FFCP PHASE1:Hg19::chr14:101034622..101034645,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr14:101034622..101034645,- to FFCP PHASE1:Hg19::chr14:101034622..101034645,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=57596 | |EntrezGene=57596 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=24163 | |HGNC=24163 | ||
|TSSclassifier=strong | |||
|UniProt=G3V2K4,Q9BUH8 | |UniProt=G3V2K4,Q9BUH8 | ||
|association_with_transcript=-215bp_to_ENST00000443071,ENST00000557378,NM_001159531,uc010txa.1_5end | |||
|cluster_id=chr14:101034622..101034645,- | |||
|description=CAGE_peak_5_at_BEGAIN_5end | |||
|id=chr14:101034622..101034645,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000097;4.54e-12;5!CL:0000163;6.75e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000097,5.17e-12,5;CL:0002028,5.17e-12,5;CL:0000163,7.24e-07,9 | |||
|ontology_enrichment_development_v019=UBERON:0008947;8.93e-24;29!UBERON:0006215;8.08e-19;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:305,4.62e-10,106;DOID:0050687,9.66e-08,143 | |||
|ontology_enrichment_uberon=UBERON:0001049!1.36e-23!57;UBERON:0005068!1.36e-23!57;UBERON:0006241!1.36e-23!57;UBERON:0007135!1.36e-23!57;UBERON:0002616!4.48e-21!59;UBERON:0007023!4.47e-19!115;UBERON:0003075!8.80e-19!86;UBERON:0007284!8.80e-19!86;UBERON:0000955!1.23e-18!69;UBERON:0006238!1.23e-18!69;UBERON:0002346!2.25e-17!90;UBERON:0001017!7.64e-17!82;UBERON:0005743!1.19e-16!86;UBERON:0000073!4.66e-16!94;UBERON:0001016!4.66e-16!94;UBERON:0001737!4.31e-15!9;UBERON:0002780!1.00e-14!41;UBERON:0001890!1.00e-14!41;UBERON:0006240!1.00e-14!41;UBERON:0003080!3.31e-14!42;UBERON:0004733!9.68e-13!12;UBERON:0002028!9.68e-13!12;UBERON:0007277!9.68e-13!12;UBERON:0002680!3.25e-12!9;UBERON:0001895!3.25e-12!9;UBERON:0010092!3.25e-12!9;UBERON:0004732!1.56e-11!13;UBERON:0003076!2.38e-11!15;UBERON:0003057!2.38e-11!15;UBERON:0001893!6.28e-11!34;UBERON:0000033!7.37e-11!123;UBERON:0002020!9.59e-11!34;UBERON:0003528!9.59e-11!34;UBERON:0000153!2.12e-10!129;UBERON:0007811!2.12e-10!129;UBERON:0003056!2.69e-10!61;UBERON:0002791!5.01e-10!33;UBERON:0001557!7.82e-10!19;UBERON:0001869!1.64e-09!32;UBERON:0002037!5.10e-09!6;UBERON:0006215!5.10e-09!6;UBERON:0004121!4.50e-08!169;UBERON:0000064!8.56e-08!219;UBERON:0000924!1.31e-07!173;UBERON:0006601!1.31e-07!173;UBERON:0002619!1.91e-07!22;UBERON:0000956!3.26e-07!25;UBERON:0000203!3.26e-07!25;UBERON:0001950!4.45e-07!20 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;2.82e-54;9!UBERON:0001557;2.82e-54;9!UBERON:0000072;1.51e-16;37!UBERON:0000065;3.99e-14;44!UBERON:0000007;5.52e-13;2!UBERON:0002680;6.74e-11;9!UBERON:0001895;6.74e-11;9!UBERON:0002037;1.12e-09;6!UBERON:0005383;9.27e-09;3!UBERON:0005382;9.27e-09;3!UBERON:0004733;3.34e-08;12!UBERON:0002028;3.34e-08;12!UBERON:0004732;1.40e-07;13!UBERON:0001874;3.50e-07;1!UBERON:0003296;6.45e-07;4!UBERON:0010133;6.45e-07;4!UBERON:0000369;8.95e-07;4!UBERON:0002435;8.95e-07;4!UBERON:0000204;8.95e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,1.90e-54,9;UBERON:0001557,4.81e-25,19;UBERON:0008947,9.90e-18,38;UBERON:0003258,9.90e-18,38;UBERON:0000072,6.11e-14,47;UBERON:0000007,5.20e-13,2;UBERON:0000065,7.22e-12,54;UBERON:0002680,6.40e-11,9;UBERON:0001895,6.40e-11,9;UBERON:0010092,6.40e-11,9;UBERON:0002037,8.98e-10,6;UBERON:0006215,8.98e-10,6;UBERON:0005383,1.09e-08,3;UBERON:0005382,1.09e-08,3;UBERON:0011216,2.06e-08,223;UBERON:0004733,3.21e-08,12;UBERON:0002028,3.21e-08,12;UBERON:0007277,3.21e-08,12;UBERON:0001004,4.09e-08,74;UBERON:0004732,1.35e-07,13;UBERON:0000073,1.83e-07,53;UBERON:0002616,1.83e-07,53;UBERON:0001874,3.40e-07,1;UBERON:0001049,5.35e-07,56;UBERON:0005068,5.35e-07,56;UBERON:0006241,5.35e-07,56;UBERON:0007135,5.35e-07,56;UBERON:0003296,6.26e-07,4;UBERON:0010133,6.26e-07,4;UBERON:0000955,9.29e-07,68;UBERON:0006238,9.29e-07,68 | |||
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| ||
|short_description=p5@BEGAIN | |||
}} | }} |
Latest revision as of 10:39, 18 September 2015
Short description: | p5@BEGAIN |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_BEGAIN_5end |
Coexpression cluster: | NA |
Association with transcript: | -215bp_to_ENST00000443071, ENST00000557378, NM_001159531, uc010txa.1_5end |
EntrezGene: | BEGAIN |
HGNC: | 24163 |
UniProt: | G3V2K4Q9BUH8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mast cell | 5.17e-12 | 5 |
basophil mast progenitor cell | 5.17e-12 | 5 |
endocrine cell | 7.24e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
larynx | 1.90e-54 | 9 |
upper respiratory tract | 4.81e-25 | 19 |
respiratory primordium | 9.90e-18 | 38 |
endoderm of foregut | 9.90e-18 | 38 |
segment of respiratory tract | 6.11e-14 | 47 |
pituitary gland | 5.20e-13 | 2 |
respiratory tract | 7.22e-12 | 54 |
regional part of metencephalon | 6.40e-11 | 9 |
metencephalon | 6.40e-11 | 9 |
future metencephalon | 6.40e-11 | 9 |
cerebellum | 8.98e-10 | 6 |
rhombic lip | 8.98e-10 | 6 |
caudate-putamen | 1.09e-08 | 3 |
dorsal striatum | 1.09e-08 | 3 |
organ system subdivision | 2.06e-08 | 223 |
segmental subdivision of hindbrain | 3.21e-08 | 12 |
hindbrain | 3.21e-08 | 12 |
presumptive hindbrain | 3.21e-08 | 12 |
respiratory system | 4.09e-08 | 74 |
segmental subdivision of nervous system | 1.35e-07 | 13 |
regional part of nervous system | 1.83e-07 | 53 |
regional part of brain | 1.83e-07 | 53 |
putamen | 3.40e-07 | 1 |
neural tube | 5.35e-07 | 56 |
neural rod | 5.35e-07 | 56 |
future spinal cord | 5.35e-07 | 56 |
neural keel | 5.35e-07 | 56 |
gland of diencephalon | 6.26e-07 | 4 |
neuroendocrine gland | 6.26e-07 | 4 |
brain | 9.29e-07 | 68 |
future brain | 9.29e-07 | 68 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 4.62e-10 | 106 |
cell type cancer | 9.66e-08 | 143 |