FFCP PHASE1:Hg19::chr12:54673871..54673925,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr12:54673871..54673925,- to FFCP PHASE1:Hg19::chr12:54673871..54673925,-: NSchange) |
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(9 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=23468 | |EntrezGene=23468 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1555 | |HGNC=1555 | ||
|TSSclassifier=strong | |||
|UniProt=P45973 | |UniProt=P45973 | ||
|association_with_transcript=0bp_to_ENST00000209875,NM_012117,uc001sfi.3,uc001sfk.3_5end | |||
|cluster_id=chr12:54673871..54673925,- | |||
|description=CAGE_peak_1_at_CBX5_5end | |||
|id=chr12:54673871..54673925,- | |||
|ontology_enrichment_celltype=CL:0002319!1.07e-07!25 | |||
|ontology_enrichment_celltype_v019=CL:0002319;1.06e-07;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0002319,1.07e-07,25 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:162!9.41e-18!235;DOID:14566!7.91e-17!239;DOID:0050686!9.80e-12!137;DOID:2531!4.44e-09!51;DOID:0060083!4.44e-09!51;DOID:0050687!3.65e-08!143;DOID:1240!1.12e-07!39 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:162,9.41e-18,235;DOID:14566,7.91e-17,239;DOID:0050686,9.80e-12,137;DOID:2531,4.44e-09,51;DOID:0060083,4.44e-09,51;DOID:0050687,3.65e-08,143;DOID:1240,1.12e-07,39 | |||
|ontology_enrichment_uberon=UBERON:0000073!4.95e-23!94;UBERON:0001016!4.95e-23!94;UBERON:0005743!1.89e-20!86;UBERON:0001017!4.97e-20!82;UBERON:0000924!2.27e-17!173;UBERON:0006601!2.27e-17!173;UBERON:0000955!7.98e-17!69;UBERON:0006238!7.98e-17!69;UBERON:0004121!9.30e-17!169;UBERON:0002346!1.96e-16!90;UBERON:0003075!7.03e-16!86;UBERON:0007284!7.03e-16!86;UBERON:0001049!6.80e-15!57;UBERON:0005068!6.80e-15!57;UBERON:0006241!6.80e-15!57;UBERON:0007135!6.80e-15!57;UBERON:0000153!1.71e-14!129;UBERON:0007811!1.71e-14!129;UBERON:0002616!6.80e-14!59;UBERON:0000033!1.13e-13!123;UBERON:0002780!8.98e-13!41;UBERON:0001890!8.98e-13!41;UBERON:0006240!8.98e-13!41;UBERON:0003056!1.08e-12!61;UBERON:0003080!4.51e-12!42;UBERON:0001893!4.62e-11!34;UBERON:0002020!8.73e-11!34;UBERON:0003528!8.73e-11!34;UBERON:0002791!1.06e-10!33;UBERON:0001869!1.33e-10!32;UBERON:0000956!1.79e-08!25;UBERON:0000203!1.79e-08!25;UBERON:0002619!5.41e-07!22 | |||
|ontology_enrichment_uberon_v019=UBERON:0001893;1.03e-09;34!UBERON:0001869;1.24e-09;32!UBERON:0002780;1.64e-09;41!UBERON:0001890;1.64e-09;41!UBERON:0003528;1.74e-09;34!UBERON:0002020;1.74e-09;34!UBERON:0002791;1.90e-09;32!UBERON:0000073;4.40e-09;53!UBERON:0002616;4.40e-09;53!UBERON:0001016;8.73e-09;83!UBERON:0001017;9.88e-09;75!UBERON:0000956;1.86e-08;25!UBERON:0000203;1.86e-08;25!UBERON:0000955;2.75e-08;68!UBERON:0002619;5.62e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,2.98e-23,89;UBERON:0001017,1.13e-20,81;UBERON:0000955,1.85e-17,68;UBERON:0006238,1.85e-17,68;UBERON:0004121,6.31e-17,171;UBERON:0000924,6.31e-17,171;UBERON:0006601,6.31e-17,171;UBERON:0002346,2.11e-16,86;UBERON:0003075,7.42e-16,82;UBERON:0007284,7.42e-16,82;UBERON:0001049,1.46e-15,56;UBERON:0005068,1.46e-15,56;UBERON:0006241,1.46e-15,56;UBERON:0007135,1.46e-15,56;UBERON:0000073,1.07e-14,53;UBERON:0002616,1.07e-14,53;UBERON:0011216,1.55e-14,223;UBERON:0003056,1.66e-13,61;UBERON:0002780,8.98e-13,41;UBERON:0001890,8.98e-13,41;UBERON:0003080,8.98e-13,41;UBERON:0006240,8.98e-13,41;UBERON:0010314,1.85e-11,132;UBERON:0001893,4.62e-11,34;UBERON:0010371,5.34e-11,104;UBERON:0003528,8.73e-11,34;UBERON:0002020,8.73e-11,34;UBERON:0001869,1.33e-10,32;UBERON:0002791,2.51e-10,32;UBERON:0000956,1.79e-08,25;UBERON:0000203,1.79e-08,25;UBERON:0002619,5.41e-07,22 | |||
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| ||
|short_description=p1@CBX5 | |||
}} | }} |
Latest revision as of 05:34, 19 September 2015
Short description: | p1@CBX5 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_CBX5_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000209875, NM_012117, uc001sfi.3, uc001sfk.3_5end |
EntrezGene: | CBX5 |
HGNC: | 1555 |
UniProt: | P45973 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 1.07e-07 | 25 |
Ontology term | p-value | n |
---|---|---|
nervous system | 2.98e-23 | 89 |
central nervous system | 1.13e-20 | 81 |
brain | 1.85e-17 | 68 |
future brain | 1.85e-17 | 68 |
ectoderm-derived structure | 6.31e-17 | 171 |
ectoderm | 6.31e-17 | 171 |
presumptive ectoderm | 6.31e-17 | 171 |
neurectoderm | 2.11e-16 | 86 |
neural plate | 7.42e-16 | 82 |
presumptive neural plate | 7.42e-16 | 82 |
neural tube | 1.46e-15 | 56 |
neural rod | 1.46e-15 | 56 |
future spinal cord | 1.46e-15 | 56 |
neural keel | 1.46e-15 | 56 |
regional part of nervous system | 1.07e-14 | 53 |
regional part of brain | 1.07e-14 | 53 |
organ system subdivision | 1.55e-14 | 223 |
pre-chordal neural plate | 1.66e-13 | 61 |
regional part of forebrain | 8.98e-13 | 41 |
forebrain | 8.98e-13 | 41 |
anterior neural tube | 8.98e-13 | 41 |
future forebrain | 8.98e-13 | 41 |
structure with developmental contribution from neural crest | 1.85e-11 | 132 |
telencephalon | 4.62e-11 | 34 |
ecto-epithelium | 5.34e-11 | 104 |
brain grey matter | 8.73e-11 | 34 |
gray matter | 8.73e-11 | 34 |
cerebral hemisphere | 1.33e-10 | 32 |
regional part of telencephalon | 2.51e-10 | 32 |
cerebral cortex | 1.79e-08 | 25 |
pallium | 1.79e-08 | 25 |
regional part of cerebral cortex | 5.41e-07 | 22 |
Ontology term | p-value | n |
---|---|---|
cancer | 9.41e-18 | 235 |
disease of cellular proliferation | 7.91e-17 | 239 |
organ system cancer | 9.80e-12 | 137 |
hematologic cancer | 4.44e-09 | 51 |
immune system cancer | 4.44e-09 | 51 |
cell type cancer | 3.65e-08 | 143 |
leukemia | 1.12e-07 | 39 |