FFCP PHASE1:Hg19::chr10:7860460..7860497,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr10:7860460..7860497,+ to FFCP PHASE1:Hg19::chr10:7860460..7860497,+: NSchange) |
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(9 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=83860 | |EntrezGene=83860 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17303 | |HGNC=17303 | ||
|TSSclassifier=strong | |||
|UniProt=Q5VWG9 | |UniProt=Q5VWG9 | ||
|association_with_transcript=0bp_to_ENST00000344293_5end | |||
|cluster_id=chr10:7860460..7860497,+ | |||
|description=CAGE_peak_1_at_TAF3_5end | |||
|id=chr10:7860460..7860497,+ | |||
|ontology_enrichment_celltype=CL:0000037!2.57e-16!172;CL:0000566!2.57e-16!172;CL:0000738!2.78e-15!140;CL:0002032!4.96e-14!165;CL:0000837!4.96e-14!165;CL:0002031!9.10e-14!124;CL:0000988!1.16e-13!182;CL:0000542!2.47e-13!53;CL:0000051!2.47e-13!53;CL:0000838!3.38e-13!52;CL:0002087!1.31e-12!119;CL:0000791!7.01e-09!18;CL:0000789!7.01e-09!18;CL:0002420!7.01e-09!18;CL:0002419!7.01e-09!18;CL:0000790!7.01e-09!18;CL:0000084!3.40e-08!25;CL:0000827!3.40e-08!25 | |||
|ontology_enrichment_celltype_v019=CL:0000791;6.85e-09;18!CL:0000789;6.85e-09;18!CL:0002419;6.85e-09;18!CL:0000084;4.39e-08;25!CL:0000542;6.06e-08;53 | |||
|ontology_enrichment_celltype_v019_2=CL:0000037,9.55e-17,168;CL:0000738,8.82e-16,136;CL:0002032,2.01e-14,161;CL:0000837,2.01e-14,161;CL:0000988,2.44e-14,177;CL:0002031,2.83e-14,120;CL:0000542,2.47e-13,53;CL:0000051,2.47e-13,53;CL:0000838,3.38e-13,52;CL:0002087,4.28e-13,115;CL:0000791,7.01e-09,18;CL:0000789,7.01e-09,18;CL:0002420,7.01e-09,18;CL:0002419,7.01e-09,18;CL:0000790,7.01e-09,18;CL:0000084,3.40e-08,25;CL:0000827,3.40e-08,25 | |||
|ontology_enrichment_development_v019=CL:0000790;6.85e-09;18!CL:0000051;6.06e-08;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.44e-30!115;UBERON:0001049!3.72e-15!57;UBERON:0005068!3.72e-15!57;UBERON:0006241!3.72e-15!57;UBERON:0007135!3.72e-15!57;UBERON:0001017!9.93e-13!82;UBERON:0003080!1.43e-12!42;UBERON:0002780!1.76e-12!41;UBERON:0001890!1.76e-12!41;UBERON:0006240!1.76e-12!41;UBERON:0000955!1.91e-11!69;UBERON:0006238!1.91e-11!69;UBERON:0002616!2.39e-11!59;UBERON:0005743!2.73e-11!86;UBERON:0000073!7.36e-11!94;UBERON:0001016!7.36e-11!94;UBERON:0002020!1.00e-10!34;UBERON:0003528!1.00e-10!34;UBERON:0001893!1.77e-10!34;UBERON:0002791!3.26e-10!33;UBERON:0001869!1.58e-09!32;UBERON:0003075!3.85e-09!86;UBERON:0007284!3.85e-09!86;UBERON:0002346!1.77e-08!90;UBERON:0002619!1.61e-07!22;UBERON:0000956!3.00e-07!25;UBERON:0000203!3.00e-07!25;UBERON:0001950!8.74e-07!20 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;1.68e-09;41!UBERON:0001890;1.68e-09;41!UBERON:0003528;6.15e-09;34!UBERON:0002020;6.15e-09;34!UBERON:0002791;6.37e-09;32!UBERON:0001893;6.96e-09;34!UBERON:0007023;7.11e-09;114!UBERON:0000073;1.16e-08;53!UBERON:0002616;1.16e-08;53!UBERON:0001869;1.34e-08;32!UBERON:0002619;1.71e-07;22!UBERON:0000956;3.39e-07;25!UBERON:0000203;3.39e-07;25!UBERON:0001950;8.73e-07;20 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,4.96e-30,114;UBERON:0001049,4.72e-15,56;UBERON:0005068,4.72e-15,56;UBERON:0006241,4.72e-15,56;UBERON:0007135,4.72e-15,56;UBERON:0000073,7.33e-14,53;UBERON:0002616,7.33e-14,53;UBERON:0001017,1.33e-12,81;UBERON:0002780,1.76e-12,41;UBERON:0001890,1.76e-12,41;UBERON:0003080,1.76e-12,41;UBERON:0006240,1.76e-12,41;UBERON:0001016,4.86e-12,89;UBERON:0000955,2.53e-11,68;UBERON:0006238,2.53e-11,68;UBERON:0003528,1.00e-10,34;UBERON:0002020,1.00e-10,34;UBERON:0001893,1.77e-10,34;UBERON:0002791,9.10e-10,32;UBERON:0001869,1.58e-09,32;UBERON:0003075,6.83e-09,82;UBERON:0007284,6.83e-09,82;UBERON:0002346,3.18e-08,86;UBERON:0002619,1.61e-07,22;UBERON:0000956,3.00e-07,25;UBERON:0000203,3.00e-07,25;UBERON:0001950,8.74e-07,20 | |||
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| ||
|short_description=p1@TAF3 | |||
}} | }} |
Latest revision as of 10:00, 19 September 2015
Short description: | p1@TAF3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_TAF3_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000344293_5end |
EntrezGene: | TAF3 |
HGNC: | 17303 |
UniProt: | Q5VWG9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic stem cell | 9.55e-17 | 168 |
leukocyte | 8.82e-16 | 136 |
hematopoietic oligopotent progenitor cell | 2.01e-14 | 161 |
hematopoietic multipotent progenitor cell | 2.01e-14 | 161 |
hematopoietic cell | 2.44e-14 | 177 |
hematopoietic lineage restricted progenitor cell | 2.83e-14 | 120 |
lymphocyte | 2.47e-13 | 53 |
common lymphoid progenitor | 2.47e-13 | 53 |
lymphoid lineage restricted progenitor cell | 3.38e-13 | 52 |
nongranular leukocyte | 4.28e-13 | 115 |
mature alpha-beta T cell | 7.01e-09 | 18 |
alpha-beta T cell | 7.01e-09 | 18 |
immature T cell | 7.01e-09 | 18 |
mature T cell | 7.01e-09 | 18 |
immature alpha-beta T cell | 7.01e-09 | 18 |
T cell | 3.40e-08 | 25 |
pro-T cell | 3.40e-08 | 25 |
Ontology term | p-value | n |
---|---|---|
adult organism | 4.96e-30 | 114 |
neural tube | 4.72e-15 | 56 |
neural rod | 4.72e-15 | 56 |
future spinal cord | 4.72e-15 | 56 |
neural keel | 4.72e-15 | 56 |
regional part of nervous system | 7.33e-14 | 53 |
regional part of brain | 7.33e-14 | 53 |
central nervous system | 1.33e-12 | 81 |
regional part of forebrain | 1.76e-12 | 41 |
forebrain | 1.76e-12 | 41 |
anterior neural tube | 1.76e-12 | 41 |
future forebrain | 1.76e-12 | 41 |
nervous system | 4.86e-12 | 89 |
brain | 2.53e-11 | 68 |
future brain | 2.53e-11 | 68 |
brain grey matter | 1.00e-10 | 34 |
gray matter | 1.00e-10 | 34 |
telencephalon | 1.77e-10 | 34 |
regional part of telencephalon | 9.10e-10 | 32 |
cerebral hemisphere | 1.58e-09 | 32 |
neural plate | 6.83e-09 | 82 |
presumptive neural plate | 6.83e-09 | 82 |
neurectoderm | 3.18e-08 | 86 |
regional part of cerebral cortex | 1.61e-07 | 22 |
cerebral cortex | 3.00e-07 | 25 |
pallium | 3.00e-07 | 25 |
neocortex | 8.74e-07 | 20 |