FFCP PHASE1:Hg19::chr3:50192537..50192563,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr3:50192537..50192563,+ to FFCP PHASE1:Hg19::chr3:50192537..50192563,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6405 | |EntrezGene=6405 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10728 | |HGNC=10728 | ||
|TSSclassifier=strong | |||
|UniProt=Q13275 | |UniProt=Q13275 | ||
|association_with_transcript=0bp_to_ENST00000002829_5end | |||
|cluster_id=chr3:50192537..50192563,+ | |||
|coexpression_cluster_id=C1927 | |||
|description=CAGE_peak_3_at_SEMA3F_5end | |||
|id=chr3:50192537..50192563,+ | |||
|ontology_enrichment_celltype=CL:0000066!2.80e-39!254;CL:0000220!2.13e-22!246;CL:0002321!3.59e-22!248;CL:0000076!6.46e-15!62;CL:0002139!4.78e-13!24;CL:0002078!5.01e-13!44;CL:0000115!7.48e-13!35;CL:0000213!1.56e-12!57;CL:0000215!1.56e-12!57;CL:0002076!1.65e-11!43;CL:0000223!2.36e-11!59;CL:0000071!5.04e-11!18;CL:0002546!5.04e-11!18;CL:0000222!3.85e-10!119;CL:1000449!8.84e-09!16;CL:1000497!4.39e-08!18;CL:0002518!4.39e-08!18;CL:0002159!1.04e-07!13;CL:0002681!2.51e-07!13;CL:0002584!2.51e-07!13;CL:1000413!6.71e-07!9 | |||
|ontology_enrichment_celltype_v019=CL:0002139;3.75e-14;24!CL:0000115;5.58e-13;36!CL:0000071;5.25e-12;18!CL:0002078;1.41e-10;45!CL:0002076;2.49e-09;42!CL:0000213;2.97e-09;58!CL:0000215;2.97e-09;58!CL:1000449;3.37e-09;15!CL:0000076;7.86e-09;63!CL:1000497;1.13e-08;17!CL:0002518;1.13e-08;17!CL:0002159;1.19e-08;14!CL:0002681;1.38e-07;12!CL:0002584;1.38e-07;12!CL:1000413;1.83e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,9.84e-41,253;CL:0002321,3.22e-23,250;CL:0000076,2.65e-16,63;CL:0002078,2.32e-15,45;CL:0000115,2.67e-15,36;CL:0000213,2.87e-14,58;CL:0000215,2.87e-14,58;CL:0002139,3.88e-14,24;CL:0000071,6.37e-12,18;CL:0002546,6.37e-12,18;CL:0002076,2.89e-11,42;CL:0000222,3.81e-11,121;CL:0000223,4.53e-11,58;CL:1000449,3.75e-09,15;CL:0002159,1.13e-08,14;CL:1000497,1.26e-08,17;CL:0002518,1.26e-08,17;CL:0002681,1.46e-07,12;CL:0002584,1.46e-07,12;CL:1000413,2.07e-07,9;CL:0002077,3.63e-07,34 | |||
|ontology_enrichment_development_v019=CL:0002546;5.25e-12;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000468!4.71e-22!659;UBERON:0000483!4.14e-21!309;UBERON:0000119!2.92e-20!312;UBERON:0000467!6.55e-20!625;UBERON:0000480!1.45e-19!626;UBERON:0000477!1.18e-18!286;UBERON:0000481!8.15e-18!347;UBERON:0000922!4.65e-17!612;UBERON:0003914!1.12e-16!118;UBERON:0002050!8.64e-16!605;UBERON:0005423!8.64e-16!605;UBERON:0000923!1.75e-15!604;UBERON:0005291!1.75e-15!604;UBERON:0006598!1.75e-15!604;UBERON:0002532!1.75e-15!604;UBERON:0004111!5.19e-15!241;UBERON:0000475!1.82e-12!365;UBERON:0002049!3.99e-12!79;UBERON:0007798!3.99e-12!79;UBERON:0004872!5.08e-12!84;UBERON:0009569!1.81e-11!113;UBERON:0000055!3.15e-11!69;UBERON:0004119!3.39e-11!169;UBERON:0000925!3.39e-11!169;UBERON:0006595!3.39e-11!169;UBERON:0001986!5.04e-11!18;UBERON:0004638!5.04e-11!18;UBERON:0004852!5.04e-11!18;UBERON:0000025!5.28e-11!194;UBERON:0001981!9.55e-11!60;UBERON:0007500!9.55e-11!60;UBERON:0004537!9.55e-11!60;UBERON:0006965!9.55e-11!60;UBERON:0003104!9.77e-11!238;UBERON:0009142!9.77e-11!238;UBERON:0003103!3.22e-10!69;UBERON:0000062!4.45e-10!511;UBERON:0005177!1.36e-09!107;UBERON:0000080!2.07e-09!18;UBERON:0002120!2.07e-09!18;UBERON:0004875!2.07e-09!18;UBERON:0005721!2.07e-09!18;UBERON:0005754!2.07e-09!18;UBERON:0007297!2.07e-09!18;UBERON:0006914!3.70e-09!25;UBERON:0001048!4.07e-09!168;UBERON:0003887!5.01e-09!21;UBERON:0006555!5.33e-09!17;UBERON:0005103!5.33e-09!17;UBERON:0000083!5.33e-09!17;UBERON:0009201!5.33e-09!17;UBERON:0004819!5.33e-09!17;UBERON:0006553!5.33e-09!17;UBERON:0003074!5.33e-09!17;UBERON:0003060!5.33e-09!17;UBERON:0001444!5.83e-09!48;UBERON:0001008!6.00e-09!45;UBERON:0004211!8.84e-09!16;UBERON:0001285!8.84e-09!16;UBERON:0007684!8.84e-09!16;UBERON:0003220!8.84e-09!16;UBERON:0004208!8.84e-09!16;UBERON:0005085!9.34e-09!29;UBERON:0000064!9.82e-09!219;UBERON:0002113!1.10e-08!27;UBERON:0003918!1.10e-08!27;UBERON:0005095!1.10e-08!27;UBERON:0007687!1.10e-08!27;UBERON:0006554!1.22e-08!44;UBERON:0000490!1.26e-08!138;UBERON:0004876!1.74e-08!20;UBERON:0001004!2.03e-08!72;UBERON:0000487!2.41e-08!22;UBERON:0005172!3.94e-08!55;UBERON:0005173!3.94e-08!55;UBERON:0002100!4.69e-08!216;UBERON:0001637!1.73e-07!42;UBERON:0003509!1.73e-07!42;UBERON:0004572!1.73e-07!42;UBERON:0000970!1.77e-07!20;UBERON:0000020!2.18e-07!23;UBERON:0001225!2.51e-07!13;UBERON:0008987!2.51e-07!13;UBERON:0002104!2.83e-07!21;UBERON:0001007!2.85e-07!155;UBERON:0001555!2.85e-07!155;UBERON:0007026!2.85e-07!155;UBERON:0001032!3.23e-07!24;UBERON:0004456!3.23e-07!24;UBERON:0000353!3.24e-07!17;UBERON:0004573!4.10e-07!33;UBERON:0004571!4.10e-07!33;UBERON:0000489!4.56e-07!32;UBERON:0000019!6.01e-07!19;UBERON:0000047!6.01e-07!19;UBERON:0004088!6.01e-07!19;UBERON:0003072!6.01e-07!19;UBERON:0003071!6.01e-07!19;UBERON:0004128!6.01e-07!19;UBERON:0003915!6.71e-07!9;UBERON:0004700!6.71e-07!9;UBERON:0001917!6.71e-07!9;UBERON:0001456!8.67e-07!21;UBERON:0000915!9.88e-07!52 | |||
|ontology_enrichment_uberon_v019=UBERON:0004638;5.25e-12;18!UBERON:0001986;5.25e-12;18!UBERON:0004852;5.25e-12;18!UBERON:0006554;3.64e-10;30!UBERON:0001008;3.64e-10;30!UBERON:0000490;4.16e-10;33!UBERON:0006914;4.42e-10;25!UBERON:0006555;3.37e-09;15!UBERON:0004819;3.37e-09;15!UBERON:0001285;3.37e-09;15!UBERON:0007684;3.37e-09;15!UBERON:0000487;3.54e-09;22!UBERON:0002113;3.38e-08;24!UBERON:0011143;3.38e-08;24!UBERON:0000353;3.63e-08;15!UBERON:0000020;5.44e-08;23!UBERON:0000970;6.43e-08;20!UBERON:0010371;7.30e-08;31!UBERON:0001032;8.37e-08;24!UBERON:0004456;8.37e-08;24!UBERON:0003914;9.20e-08;74!UBERON:0002104;1.06e-07;21!UBERON:0001225;1.38e-07;12!UBERON:0008987;1.38e-07;12!UBERON:0003915;1.83e-07;9!UBERON:0004700;1.83e-07;9!UBERON:0001917;1.83e-07;9!UBERON:0000483;2.39e-07;136!UBERON:0000019;2.47e-07;19!UBERON:0000047;2.47e-07;19!UBERON:0004088;2.47e-07;19!UBERON:0010230;2.47e-07;19!UBERON:0001456;2.69e-07;21!UBERON:0004573;2.92e-07;33!UBERON:0004571;2.92e-07;33!UBERON:0001637;7.60e-07;42!UBERON:0003509;7.60e-07;42!UBERON:0004572;7.60e-07;42 | |||
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| ||
|short_description=p3@SEMA3F | |||
}} | }} |
Latest revision as of 18:11, 18 September 2015
Short description: | p3@SEMA3F |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_SEMA3F_5end |
Coexpression cluster: | C1927_Corneal_Esophageal_Urothelial_Endothelial_Bronchial_Sebocyte_Tracheal |
Association with transcript: | 0bp_to_ENST00000002829_5end |
EntrezGene: | SEMA3F |
HGNC: | 10728 |
UniProt: | Q13275 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 9.84e-41 | 253 |
embryonic cell | 3.22e-23 | 250 |
squamous epithelial cell | 2.65e-16 | 63 |
meso-epithelial cell | 2.32e-15 | 45 |
endothelial cell | 2.67e-15 | 36 |
lining cell | 2.87e-14 | 58 |
barrier cell | 2.87e-14 | 58 |
endothelial cell of vascular tree | 3.88e-14 | 24 |
blood vessel endothelial cell | 6.37e-12 | 18 |
embryonic blood vessel endothelial progenitor cell | 6.37e-12 | 18 |
endo-epithelial cell | 2.89e-11 | 42 |
mesodermal cell | 3.81e-11 | 121 |
endodermal cell | 4.53e-11 | 58 |
epithelial cell of nephron | 3.75e-09 | 15 |
general ecto-epithelial cell | 1.13e-08 | 14 |
kidney cell | 1.26e-08 | 17 |
kidney epithelial cell | 1.26e-08 | 17 |
kidney cortical cell | 1.46e-07 | 12 |
renal cortical epithelial cell | 1.46e-07 | 12 |
endothelial cell of artery | 2.07e-07 | 9 |
ecto-epithelial cell | 3.63e-07 | 34 |