FFCP PHASE1:Hg19::chr21:40685536..40685591,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr21:40685536..40685591,- to FFCP PHASE1:Hg19::chr21:40685536..40685591,-: NSchange) |
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(9 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=54014 | |EntrezGene=54014 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12760 | |HGNC=12760 | ||
|TSSclassifier=strong | |||
|UniProt=Q6P2D1,E9PEB7,Q9NSI6 | |UniProt=Q6P2D1,E9PEB7,Q9NSI6 | ||
|association_with_transcript=0bp_to_ENST00000341322,ENST00000380783,uc002yxk.1,uc002yxl.2,uc002yxm.2_5end | |||
|cluster_id=chr21:40685536..40685591,- | |||
|description=CAGE_peak_1_at_BRWD1_5end | |||
|id=chr21:40685536..40685591,- | |||
|ontology_enrichment_celltype=CL:0000037!1.09e-15!172;CL:0000566!1.09e-15!172;CL:0002032!8.05e-14!165;CL:0000837!8.05e-14!165;CL:0000988!1.12e-13!182;CL:0000738!1.43e-12!140;CL:0002031!2.91e-09!124;CL:0002087!1.49e-08!119;CL:0000763!4.74e-08!112;CL:0000049!4.74e-08!112;CL:0000791!6.56e-08!18;CL:0000789!6.56e-08!18;CL:0002420!6.56e-08!18;CL:0002419!6.56e-08!18;CL:0000790!6.56e-08!18;CL:0000838!6.80e-07!52 | |||
|ontology_enrichment_celltype_v019=CL:0000791;7.11e-08;18!CL:0000789;7.11e-08;18!CL:0002419;7.11e-08;18 | |||
|ontology_enrichment_celltype_v019_2=CL:0000037,1.29e-16,168;CL:0000988,5.88e-15,177;CL:0002032,1.08e-14,161;CL:0000837,1.08e-14,161;CL:0000738,1.76e-13,136;CL:0002031,4.73e-10,120;CL:0002087,2.56e-09,115;CL:0000763,8.22e-09,108;CL:0000049,8.22e-09,108;CL:0000791,6.56e-08,18;CL:0000789,6.56e-08,18;CL:0002420,6.56e-08,18;CL:0002419,6.56e-08,18;CL:0000790,6.56e-08,18;CL:0000838,6.80e-07,52 | |||
|ontology_enrichment_development_v019=CL:0000790;7.11e-08;18!UBERON:0006601;1.74e-07;82 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!2.79e-27!115;UBERON:0001049!3.92e-19!57;UBERON:0005068!3.92e-19!57;UBERON:0006241!3.92e-19!57;UBERON:0007135!3.92e-19!57;UBERON:0003080!6.93e-18!42;UBERON:0001017!7.97e-18!82;UBERON:0002780!1.28e-17!41;UBERON:0001890!1.28e-17!41;UBERON:0006240!1.28e-17!41;UBERON:0000073!1.78e-17!94;UBERON:0001016!1.78e-17!94;UBERON:0005743!2.59e-17!86;UBERON:0000955!2.70e-16!69;UBERON:0006238!2.70e-16!69;UBERON:0001893!7.00e-16!34;UBERON:0002020!1.95e-15!34;UBERON:0003528!1.95e-15!34;UBERON:0001869!2.51e-15!32;UBERON:0002791!2.85e-15!33;UBERON:0002616!3.85e-15!59;UBERON:0002619!5.22e-13!22;UBERON:0002346!1.84e-12!90;UBERON:0001950!2.75e-12!20;UBERON:0003075!5.65e-12!86;UBERON:0007284!5.65e-12!86;UBERON:0000956!1.95e-11!25;UBERON:0000203!1.95e-11!25;UBERON:0003056!8.03e-10!61;UBERON:0000153!6.57e-08!129;UBERON:0007811!6.57e-08!129;UBERON:0000924!8.57e-07!173;UBERON:0006601!8.57e-07!173 | |||
|ontology_enrichment_uberon_v019=UBERON:0001869;6.66e-14;32!UBERON:0001893;9.30e-14;34!UBERON:0002791;1.51e-13;32!UBERON:0003528;2.20e-13;34!UBERON:0002020;2.20e-13;34!UBERON:0002780;4.36e-13;41!UBERON:0001890;4.36e-13;41!UBERON:0002619;4.94e-13;22!UBERON:0001950;2.79e-12;20!UBERON:0000956;2.18e-11;25!UBERON:0000203;2.18e-11;25!UBERON:0000073;1.88e-10;53!UBERON:0002616;1.88e-10;53!UBERON:0000955;1.04e-08;68!UBERON:0007023;2.64e-08;114!UBERON:0001017;5.85e-08;75!UBERON:0001016;7.26e-08;83 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,6.59e-27,114;UBERON:0001049,7.50e-19,56;UBERON:0005068,7.50e-19,56;UBERON:0006241,7.50e-19,56;UBERON:0007135,7.50e-19,56;UBERON:0000073,9.59e-18,53;UBERON:0002616,9.59e-18,53;UBERON:0001016,1.21e-17,89;UBERON:0002780,1.28e-17,41;UBERON:0001890,1.28e-17,41;UBERON:0003080,1.28e-17,41;UBERON:0006240,1.28e-17,41;UBERON:0001017,1.53e-17,81;UBERON:0000955,5.14e-16,68;UBERON:0006238,5.14e-16,68;UBERON:0001893,7.00e-16,34;UBERON:0003528,1.95e-15,34;UBERON:0002020,1.95e-15,34;UBERON:0001869,2.51e-15,32;UBERON:0002791,7.65e-15,32;UBERON:0002619,5.22e-13,22;UBERON:0001950,2.75e-12,20;UBERON:0002346,1.10e-11,86;UBERON:0000956,1.95e-11,25;UBERON:0000203,1.95e-11,25;UBERON:0003075,3.36e-11,82;UBERON:0007284,3.36e-11,82;UBERON:0003056,6.22e-10,61 | |||
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| ||
|short_description=p1@BRWD1 | |||
}} | }} |
Latest revision as of 11:03, 18 September 2015
Short description: | p1@BRWD1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_BRWD1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000341322, ENST00000380783, uc002yxk.1, uc002yxl.2, uc002yxm.2_5end |
EntrezGene: | BRWD1 |
HGNC: | 12760 |
UniProt: | Q6P2D1E9PEB7Q9NSI6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic stem cell | 1.29e-16 | 168 |
hematopoietic cell | 5.88e-15 | 177 |
hematopoietic oligopotent progenitor cell | 1.08e-14 | 161 |
hematopoietic multipotent progenitor cell | 1.08e-14 | 161 |
leukocyte | 1.76e-13 | 136 |
hematopoietic lineage restricted progenitor cell | 4.73e-10 | 120 |
nongranular leukocyte | 2.56e-09 | 115 |
myeloid cell | 8.22e-09 | 108 |
common myeloid progenitor | 8.22e-09 | 108 |
mature alpha-beta T cell | 6.56e-08 | 18 |
alpha-beta T cell | 6.56e-08 | 18 |
immature T cell | 6.56e-08 | 18 |
mature T cell | 6.56e-08 | 18 |
immature alpha-beta T cell | 6.56e-08 | 18 |
lymphoid lineage restricted progenitor cell | 6.80e-07 | 52 |
Ontology term | p-value | n |
---|---|---|
adult organism | 6.59e-27 | 114 |
neural tube | 7.50e-19 | 56 |
neural rod | 7.50e-19 | 56 |
future spinal cord | 7.50e-19 | 56 |
neural keel | 7.50e-19 | 56 |
regional part of nervous system | 9.59e-18 | 53 |
regional part of brain | 9.59e-18 | 53 |
nervous system | 1.21e-17 | 89 |
regional part of forebrain | 1.28e-17 | 41 |
forebrain | 1.28e-17 | 41 |
anterior neural tube | 1.28e-17 | 41 |
future forebrain | 1.28e-17 | 41 |
central nervous system | 1.53e-17 | 81 |
brain | 5.14e-16 | 68 |
future brain | 5.14e-16 | 68 |
telencephalon | 7.00e-16 | 34 |
brain grey matter | 1.95e-15 | 34 |
gray matter | 1.95e-15 | 34 |
cerebral hemisphere | 2.51e-15 | 32 |
regional part of telencephalon | 7.65e-15 | 32 |
regional part of cerebral cortex | 5.22e-13 | 22 |
neocortex | 2.75e-12 | 20 |
neurectoderm | 1.10e-11 | 86 |
cerebral cortex | 1.95e-11 | 25 |
pallium | 1.95e-11 | 25 |
neural plate | 3.36e-11 | 82 |
presumptive neural plate | 3.36e-11 | 82 |
pre-chordal neural plate | 6.22e-10 | 61 |