FFCP PHASE1:Hg19::chr5:87974286..87974293,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC=42810 | |HGNC=42810 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-21bp_to_ENST00000513026_5end | |association_with_transcript=-21bp_to_ENST00000513026_5end | ||
|cluster_id=chr5:87974286..87974293,- | |||
|coexpression_cluster_id=C10 | |coexpression_cluster_id=C10 | ||
|description=CAGE_peak_13_at_LINC00461_5end | |description=CAGE_peak_13_at_LINC00461_5end | ||
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|ontology_enrichment_celltype=CL:0000128!1.78e-16!7;CL:0000126!1.78e-16!7;CL:0000127!1.78e-16!7;CL:0002453!1.78e-16!7;CL:0002319!5.35e-15!25;CL:0000047!1.26e-14!8;CL:0002605!8.05e-11!3;CL:0002603!2.98e-10!3;CL:0000540!4.35e-09!6;CL:0000031!4.35e-09!6;CL:0000404!4.35e-09!6 | |ontology_enrichment_celltype=CL:0000128!1.78e-16!7;CL:0000126!1.78e-16!7;CL:0000127!1.78e-16!7;CL:0002453!1.78e-16!7;CL:0002319!5.35e-15!25;CL:0000047!1.26e-14!8;CL:0002605!8.05e-11!3;CL:0002603!2.98e-10!3;CL:0000540!4.35e-09!6;CL:0000031!4.35e-09!6;CL:0000404!4.35e-09!6 | ||
|ontology_enrichment_celltype_v019=CL:0002605;8.35e-29;3!CL:0002319;4.38e-27;25!CL:0000128;1.06e-21;7!CL:0000126;1.06e-21;7!CL:0000127;1.06e-21;7!CL:0000047;4.66e-20;2!CL:0000540;7.05e-15;6!CL:0000404;7.05e-15;6!CL:0000243;4.47e-09;15!CL:0000125;4.47e-09;15!CL:0000095;3.87e-08;17 | |ontology_enrichment_celltype_v019=CL:0002605;8.35e-29;3!CL:0002319;4.38e-27;25!CL:0000128;1.06e-21;7!CL:0000126;1.06e-21;7!CL:0000127;1.06e-21;7!CL:0000047;4.66e-20;2!CL:0000540;7.05e-15;6!CL:0000404;7.05e-15;6!CL:0000243;4.47e-09;15!CL:0000125;4.47e-09;15!CL:0000095;3.87e-08;17 | ||
|ontology_enrichment_celltype_v019_2=CL:0000047,1.36e-29,8;CL:0002605,1.11e-28,3;CL:0002319,5.72e-27,25;CL:0000128,1.63e-21,7;CL:0000126,1.63e-21,7;CL:0000127,1.63e-21,7;CL:0002453,1.63e-21,7;CL:0000540,6.12e-15,6;CL:0000031,6.12e-15,6;CL:0000404,6.12e-15,6;CL:0000133,2.78e-11,59;CL:0000221,4.38e-09,72;CL:0000243,5.30e-09,15;CL:0000125,5.30e-09,15;CL:0000030,5.30e-09,15;CL:0000339,5.30e-09,15;CL:0000095,4.51e-08,17;CL:0000123,4.51e-08,17 | |||
|ontology_enrichment_development_v019=CL:0000031;7.05e-15;6!CL:0000339;4.47e-09;15!CL:0000133;8.85e-08;59 | |ontology_enrichment_development_v019=CL:0000031;7.05e-15;6!CL:0000339;4.47e-09;15!CL:0000133;8.85e-08;59 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
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|short_description=p13@LINC00461 | |short_description=p13@LINC00461 | ||
}} | }} |
Latest revision as of 03:12, 19 September 2015
Short description: | p13@LINC00461 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_13_at_LINC00461_5end |
Coexpression cluster: | C10_occipital_temporal_parietal_brain_duodenum_Neurons_Neural |
Association with transcript: | -21bp_to_ENST00000513026_5end |
EntrezGene: | NA |
HGNC: | 42810 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuronal stem cell | 1.36e-29 | 8 |
astrocyte of the cerebral cortex | 1.11e-28 | 3 |
neural cell | 5.72e-27 | 25 |
oligodendrocyte | 1.63e-21 | 7 |
macroglial cell | 1.63e-21 | 7 |
astrocyte | 1.63e-21 | 7 |
oligodendrocyte precursor cell | 1.63e-21 | 7 |
neuron | 6.12e-15 | 6 |
neuroblast | 6.12e-15 | 6 |
electrically signaling cell | 6.12e-15 | 6 |
neurectodermal cell | 2.78e-11 | 59 |
ectodermal cell | 4.38e-09 | 72 |
glial cell (sensu Vertebrata) | 5.30e-09 | 15 |
glial cell | 5.30e-09 | 15 |
glioblast | 5.30e-09 | 15 |
glioblast (sensu Vertebrata) | 5.30e-09 | 15 |
neuron associated cell | 4.51e-08 | 17 |
neuron associated cell (sensu Vertebrata) | 4.51e-08 | 17 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 2.25e-30 | 81 |
nervous system | 3.72e-27 | 89 |
cerebral cortex | 2.39e-17 | 25 |
pallium | 2.39e-17 | 25 |
neural tube | 3.96e-15 | 56 |
neural rod | 3.96e-15 | 56 |
future spinal cord | 3.96e-15 | 56 |
neural keel | 3.96e-15 | 56 |
brain | 9.19e-15 | 68 |
future brain | 9.19e-15 | 68 |
regional part of telencephalon | 1.59e-13 | 32 |
cerebral hemisphere | 1.59e-13 | 32 |
ectoderm-derived structure | 4.05e-13 | 171 |
ectoderm | 4.05e-13 | 171 |
presumptive ectoderm | 4.05e-13 | 171 |
regional part of nervous system | 5.10e-13 | 53 |
regional part of brain | 5.10e-13 | 53 |
brain grey matter | 1.03e-12 | 34 |
gray matter | 1.03e-12 | 34 |
telencephalon | 1.03e-12 | 34 |
organ system subdivision | 2.61e-12 | 223 |
regional part of forebrain | 1.78e-10 | 41 |
forebrain | 1.78e-10 | 41 |
anterior neural tube | 1.78e-10 | 41 |
future forebrain | 1.78e-10 | 41 |
neural plate | 6.19e-10 | 82 |
presumptive neural plate | 6.19e-10 | 82 |
neurectoderm | 2.07e-09 | 86 |
ecto-epithelium | 1.52e-07 | 104 |
cerebellum | 4.30e-07 | 6 |
rhombic lip | 4.30e-07 | 6 |
regional part of cerebral cortex | 5.59e-07 | 22 |
pre-chordal neural plate | 7.37e-07 | 61 |