FFCP PHASE1:Hg19::chr15:67418119..67418162,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4088 | |EntrezGene=4088 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6769 | |HGNC=6769 | ||
|TSSclassifier=strong | |||
|UniProt=B7Z9Q2,P84022 | |UniProt=B7Z9Q2,P84022 | ||
|association_with_transcript=65bp_to_ENST00000540846,NM_001145102,uc010ujr.1_5end | |association_with_transcript=65bp_to_ENST00000540846,NM_001145102,uc010ujr.1_5end | ||
|cluster_id=chr15:67418119..67418162,+ | |||
|coexpression_cluster_id=C2343 | |||
|description=CAGE_peak_5_at_SMAD3_5end | |description=CAGE_peak_5_at_SMAD3_5end | ||
|id=chr15:67418119..67418162,+ | |id=chr15:67418119..67418162,+ | ||
|ontology_enrichment_celltype=CL:0000066!6.11e-23!254;CL:0000222!5.95e-16!119;CL:0000220!3.34e-15!246;CL:0002321!1.17e-14!248;CL:0000183!1.91e-13!59;CL:0000192!2.45e-13!42;CL:0000514!2.45e-13!42;CL:0000359!1.20e-12!32;CL:0000187!1.67e-12!54;CL:0000680!4.26e-12!57;CL:0000056!4.26e-12!57;CL:0000355!4.26e-12!57;CL:0000548!5.05e-12!679;CL:0000004!5.05e-12!679;CL:0000255!5.05e-12!679;CL:0000012!1.88e-11!682;CL:0000055!1.50e-10!180;CL:0000393!2.19e-09!60;CL:0000211!2.19e-09!60;CL:0000076!2.11e-08!62;CL:0000077!9.87e-08!19 | |ontology_enrichment_celltype=CL:0000066!6.11e-23!254;CL:0000222!5.95e-16!119;CL:0000220!3.34e-15!246;CL:0002321!1.17e-14!248;CL:0000183!1.91e-13!59;CL:0000192!2.45e-13!42;CL:0000514!2.45e-13!42;CL:0000359!1.20e-12!32;CL:0000187!1.67e-12!54;CL:0000680!4.26e-12!57;CL:0000056!4.26e-12!57;CL:0000355!4.26e-12!57;CL:0000548!5.05e-12!679;CL:0000004!5.05e-12!679;CL:0000255!5.05e-12!679;CL:0000012!1.88e-11!682;CL:0000055!1.50e-10!180;CL:0000393!2.19e-09!60;CL:0000211!2.19e-09!60;CL:0000076!2.11e-08!62;CL:0000077!9.87e-08!19 | ||
|ontology_enrichment_celltype_v019=CL:0000359;2.40e-13;32!CL:0000077;9.01e-11;19!CL:0000192;3.66e-09;43!CL:0002494;2.28e-07;16 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,7.31e-23,253;CL:0000359,3.20e-14,32;CL:0000192,4.95e-12,43;CL:0000514,4.95e-12,43;CL:0002321,2.09e-11,250;CL:0000222,2.27e-11,121;CL:0000077,9.94e-11,19;CL:0000187,7.97e-09,55;CL:0000680,1.74e-08,58;CL:0000056,1.74e-08,58;CL:0000355,1.74e-08,58;CL:0000076,6.10e-08,63;CL:0002494,2.18e-07,16;CL:0000393,4.45e-07,61;CL:0000211,4.45e-07,61 | |||
|ontology_enrichment_development_v019=CL:0000514;3.66e-09;43!UBERON:0008947;1.65e-07;29 | |||
|ontology_enrichment_disease=DOID:305!8.36e-11!106;DOID:0050687!2.35e-08!143;DOID:1749!5.97e-07!14 | |ontology_enrichment_disease=DOID:305!8.36e-11!106;DOID:0050687!2.35e-08!143;DOID:1749!5.97e-07!14 | ||
|ontology_enrichment_disease_v019=DOID:1749;1.78e-08;14 | |||
|ontology_enrichment_disease_v019_2=DOID:305,1.98e-16,106;DOID:0050687,2.20e-12,143;DOID:1749,1.55e-08,14;DOID:162,1.51e-07,235;DOID:14566,5.72e-07,239 | |||
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|ontology_enrichment_uberon_v019=UBERON:0004573;7.47e-10;33!UBERON:0004571;7.47e-10;33!UBERON:0001637;4.36e-09;42!UBERON:0003509;4.36e-09;42!UBERON:0004572;4.36e-09;42!UBERON:0005911;8.34e-09;36!UBERON:0000072;1.60e-08;37!UBERON:0001737;1.63e-08;9!UBERON:0001557;1.63e-08;9 | |||
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| ||
|short_description=p5@SMAD3 | |short_description=p5@SMAD3 | ||
}} | }} |
Latest revision as of 17:17, 18 September 2015
Short description: | p5@SMAD3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_SMAD3_5end |
Coexpression cluster: | C2343_squamous_malignant_meningioma_embryonic_mesothelioma_bile_papillotubular |
Association with transcript: | 65bp_to_ENST00000540846, NM_001145102, uc010ujr.1_5end |
EntrezGene: | SMAD3 |
HGNC: | 6769 |
UniProt: | B7Z9Q2P84022 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 7.31e-23 | 253 |
vascular associated smooth muscle cell | 3.20e-14 | 32 |
smooth muscle cell | 4.95e-12 | 43 |
smooth muscle myoblast | 4.95e-12 | 43 |
embryonic cell | 2.09e-11 | 250 |
mesodermal cell | 2.27e-11 | 121 |
mesothelial cell | 9.94e-11 | 19 |
muscle cell | 7.97e-09 | 55 |
muscle precursor cell | 1.74e-08 | 58 |
myoblast | 1.74e-08 | 58 |
multi-potent skeletal muscle stem cell | 1.74e-08 | 58 |
squamous epithelial cell | 6.10e-08 | 63 |
cardiocyte | 2.18e-07 | 16 |
electrically responsive cell | 4.45e-07 | 61 |
electrically active cell | 4.45e-07 | 61 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 1.98e-16 | 106 |
cell type cancer | 2.20e-12 | 143 |
squamous cell carcinoma | 1.55e-08 | 14 |
cancer | 1.51e-07 | 235 |
disease of cellular proliferation | 5.72e-07 | 239 |