44585100310439,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.425846237690326,0,0,0,0,0,0,0,0,0,0,17.029789177148,0,0,0,0,0,0,0,0,0,0,0,2.11125408127993,6.37593562403423,234.565044285944,0,0,0,0,0,56.7497123721681,0,2.66337195219721,0,0,0,0,0,0.260427761085233,0.0874599999961957,0,2.04828206913899,1.01701460117107,0,0,3.49925536059905,0,0,0,0,0,0,0,0,39.1780721422875,37.3978256328454,0,0,0,0.651884231532048,0,0,0,0,0,0,0,0,0,0,0,0,0,1.69623685720729,0,301.564365116787,65.2816826034643,702.073636528736,0.296521128680622,0,0,0.269604531922708,0,0,0,20.5447849878694,0,0,30.247679012166,0,0.568679216656392,0.300646838828985,0,0,0,0,1.19472429772959,0.284609546029793,0.138674673013139,0.520679215005393,0.881931576729399,0,0,0,0,0,0,284.662763393511,0.0882561266915003,7.6833451865381,0,0,0,45.5634721772091,0.240476460754601,3.20179492109029,0,1282.11653183724,0,0.171594997861965,0.864328787928898,0,0.471388069233591,0,0,0,0,0,0,0,0,0,0,0,0,0.998395002494955,0,0,0.671834724867263,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.34804281319486,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.39521573038061,177.613385623801,4.59185874041087,0.314408610199332,7.87054205159671,0,0,0,0.638341257770182,0,0,0,0,66.9050450025998,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.29773342777959,0,0,0,0,0,7.83325243228889,0.622077260032973,0,0,1.41539347670307,0,0,0,10.5345399620152,0,0,0,1193.65098569364,0,0,0,0,0,0,0,0,0,0,0,42.9409792985775,4.58571496304198,0,0,0,0,0.0752103283492573,0,0,0,0,0.295712172434091,0.202612753855184,0,0,0,0,4.38606213485746,3.47347824872506,0.703484977438482,11.2430936322844,0,0,0,0.227662191351298,0,0,0,0,0,0,7.78619813244484,0.549451649953598,0,67.5455913586232,62.0947929946457,0,0,0.214429632529969,0,0,0,0,1.24329698497822,0.17071847709395,2.07377898544228,2.58136415292167,0,0,0,0,0,0,0,76.6553324535048,0.121917924982269,0,0,0,4.85710993059139,23.1600068827485,0,0,0.79062257427272,0,18.5684297587008,22.380505851304,9.83518022267808,103.940122495897,0,1061.48716814572,0,0,0,0,0,0,0,68.2076045473612,0,0,36.5168194123259,0.917458566809082,0,0,0,0,38.6189593576242,0,0,0,0,0,0,0,0,0,0,0.151557396436479,0.267964130156178,0,0,150.329957240192,11.6651571417233,1.0980114672121,0.993195428733726,0,0.25458863311266,0,77.0717287555243,21.902931269458,271.0246613307,347.780973949088,30.2720924456872,1.79087190944144,0,0,0.179650404213174,0,2.2003459952916,6.10344267473608,31.2905683867191,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0.697801167972428,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.75826367343678,2.10844143144775,1.10926203050036,0,0,0,0,0,0,0,0,0,0,0,0.242584061187816,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.05399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.99486180268024,1.45718115317017,0.741568885568859,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24406205754817,0,0,0,0,0,0,0,0,0,0,2.18047026071267,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.09098448236334,0,0,0,0,0.207322110030741,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,27.057456479485,0,0,0,0,0.0925884451585296,0,0,0,0,0,0,0,0,3.95102198979638,10.3018339451385,0,0,0,0,0,0,0,0,0,0,0,0.621984346622316,0.144119953416961,0.88369703398466,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.6141453242722,1.20303882181971,104.78816540905,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.14023992017006,0,0,0.574265537996172,0.650060246036521,0,0,0,0,0,0,0,0,0,3.14041339185858,11.7235941092715,16.8448780492851,9.50883140042169,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.30933070541229,26.1417887458957,2.17781969722645,9.60266767923147,3.87454835404107,5.05414427002877,19.0674966020771,3.44585100310439,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.425846237690326,0,0,0,0,0,0,0,0,0,0,17.029789177148,0,0,0,0,0,0,0,0,0,0,0,2.11125408127993,6.37593562403423,234.565044285944,0,0,0,0,0,56.7497123721681,0,2.66337195219721,0,0,0,0,0,0.260427761085233,0.0874599999961957,0,2.04828206913899,1.01701460117107,0,0,3.49925536059905,0,0,0,0,0,0,0,0,39.1780721422875,37.3978256328454,0,0,0,0.651884231532048,0,0,0,0,0,0,0,0,0,0,0,0,0,1.69623685720729,0,301.564365116787,65.2816826034643,702.073636528736,0.296521128680622,0,0,0.269604531922708,0,0,0,20.5447849878694,0,0,30.247679012166,0,0.568679216656392,0.300646838828985,0,0,0,0,1.19472429772959,0.284609546029793,0.138674673013139,0.520679215005393,0.881931576729399,0,0,0,0,0,0,284.662763393511,0.0882561266915003,7.6833451865381,0,0,0,45.5634721772091,0.240476460754601,3.20179492109029,0,1282.11653183724,0,0.171594997861965,0.864328787928898,0,0.471388069233591,0,0,0,0,0,0,0,0,0,0,0,0,0.998395002494955,0,0,0.671834724867263,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.34804281319486,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.39521573038061,177.613385623801,4.59185874041087,0.314408610199332,7.87054205159671,0,0,0,0.638341257770182,0,0,0,0,66.9050450025998,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.29773342777959,0,0,0,0,0,7.83325243228889,0.622077260032973,0,0,1.41539347670307,0,0,0,10.5345399620152,0,0,0,1193.65098569364,0,0,0,0,0,0,0,0,0,0,0,42.9409792985775,4.58571496304198,0,0,0,0,0.0752103283492573,0,0,0,0,0.295712172434091,0.202612753855184,0,0,0,0,4.38606213485746,3.47347824872506,0.703484977438482,11.2430936322844,0,0,0,0.227662191351298,0,0,0,0,0,0,7.78619813244484,0.549451649953598,0,67.5455913586232,62.0947929946457,0,0,0.214429632529969,0,0,0,0,1.24329698497822,0.17071847709395,2.07377898544228,2.58136415292167,0,0,0,0,0,0,0,76.6553324535048,0.121917924982269,0,0,0,4.85710993059139,23.1600068827485,0,0,0.79062257427272,0,18.5684297587008,22.380505851304,9.83518022267808,103.940122495897,0,1061.48716814572,0,0,0,0,0,0,0,68.2076045473612,0,0,36.5168194123259,0.917458566809082,0,0,0,0,38.6189593576242,0,0,0,0,0,0,0,0,0,0,0.151557396436479,0.267964130156178,0,0,150.329957240192,11.6651571417233,1.0980114672121,0.993195428733726,0,0.25458863311266,0,77.0717287555243,21.902931269458,271.0246613307,347.780973949088,30.2720924456872,1.79087190944144,0,0,0.179650404213174,0,2.2003459952916,6.10344267473608,31.2905683867191,0,0 | ||
|short_description=p1@CEACAM5 | |short_description=p1@CEACAM5 | ||
}} | }} |
Latest revision as of 06:15, 18 September 2015
Short description: | p1@CEACAM5 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_CEACAM5_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000405816, ENST00000460121, NM_004363, uc002orj.1, uc002ork.2, uc002orl.2, uc010ehz.1_5end |
EntrezGene: | CEACAM5 |
HGNC: | 1817 |
UniProt: | P06731 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endo-epithelial cell | 2.02e-24 | 42 |
endodermal cell | 2.16e-17 | 58 |
respiratory epithelial cell | 7.43e-17 | 13 |
epithelial cell of alimentary canal | 1.14e-10 | 20 |
epithelial cell of tracheobronchial tree | 6.91e-10 | 9 |
epithelial cell of lower respiratory tract | 6.91e-10 | 9 |
transitional epithelial cell | 8.72e-09 | 4 |
urothelial cell | 8.72e-09 | 4 |
epithelial cell | 1.40e-07 | 253 |
epithelial cell of prostate | 3.79e-07 | 3 |
duct epithelial cell | 7.50e-07 | 3 |
branched duct epithelial cell | 7.50e-07 | 3 |
tracheal epithelial cell | 7.50e-07 | 3 |
tracheoblast | 7.50e-07 | 3 |