FFCP PHASE1:Hg19::chr3:64211017..64211036,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr3:64211017..64211036,- to FFCP PHASE1:Hg19::chr3:64211017..64211036,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=166336 | |EntrezGene=166336 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=20340 | |HGNC=20340 | ||
|TSSclassifier=strong | |||
|UniProt=Q7Z3G6 | |UniProt=Q7Z3G6 | ||
|association_with_transcript=94bp_to_ENST00000295902,NM_198859,uc003dmf.2_5end | |||
|cluster_id=chr3:64211017..64211036,- | |||
|description=CAGE_peak_8_at_PRICKLE2_5end | |||
|id=chr3:64211017..64211036,- | |||
|ontology_enrichment_celltype=CL:0000055!1.73e-08!180 | |||
|ontology_enrichment_celltype_v019=CL:0002567;1.02e-13;3!CL:0000148;3.15e-07;10!CL:0002605;6.71e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002567,6.98e-14,3;CL:0000148,2.91e-07,10;CL:0000541,2.91e-07,10;CL:0000333,8.05e-07,41;CL:0002605,8.76e-07,3 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!8.36e-17!115;UBERON:0001017!9.22e-17!82;UBERON:0005743!5.15e-16!86;UBERON:0003075!1.05e-14!86;UBERON:0007284!1.05e-14!86;UBERON:0001049!3.90e-14!57;UBERON:0005068!3.90e-14!57;UBERON:0006241!3.90e-14!57;UBERON:0007135!3.90e-14!57;UBERON:0002346!9.85e-14!90;UBERON:0000073!1.03e-13!94;UBERON:0001016!1.03e-13!94;UBERON:0000955!1.20e-13!69;UBERON:0006238!1.20e-13!69;UBERON:0002616!2.91e-13!59;UBERON:0002780!5.05e-11!41;UBERON:0001890!5.05e-11!41;UBERON:0006240!5.05e-11!41;UBERON:0000475!1.07e-10!365;UBERON:0003080!1.65e-10!42;UBERON:0003056!3.03e-10!61;UBERON:0000119!4.70e-10!312;UBERON:0000025!4.87e-10!194;UBERON:0000483!6.01e-10!309;UBERON:0001893!8.72e-10!34;UBERON:0002020!1.05e-09!34;UBERON:0003528!1.05e-09!34;UBERON:0004111!3.29e-09!241;UBERON:0002791!4.25e-09!33;UBERON:0001869!5.94e-09!32;UBERON:0004121!8.66e-09!169;UBERON:0000477!1.74e-08!286;UBERON:0000924!2.13e-08!173;UBERON:0006601!2.13e-08!173;UBERON:0000033!4.75e-08!123;UBERON:0000153!6.71e-08!129;UBERON:0007811!6.71e-08!129 | |||
|ontology_enrichment_uberon_v019=UBERON:0000956;3.87e-15;25!UBERON:0000203;3.87e-15;25!UBERON:0001869;5.11e-15;32!UBERON:0001893;2.96e-14;34!UBERON:0002791;7.20e-13;32!UBERON:0001950;2.99e-12;20!UBERON:0003528;4.48e-11;34!UBERON:0002020;4.48e-11;34!UBERON:0002619;4.52e-11;22!UBERON:0002780;1.94e-10;41!UBERON:0001890;1.94e-10;41!UBERON:0000073;2.09e-07;53!UBERON:0002616;2.09e-07;53!UBERON:0001017;2.89e-07;75!UBERON:0000200;4.48e-07;6!UBERON:0001870;7.88e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001869,7.08e-17,32;UBERON:0001017,1.98e-16,81;UBERON:0000955,4.15e-16,68;UBERON:0006238,4.15e-16,68;UBERON:0001893,9.20e-16,34;UBERON:0000956,3.01e-15,25;UBERON:0000203,3.01e-15,25;UBERON:0002780,5.71e-15,41;UBERON:0001890,5.71e-15,41;UBERON:0003080,5.71e-15,41;UBERON:0006240,5.71e-15,41;UBERON:0003075,1.48e-14,82;UBERON:0007284,1.48e-14,82;UBERON:0003056,1.50e-14,61;UBERON:0001016,2.33e-14,89;UBERON:0002791,4.48e-14,32;UBERON:0001049,6.08e-14,56;UBERON:0005068,6.08e-14,56;UBERON:0006241,6.08e-14,56;UBERON:0007135,6.08e-14,56;UBERON:0002346,1.11e-13,86;UBERON:0003528,3.85e-13,34;UBERON:0002020,3.85e-13,34;UBERON:0000073,7.59e-13,53;UBERON:0002616,7.59e-13,53;UBERON:0001950,2.02e-12,20;UBERON:0010371,6.20e-12,104;UBERON:0010314,7.22e-12,132;UBERON:0002619,3.18e-11,22;UBERON:0004121,7.85e-09,171;UBERON:0000924,7.85e-09,171;UBERON:0006601,7.85e-09,171;UBERON:0000200,3.73e-07,6;UBERON:0001870,7.80e-07,3 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.738726348460727,0,0,3.14859585844162,1.09499540058307,0.376627918784408,0.305653622991805,0.0821005894499457,0.393553906568396,0,0,0,0,0,0,0,0,0,0,0,0.217010870715852,0,0,0,0,0,0,0,0,0,0.28769239232215,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.853460445133014,0.800791974072025,0,0.661044872784862,0,0.569212969109448,0,0,0,0,0.263384084775077,0,0,0,0,0,0,0,0,0.294605907474837,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0.50133791063589,0.144846518960824,0,0,0.945348171640679,0,0.087834785693126,0.589405839739707,0,0,0,0,0,0,0,0,0.596287222100115,0,0.694281003215189,0,0,0.275118041940067,0,0,0,0,0,0,0,0.367663080345869,0,0.446498641420399,0.673588117878509,0.450445921933289,0,0,0.183201743930407,0,0,0,0,0,0.264818361626438,0.286836620748814,0,0,2.1349799145941,0,0,0.404132016209064,0.653847612453835,0.605429710579726,0,0.234321431833797,0.312160076830321,0,0.149448680551801,0,0.323745888736263,0.421352420106746,0,0,0,0,0.494533858557114,0,0,0,0,0,0,0,0.300476117813194,0.453728732640084,0.538168907066586,0.427114777637135,0,0,0.103052529238439,1.03056216018252,0,2.19409231913646,0.194874010322397,1.00973509697646,0.644349290496095,0.161646056818812,0.355009592516614,0.403008392910561,0.847802961552438,0,0,0,0.121973706129595,0,0,0,0,0,1.56449532329816,0,0,0.464367928031979,0,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,0,0,0,0,0,0,0.171567810298526,0,0,0,0,0.651616610620649,0,1.44331342025273,1.73895607462615,0,0.144366447761074,0.462985512576611,0,0,0.858486162094873,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.03193261734941,2.67391897890794,1.17217447210047,1.71072446022705,0.411309970813294,0.300343057843917,0.571652865261156,0.112131084345361,0,0.1466765716419,0.129271715757778,0,0,0,0,0,0,0,0.285955987316295,0,0,0,0.355391948742546,0,0,0,0,0,0,0,0.239624855491583,0,0,0.144781306667579,0,0.179060963239896,0,0,0,0.256686072559497,1.77866236955724,0,0.773288812777695,0.335032530668698,0.637938751653163,0,0,0,0,0,0,0,0.178428988797162,0.315404830067869,0,0,0,0,0,0,0.868836144680828,0.391602314925481,0.343143423810856,0,0.215714200818617,0,0,0,0,0,0.306923946576125,0.280660094433074,0,0,0,0,0.308419387605311,0,0.574890092096664,0,0.348631135379878,0,0,0,0.229628896329213,0.182091168006717,0.262248829918848,0,0.385076685522074,0,1.46139224653261,0.211103257785751,0,0,0.431831832204279,0,0,0,0,0,0,0,0,0,0,0,0.309123034943167,0.732555718546747,0.907604499126468,0,0,0,0.386682873168488,0,0.15350367472613,0,0.214840489736547,0.145016693914229,0.255679882248303,0.623224249527161,0,0,0,0,0.464845549297286,0,0,0.616067160352178,1.06461206063404,0,0.18532421910392,0.143124886741991,1.116475108079,0.316379424718726,0,0,0,0.95460974377781,0.78494864019923,0,0,0.117812402345686,0.202182481573316,0,0.842516912477962,0,0.487426979262569,0,0.409499734223957,0.424216295861138,0,0,0.66343897524122,0,0,0,0.811641507850816,0,0,0.717056761020258,0,0.7133421029625,0.354761064070598,0,0.329294892959902,0.379473173765715,0,0,0,0,0.188287601553558,0,0,0,0,0,0,0,0,0.411362273086194,0,0.540031437238115,0,0,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293016358543788,0,0.111443384277478,2.27308917445131,0.23874448473769,0.296964680832639,0.614321404198464,0,0.844016498463076,0,1.48323486804084,0,0,0.276283915531148,0,8.89737537768747,0.246169610922139,0.311039587661807,0.179736702294654,0,0,0.0986434056369336,0,0,0.969332746095218,1.39152147242777,0,0,0,0,0,0,0,0,0,0,0.885741385813839,0.241192877250816,0,0.331737779793674,0,0.87754158861589,0,0,1.00035336054936,1.70913083770502,0,0,0,0,0.732780747214898,0,0,0,0,0,0,0,0,0,0.421996129056054,0,0,0,0,0,0,0,0,0,0.741412462787447,0.802577647298789,0.468528891450678,0,0.19566461893209,0.242780379534093,1.97292201424695,0,0,0.442306057399416,0,0,0,0,0,0,0.284609546029793,0.277349346026277,0,0,0,0.52418000472609,0.171986032471617,0,0,0,0,0.529536760149002,0.90392296312213,0.548167698587004,0.596143835108969,2.84898581801454,0,0.160317640503067,0.213452994739353,0.19980960958213,0,0,0,0,0,0,0,0,0.815985741090574,0,0,0.547621515567972,0,0,0.525774708558629,1.11712960508902,0.458320848023367,0,0.199679000498991,0,0.223171457441873,0.201550417460179,0.360299883542404,0,0,0,0,0.590564889088493,0.338693328263138,0,0.136203406111576,0,0.137539436597234,0,0,0,3.28047605953333,0,0.551639951094387,0.786818822024972,0,0,0,0,0,0,0,0,0,0,0,0.851940108927109,0,0.293104467356165,0,0.775697738169303,0.92562821219883,1.53978154095896,0,0.213574825135389,0.157204305099666,0.414239055347196,0,0.988058159489721,0,0.638341257770182,0,0.2506898940227,0.306345576763462,0.327872630709804,0,0,0.732157589411779,1.251909307065,0.573409195690071,0.776503360757966,1.24192805882767,0,0,0.909894705249887,0,0,0,0,0.149254802886874,0.701139929541673,0.554805861502613,0,0.251567901752575,0.889811221596536,0.686520205190771,0.151230923763239,0.310874401165561,0.295710299979268,0.318593534327405,0,0,0,0,1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| ||
|short_description=p8@PRICKLE2 | |||
}} | }} |
Latest revision as of 09:14, 19 September 2015
Short description: | p8@PRICKLE2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_PRICKLE2_5end |
Coexpression cluster: | NA |
Association with transcript: | 94bp_to_ENST00000295902, NM_198859, uc003dmf.2_5end |
EntrezGene: | PRICKLE2 |
HGNC: | 20340 |
UniProt: | Q7Z3G6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
light melanocyte | 6.98e-14 | 3 |
melanocyte | 2.91e-07 | 10 |
melanoblast | 2.91e-07 | 10 |
migratory neural crest cell | 8.05e-07 | 41 |
astrocyte of the cerebral cortex | 8.76e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
cerebral hemisphere | 7.08e-17 | 32 |
central nervous system | 1.98e-16 | 81 |
brain | 4.15e-16 | 68 |
future brain | 4.15e-16 | 68 |
telencephalon | 9.20e-16 | 34 |
cerebral cortex | 3.01e-15 | 25 |
pallium | 3.01e-15 | 25 |
regional part of forebrain | 5.71e-15 | 41 |
forebrain | 5.71e-15 | 41 |
anterior neural tube | 5.71e-15 | 41 |
future forebrain | 5.71e-15 | 41 |
neural plate | 1.48e-14 | 82 |
presumptive neural plate | 1.48e-14 | 82 |
pre-chordal neural plate | 1.50e-14 | 61 |
nervous system | 2.33e-14 | 89 |
regional part of telencephalon | 4.48e-14 | 32 |
neural tube | 6.08e-14 | 56 |
neural rod | 6.08e-14 | 56 |
future spinal cord | 6.08e-14 | 56 |
neural keel | 6.08e-14 | 56 |
neurectoderm | 1.11e-13 | 86 |
brain grey matter | 3.85e-13 | 34 |
gray matter | 3.85e-13 | 34 |
regional part of nervous system | 7.59e-13 | 53 |
regional part of brain | 7.59e-13 | 53 |
neocortex | 2.02e-12 | 20 |
ecto-epithelium | 6.20e-12 | 104 |
structure with developmental contribution from neural crest | 7.22e-12 | 132 |
regional part of cerebral cortex | 3.18e-11 | 22 |
ectoderm-derived structure | 7.85e-09 | 171 |
ectoderm | 7.85e-09 | 171 |
presumptive ectoderm | 7.85e-09 | 171 |
gyrus | 3.73e-07 | 6 |
frontal cortex | 7.80e-07 | 3 |