FFCP PHASE1:Hg19::chr2:182545296..182545307,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4760 | |EntrezGene=4760 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7762 | |HGNC=7762 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-22bp_to_ENST00000496876_5end | |association_with_transcript=-22bp_to_ENST00000496876_5end | ||
|cluster_id=chr2:182545296..182545307,- | |||
|coexpression_cluster_id=C939 | |coexpression_cluster_id=C939 | ||
|description=CAGE_peak_3_at_NEUROD1_5end | |description=CAGE_peak_3_at_NEUROD1_5end | ||
|id=chr2:182545296..182545307,- | |id=chr2:182545296..182545307,- | ||
|ontology_enrichment_celltype=CL:0002319!3.88e-10!25;CL:0000047!9.96e-09!8 | |ontology_enrichment_celltype=CL:0002319!3.88e-10!25;CL:0000047!9.96e-09!8 | ||
|ontology_enrichment_celltype_v019=CL:0000540;1.37e-07;6!CL:0000404;1.37e-07;6!CL:0002319;1.78e-07;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000047,2.16e-09,8;CL:0000540,1.36e-07,6;CL:0000031,1.36e-07,6;CL:0000404,1.36e-07,6;CL:0002319,1.75e-07,25 | |||
|ontology_enrichment_development_v019=UBERON:0006215;8.51e-16;3!UBERON:0006238;2.48e-10;10!CL:0000031;1.37e-07;6 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!2.03e-64!82;UBERON:0005743!1.07e-63!86;UBERON:0000073!4.53e-62!94;UBERON:0001016!4.53e-62!94;UBERON:0000955!1.67e-52!69;UBERON:0006238!1.67e-52!69;UBERON:0001049!3.57e-52!57;UBERON:0005068!3.57e-52!57;UBERON:0006241!3.57e-52!57;UBERON:0007135!3.57e-52!57;UBERON:0002619!2.76e-48!22;UBERON:0002616!3.20e-47!59;UBERON:0000956!3.66e-46!25;UBERON:0000203!3.66e-46!25;UBERON:0002780!4.03e-44!41;UBERON:0001890!4.03e-44!41;UBERON:0006240!4.03e-44!41;UBERON:0001950!3.57e-43!20;UBERON:0003080!6.58e-43!42;UBERON:0001893!1.89e-42!34;UBERON:0001869!7.35e-42!32;UBERON:0002791!2.55e-40!33;UBERON:0003075!4.61e-40!86;UBERON:0007284!4.61e-40!86;UBERON:0002346!5.09e-40!90;UBERON:0002020!9.51e-36!34;UBERON:0003528!9.51e-36!34;UBERON:0000924!1.05e-32!173;UBERON:0006601!1.05e-32!173;UBERON:0004121!3.10e-32!169;UBERON:0003056!5.23e-32!61;UBERON:0000033!3.13e-28!123;UBERON:0000153!2.01e-26!129;UBERON:0007811!2.01e-26!129;UBERON:0007023!1.12e-25!115;UBERON:0001871!2.80e-16!7;UBERON:0002021!4.74e-14!5;UBERON:0001872!5.44e-14!5;UBERON:0000349!8.19e-14!5;UBERON:0000200!2.82e-11!6;UBERON:0000025!1.64e-10!194;UBERON:0004733!1.73e-10!12;UBERON:0002028!1.73e-10!12;UBERON:0007277!1.73e-10!12;UBERON:0003076!1.86e-10!15;UBERON:0003057!1.86e-10!15;UBERON:0004732!1.35e-09!13;UBERON:0002771!4.86e-09!3;UBERON:0002037!3.40e-08!6;UBERON:0006215!3.40e-08!6;UBERON:0002680!9.20e-08!9;UBERON:0001895!9.20e-08!9;UBERON:0010092!9.20e-08!9;UBERON:0000064!1.15e-07!219;UBERON:0004111!2.57e-07!241;UBERON:0000483!2.83e-07!309;UBERON:0001905!3.02e-07!2;UBERON:0002757!3.02e-07!2;UBERON:0010134!3.02e-07!2;UBERON:0002784!3.02e-07!2;UBERON:0005408!3.02e-07!2;UBERON:0001899!3.02e-07!2;UBERON:0003296!4.08e-07!4;UBERON:0010133!4.08e-07!4;UBERON:0000119!4.17e-07!312;UBERON:0001954!9.34e-07!2;UBERON:0003022!9.34e-07!2;UBERON:0002421!9.34e-07!2;UBERON:0002600!9.34e-07!2 | |ontology_enrichment_uberon=UBERON:0001017!2.03e-64!82;UBERON:0005743!1.07e-63!86;UBERON:0000073!4.53e-62!94;UBERON:0001016!4.53e-62!94;UBERON:0000955!1.67e-52!69;UBERON:0006238!1.67e-52!69;UBERON:0001049!3.57e-52!57;UBERON:0005068!3.57e-52!57;UBERON:0006241!3.57e-52!57;UBERON:0007135!3.57e-52!57;UBERON:0002619!2.76e-48!22;UBERON:0002616!3.20e-47!59;UBERON:0000956!3.66e-46!25;UBERON:0000203!3.66e-46!25;UBERON:0002780!4.03e-44!41;UBERON:0001890!4.03e-44!41;UBERON:0006240!4.03e-44!41;UBERON:0001950!3.57e-43!20;UBERON:0003080!6.58e-43!42;UBERON:0001893!1.89e-42!34;UBERON:0001869!7.35e-42!32;UBERON:0002791!2.55e-40!33;UBERON:0003075!4.61e-40!86;UBERON:0007284!4.61e-40!86;UBERON:0002346!5.09e-40!90;UBERON:0002020!9.51e-36!34;UBERON:0003528!9.51e-36!34;UBERON:0000924!1.05e-32!173;UBERON:0006601!1.05e-32!173;UBERON:0004121!3.10e-32!169;UBERON:0003056!5.23e-32!61;UBERON:0000033!3.13e-28!123;UBERON:0000153!2.01e-26!129;UBERON:0007811!2.01e-26!129;UBERON:0007023!1.12e-25!115;UBERON:0001871!2.80e-16!7;UBERON:0002021!4.74e-14!5;UBERON:0001872!5.44e-14!5;UBERON:0000349!8.19e-14!5;UBERON:0000200!2.82e-11!6;UBERON:0000025!1.64e-10!194;UBERON:0004733!1.73e-10!12;UBERON:0002028!1.73e-10!12;UBERON:0007277!1.73e-10!12;UBERON:0003076!1.86e-10!15;UBERON:0003057!1.86e-10!15;UBERON:0004732!1.35e-09!13;UBERON:0002771!4.86e-09!3;UBERON:0002037!3.40e-08!6;UBERON:0006215!3.40e-08!6;UBERON:0002680!9.20e-08!9;UBERON:0001895!9.20e-08!9;UBERON:0010092!9.20e-08!9;UBERON:0000064!1.15e-07!219;UBERON:0004111!2.57e-07!241;UBERON:0000483!2.83e-07!309;UBERON:0001905!3.02e-07!2;UBERON:0002757!3.02e-07!2;UBERON:0010134!3.02e-07!2;UBERON:0002784!3.02e-07!2;UBERON:0005408!3.02e-07!2;UBERON:0001899!3.02e-07!2;UBERON:0003296!4.08e-07!4;UBERON:0010133!4.08e-07!4;UBERON:0000119!4.17e-07!312;UBERON:0001954!9.34e-07!2;UBERON:0003022!9.34e-07!2;UBERON:0002421!9.34e-07!2;UBERON:0002600!9.34e-07!2 | ||
|ontology_enrichment_uberon_v019=UBERON:0002619;1.64e-40;22!UBERON:0000956;1.89e-35;25!UBERON:0000203;1.89e-35;25!UBERON:0001950;2.46e-33;20!UBERON:0002791;2.11e-23;32!UBERON:0001869;2.36e-23;32!UBERON:0003528;1.19e-21;34!UBERON:0002020;1.19e-21;34!UBERON:0001893;3.78e-21;34!UBERON:0002780;6.13e-21;41!UBERON:0001890;6.13e-21;41!UBERON:0000073;2.30e-18;53!UBERON:0002616;2.30e-18;53!UBERON:0000955;9.95e-17;68!UBERON:0001016;2.03e-15;83!UBERON:0002021;1.03e-14;5!UBERON:0001872;1.56e-14;5!UBERON:0001017;2.89e-14;75!UBERON:0001905;7.58e-11;2!UBERON:0002757;7.58e-11;2!UBERON:0010134;7.58e-11;2!UBERON:0005408;7.58e-11;2!UBERON:0001899;7.58e-11;2!UBERON:0001954;5.45e-10;2!UBERON:0003022;5.45e-10;2!UBERON:0002421;5.45e-10;2!UBERON:0002600;5.45e-10;2!UBERON:0000349;9.13e-09;5!UBERON:0002037;4.19e-08;6!UBERON:0011216;2.59e-07;132!UBERON:0002114;6.23e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,4.73e-43,81;UBERON:0001016,3.47e-41,89;UBERON:0002619,2.26e-40,22;UBERON:0000956,2.51e-35,25;UBERON:0000203,2.51e-35,25;UBERON:0000955,3.03e-35,68;UBERON:0006238,3.03e-35,68;UBERON:0001950,3.58e-33,20;UBERON:0000073,2.62e-29,53;UBERON:0002616,2.62e-29,53;UBERON:0001049,1.62e-27,56;UBERON:0005068,1.62e-27,56;UBERON:0006241,1.62e-27,56;UBERON:0007135,1.62e-27,56;UBERON:0002780,3.61e-27,41;UBERON:0001890,3.61e-27,41;UBERON:0003080,3.61e-27,41;UBERON:0006240,3.61e-27,41;UBERON:0002791,4.03e-27,32;UBERON:0001869,4.03e-27,32;UBERON:0003528,2.22e-25,34;UBERON:0002020,2.22e-25,34;UBERON:0001893,2.22e-25,34;UBERON:0004121,5.46e-20,171;UBERON:0000924,5.46e-20,171;UBERON:0006601,5.46e-20,171;UBERON:0003056,1.65e-19,61;UBERON:0003075,1.67e-19,82;UBERON:0007284,1.67e-19,82;UBERON:0011216,1.23e-18,223;UBERON:0002346,2.21e-18,86;UBERON:0010371,5.26e-16,104;UBERON:0002021,1.33e-14,5;UBERON:0001872,1.77e-14,5;UBERON:0010314,1.44e-11,132;UBERON:0007023,2.57e-11,114;UBERON:0001905,7.77e-11,2;UBERON:0002757,7.77e-11,2;UBERON:0010134,7.77e-11,2;UBERON:0005408,7.77e-11,2;UBERON:0001899,7.77e-11,2;UBERON:0001954,4.86e-10,2;UBERON:0003022,4.86e-10,2;UBERON:0002421,4.86e-10,2;UBERON:0002600,4.86e-10,2;UBERON:0000349,8.31e-09,5;UBERON:0002037,4.19e-08,6;UBERON:0006215,4.19e-08,6;UBERON:0002114,7.36e-07,2 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0,0,0.286235987131057,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.261958150995425,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254094624222463,1.30139853857622,3.86644406388848,3.35032530668698,4.46557126157214,0,0,0,0,0,0,0,0,0,0,0,0,0,0.664225598535437,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.114814448164607,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.994147647766298,3.65740482667333,0,0,0.211125408127993,0,0,9.82537716631677,0,0,0,0,0,0,0,0,0,1.93866549219044,2.04089815956073,3.99227596002388,0,0,0,0,0,0,4.82640722538051,6.9985107211981,7.11862479226498,0,0,24.4130778107333,23.3322238454884,13.8907380908167,1.53569778007781,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0.134802265961354,0,0,0,0,0,0,0,2.44858209304392,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.58186518546373,0,0,0.886351143382302,0,0,0,0,0,0,4.63306494227304,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.18091875923721,1.90684768556206,0,0,0,0,0,1.21499113316049,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.732157589411779,2.003054891304,0,0.998361463831671,0.248385611765534,4.42715631795939,0,0,0,0,0.468334905806882,1.88397337194073,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.48865185073115,0,0,0,0,0,0,0,0,0.516644938982447,0,0,0,0,9.59207784777388,0,0,0.218419276384028,0,0.850299680406731,0,0,0,0,1.60114149657094,0,0,0.128458450192919,2.8339315265117,1.27707087245721,0.82046545696302,8.3183659753167,1.03735878696327,1.45328081068666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.607838261565552,2.34323429584154,1.86018116851066,1.14148458349032,3.28184885410932,0,0,0,0,8.57122937405259,9.07966049990825,0,0.227662191351298,0,0,0,0.0679697329768317,0.920818829879887,0,0,0,0,0,0,0,0,0.285906176706625,6.32054446930906,0.116241425368125,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11.9370465096821,0,0,11.4338137415246,0,0.0771741581079447,0,0,0,0,0.196308467114945,0,0,0,0,0,0,0,0,0,0,0,0,0,0.475940431336403,3.49080552272302,1.0580536810308,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0,0,0.286235987131057,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.261958150995425,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254094624222463,1.30139853857622,3.86644406388848,3.35032530668698,4.46557126157214,0,0,0,0,0,0,0,0,0,0,0,0,0,0.664225598535437,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.114814448164607,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.994147647766298,3.65740482667333,0,0,0.211125408127993,0,0,9.82537716631677,0,0,0,0,0,0,0,0,0,1.93866549219044,2.04089815956073,3.99227596002388,0,0,0,0,0,0,4.82640722538051,6.9985107211981,7.11862479226498,0,0,24.4130778107333,23.3322238454884,13.8907380908167,1.53569778007781,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0.134802265961354,0,0,0,0,0,0,0,2.44858209304392,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.58186518546373,0,0,0.886351143382302,0,0,0,0,0,0,4.63306494227304,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.18091875923721,1.90684768556206,0,0,0,0,0,1.21499113316049,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.732157589411779,2.003054891304,0,0.998361463831671,0.248385611765534,4.42715631795939,0,0,0,0,0.468334905806882,1.88397337194073,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.48865185073115,0,0,0,0,0,0,0,0,0.516644938982447,0,0,0,0,9.59207784777388,0,0,0.218419276384028,0,0.850299680406731,0,0,0,0,1.60114149657094,0,0,0.128458450192919,2.8339315265117,1.27707087245721,0.82046545696302,8.3183659753167,1.03735878696327,1.45328081068666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.607838261565552,2.34323429584154,1.86018116851066,1.14148458349032,3.28184885410932,0,0,0,0,8.57122937405259,9.07966049990825,0,0.227662191351298,0,0,0,0.0679697329768317,0.920818829879887,0,0,0,0,0,0,0,0,0.285906176706625,6.32054446930906,0.116241425368125,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11.9370465096821,0,0,11.4338137415246,0,0.0771741581079447,0,0,0,0,0.196308467114945,0,0,0,0,0,0,0,0,0,0,0,0,0,0.475940431336403,3.49080552272302,1.0580536810308,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p3@NEUROD1 | |short_description=p3@NEUROD1 | ||
}} | }} |
Latest revision as of 21:24, 18 September 2015
Short description: | p3@NEUROD1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_NEUROD1_5end |
Coexpression cluster: | C939_neuroblastoma_argyrophil_small_cerebellum_retinoblastoma_pineal_medulloblastoma |
Association with transcript: | -22bp_to_ENST00000496876_5end |
EntrezGene: | NEUROD1 |
HGNC: | 7762 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuronal stem cell | 2.16e-09 | 8 |
neuron | 1.36e-07 | 6 |
neuroblast | 1.36e-07 | 6 |
electrically signaling cell | 1.36e-07 | 6 |
neural cell | 1.75e-07 | 25 |