FFCP PHASE1:Hg19::chr1:85118103..85118107,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=117178 | |EntrezGene=117178 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16509 | |HGNC=16509 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=16bp_to_ENST00000490476_5end | |association_with_transcript=16bp_to_ENST00000490476_5end | ||
|cluster_id=chr1:85118103..85118107,- | |||
|coexpression_cluster_id=C15 | |coexpression_cluster_id=C15 | ||
|description=CAGE_peak_6_at_SSX2IP_5end | |description=CAGE_peak_6_at_SSX2IP_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0002605;1.58e-12;3!CL:0000128;2.92e-09;7!CL:0000126;2.92e-09;7!CL:0000127;2.92e-09;7!CL:0000243;7.70e-08;15!CL:0000125;7.70e-08;15!CL:0000095;5.98e-07;17 | |ontology_enrichment_celltype_v019=CL:0002605;1.58e-12;3!CL:0000128;2.92e-09;7!CL:0000126;2.92e-09;7!CL:0000127;2.92e-09;7!CL:0000243;7.70e-08;15!CL:0000125;7.70e-08;15!CL:0000095;5.98e-07;17 | ||
|ontology_enrichment_celltype_v019_2=CL:0002605,9.82e-13,3;CL:0000128,3.14e-09,7;CL:0000126,3.14e-09,7;CL:0000127,3.14e-09,7;CL:0002453,3.14e-09,7;CL:0000243,5.97e-08,15;CL:0000125,5.97e-08,15;CL:0000030,5.97e-08,15;CL:0000339,5.97e-08,15;CL:0000095,4.78e-07,17;CL:0000123,4.78e-07,17 | |||
|ontology_enrichment_development_v019=CL:0000339;7.70e-08;15 | |ontology_enrichment_development_v019=CL:0000339;7.70e-08;15 | ||
|ontology_enrichment_disease=DOID:14566!6.52e-09!239;DOID:162!2.37e-08!235;DOID:0050686!4.76e-08!137 | |ontology_enrichment_disease=DOID:14566!6.52e-09!239;DOID:162!2.37e-08!235;DOID:0050686!4.76e-08!137 | ||
|ontology_enrichment_disease_v019=DOID:1036;4.12e-08;8 | |ontology_enrichment_disease_v019=DOID:1036;4.12e-08;8 | ||
|ontology_enrichment_disease_v019_2=DOID:1036,5.52e-08,8 | |||
|ontology_enrichment_uberon=UBERON:0002020!2.75e-13!34;UBERON:0003528!2.75e-13!34;UBERON:0002791!8.66e-13!33;UBERON:0001893!8.91e-13!34;UBERON:0002780!1.72e-12!41;UBERON:0001890!1.72e-12!41;UBERON:0006240!1.72e-12!41;UBERON:0001869!3.13e-12!32;UBERON:0003080!7.04e-12!42;UBERON:0001049!2.76e-11!57;UBERON:0005068!2.76e-11!57;UBERON:0006241!2.76e-11!57;UBERON:0007135!2.76e-11!57;UBERON:0002346!2.19e-10!90;UBERON:0000956!4.04e-10!25;UBERON:0000203!4.04e-10!25;UBERON:0000955!5.49e-10!69;UBERON:0006238!5.49e-10!69;UBERON:0001017!7.28e-10!82;UBERON:0000073!3.09e-09!94;UBERON:0001016!3.09e-09!94;UBERON:0005743!3.38e-09!86;UBERON:0002616!3.67e-09!59;UBERON:0003075!3.75e-09!86;UBERON:0007284!3.75e-09!86;UBERON:0003056!9.17e-09!61;UBERON:0001950!2.45e-08!20;UBERON:0002619!4.02e-08!22;UBERON:0000153!7.44e-07!129;UBERON:0007811!7.44e-07!129 | |ontology_enrichment_uberon=UBERON:0002020!2.75e-13!34;UBERON:0003528!2.75e-13!34;UBERON:0002791!8.66e-13!33;UBERON:0001893!8.91e-13!34;UBERON:0002780!1.72e-12!41;UBERON:0001890!1.72e-12!41;UBERON:0006240!1.72e-12!41;UBERON:0001869!3.13e-12!32;UBERON:0003080!7.04e-12!42;UBERON:0001049!2.76e-11!57;UBERON:0005068!2.76e-11!57;UBERON:0006241!2.76e-11!57;UBERON:0007135!2.76e-11!57;UBERON:0002346!2.19e-10!90;UBERON:0000956!4.04e-10!25;UBERON:0000203!4.04e-10!25;UBERON:0000955!5.49e-10!69;UBERON:0006238!5.49e-10!69;UBERON:0001017!7.28e-10!82;UBERON:0000073!3.09e-09!94;UBERON:0001016!3.09e-09!94;UBERON:0005743!3.38e-09!86;UBERON:0002616!3.67e-09!59;UBERON:0003075!3.75e-09!86;UBERON:0007284!3.75e-09!86;UBERON:0003056!9.17e-09!61;UBERON:0001950!2.45e-08!20;UBERON:0002619!4.02e-08!22;UBERON:0000153!7.44e-07!129;UBERON:0007811!7.44e-07!129 | ||
|ontology_enrichment_uberon_v019=UBERON:0000956;2.58e-20;25!UBERON:0000203;2.58e-20;25!UBERON:0002791;1.56e-19;32!UBERON:0003528;1.59e-16;34!UBERON:0002020;1.59e-16;34!UBERON:0001869;1.82e-16;32!UBERON:0001893;5.77e-16;34!UBERON:0001950;1.39e-14;20!UBERON:0002619;3.60e-13;22!UBERON:0002780;2.36e-11;41!UBERON:0001890;2.36e-11;41!UBERON:0000073;1.59e-08;53!UBERON:0002616;1.59e-08;53!UBERON:0002108;5.50e-08;4!UBERON:0002021;5.50e-08;5 | |ontology_enrichment_uberon_v019=UBERON:0000956;2.58e-20;25!UBERON:0000203;2.58e-20;25!UBERON:0002791;1.56e-19;32!UBERON:0003528;1.59e-16;34!UBERON:0002020;1.59e-16;34!UBERON:0001869;1.82e-16;32!UBERON:0001893;5.77e-16;34!UBERON:0001950;1.39e-14;20!UBERON:0002619;3.60e-13;22!UBERON:0002780;2.36e-11;41!UBERON:0001890;2.36e-11;41!UBERON:0000073;1.59e-08;53!UBERON:0002616;1.59e-08;53!UBERON:0002108;5.50e-08;4!UBERON:0002021;5.50e-08;5 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002791,1.50e-21,32;UBERON:0000956,1.27e-20,25;UBERON:0000203,1.27e-20,25;UBERON:0003528,3.94e-20,34;UBERON:0002020,3.94e-20,34;UBERON:0001893,3.94e-20,34;UBERON:0001869,1.39e-18,32;UBERON:0002780,3.11e-16,41;UBERON:0001890,3.11e-16,41;UBERON:0003080,3.11e-16,41;UBERON:0006240,3.11e-16,41;UBERON:0000955,8.46e-15,68;UBERON:0006238,8.46e-15,68;UBERON:0001950,8.78e-15,20;UBERON:0000073,7.21e-14,53;UBERON:0002616,7.21e-14,53;UBERON:0002619,2.38e-13,22;UBERON:0003056,2.78e-13,61;UBERON:0001049,5.89e-13,56;UBERON:0005068,5.89e-13,56;UBERON:0006241,5.89e-13,56;UBERON:0007135,5.89e-13,56;UBERON:0001017,8.09e-12,81;UBERON:0003075,2.29e-10,82;UBERON:0007284,2.29e-10,82;UBERON:0001016,2.95e-10,89;UBERON:0002346,1.03e-09,86;UBERON:0002108,3.58e-08,4;UBERON:0002021,4.24e-08,5;UBERON:0010371,2.08e-07,104 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.331397375727916,0,0,0,0,0,0,0,1.14494394852423,1.50561867580173,1.88313959392204,0.305653622991805,0.164201178899891,0.157421562627358,0,0,0.154816123316076,0,0,0,0.387336002901508,0.568676929949686,0.587200878669695,0,0.601633342410425,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.329851300186716,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112328631146495,0,0.16072558669708,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32171328579026,0,0.263384084775077,0.590129310341499,0.786021525498329,0,0,0,0,0,0,0,0,0.270803863765016,0,0.130059347559878,0,0,0,0,0,0,0.339928028092699,0,0.34362744548263,0,0.318565414324097,0,0.950452044448374,0,0,0,0,0,0.403213486449465,0.534880391567015,0.579297615531196,0,0,0,0.361439152384566,0,0.289693037921647,0,0,0.378139268656271,0,0.351339142772504,0.523916301990851,0,0,0,0,0,0.476981248610684,0,0,0.198762407366705,0,0,0,0.419499436209906,0,0,0,0,0,0,0,0,0,0,0.0892997282840798,0,0,0,0,0.183201743930407,0,0,0,0,0,0,0.860509862246441,0,0,0,0,0,0.134710672069688,0.490385709340376,0,0,0,0,0,0.149448680551801,0.117434498643765,0.323745888736263,0.140450806702248,0.204154171254893,0.368502951935304,0.103325781175765,0,0.247266929278557,0,0,0.505008341862199,0.250237039743928,0.277064115484183,0,0,0,0,0.179389635688862,0.213557388818567,0,0,0.206105058476878,0.257640540045629,0,0.506328996723799,0.68205903612839,0.504867548488229,0,0.161646056818812,0.710019185033229,0,0.339121184620975,0,0,0,0.121973706129595,0.397589304964456,0.116193942869518,0.10366105501537,0.252320850875628,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0.237270619111097,0,0,0,0,0,0,0,1.26755034821831,0,0.590789906681404,0.882926198829301,0,0.343135620597051,0,0,0,0.0925884451585296,0,1.03993478527958,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207328115540772,0.144119953416961,0,0,0,0,0,0.102827492703324,0,0,0.112131084345361,0,0,0.129271715757778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199945982364114,0,0,0,0,0,0,0,0,0,0.336255431980582,0.394061520403854,0.646882724578552,0.77005821767849,0.254094624222463,0,0,0,0.637938751653163,0.749007023947182,5.9832291840805,0,0.12269149171914,0,0,0,0,0.157702415033935,0.234282829985426,0,0,0,0,0,0.347534457872331,0,0,0.413536052245775,0.215714200818617,0,0,0,0,0,0,0,0,0,0,0,0.154209693802656,0.177561725313127,0.492762936082855,0,0.232420756919918,0,0.200506470303285,0,0,0.546273504020151,0.524497659837696,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.657779629937804,1.0457418040996,0,0,0,0,0.27470839445503,0.577566499444116,0,0,0,0.096670718292122,0.308097234229289,0.15350367472613,0.137836572484531,0,0.290033387828457,0.170453254832202,0.0890320356467374,0,0.192190067365106,0.255225424989168,0.10115778085555,0,0,0,0,0,0,0,0.143124886741991,0,0,0,0,0,0,0,0.179872457583315,0,0.117812402345686,0,0,0,0,0,0,0.272999822815972,0.282810863907425,0,0,0,0,0.578775534266688,0,0,0,0,0,0,0,0,0.422215270595328,0.329294892959902,0,0,0,0,0,0,0.43050537267123,0,0,0,0,0,0,0.476463550915578,0,0,0,0,0,1.92495971052672,0.490080431962063,1.30062222588003,0.865615277858669,1.06712765022621,0.159426272728822,0,0,0,0,0.561594356226918,0.228234679033192,0.313359791546046,0,0,0.1605880751037,0,0,0,0.307240764308458,0,0.333698283423817,0.390776190804081,0.835218521685727,1.23087398947712,0.270455678475983,0,0,0.18714054040822,0,0.36408156524854,0.222886768554957,0,0,0.296964680832639,0,0,1.40669416410513,0.111308705022906,0.16480387422676,29.3464317297911,0.19924798825107,0.552567831062295,1.0077309914171,1.02268682502155,0,0,0.0898683511473268,0,0.511572370226872,0,0,0,0,0.278304294485554,0,0.260427761085233,0.262379999988587,0,0.227586896570999,0,0.236387681767936,2.75794698593172,2.04123229368278,0.694499979733169,0.885741385813839,0.723578631752448,0,1.99042667876204,0.591095237907095,0.219385397153973,0.435753854075961,0,0.0769502585037971,0.113942055847001,0.23056390438806,0.0897576444097721,0.108647371922008,0,0,0,1.02193298195737,0,1.49590513710141,0.676786981851542,0.19606253431774,0.167821586975843,1.70778359451767,1.27149263184303,0.210998064528027,0.326465616318295,0.282706142867882,0,0,0.442287822516696,0,1.18608451472249,0.494255755786011,0.208843899010911,0.067401132980677,0,0.468528891450678,0.364909578431332,0.19566461893209,0.242780379534093,0.394584402849391,2.41981432097328,0.61214552326098,0.126373159256976,0,0.311064574191741,0,0,0,0,0.853828638089378,0.277349346026277,0,0,0.261177619741208,1.22308667769421,0,0.290268993867255,0.365446585430928,0.246346371159628,0.0969890164884194,0.794305140223502,1.12990370390266,0,0,0.823040347426423,0.195551382734803,0.160317640503067,0,0,0.288180834308212,0.458146384663663,0.171594997861965,0,0,0,0,0.104602846312333,0.203996435272644,0,0,0.684526894459965,0,0,0.262887354279314,0,0,0.717873024576814,0.599037001496973,0,0,0.201550417460179,0,0,0,0.164831716762333,0.404421263125109,0,0.169346664131569,0,0.544813624446302,0.321506296930038,0.137539436597234,0,0,0,0.728994679896296,0.335434687599266,0.394028536495991,0.104909176269996,0.105600336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| ||
|short_description=p6@SSX2IP | |short_description=p6@SSX2IP | ||
}} | }} |
Latest revision as of 12:21, 19 September 2015
Short description: | p6@SSX2IP |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_SSX2IP_5end |
Coexpression cluster: | C15_anaplastic_small_skeletal_neuroblastoma_parietal_temporal_tongue |
Association with transcript: | 16bp_to_ENST00000490476_5end |
EntrezGene: | SSX2IP |
HGNC: | 16509 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
astrocyte of the cerebral cortex | 9.82e-13 | 3 |
oligodendrocyte | 3.14e-09 | 7 |
macroglial cell | 3.14e-09 | 7 |
astrocyte | 3.14e-09 | 7 |
oligodendrocyte precursor cell | 3.14e-09 | 7 |
glial cell (sensu Vertebrata) | 5.97e-08 | 15 |
glial cell | 5.97e-08 | 15 |
glioblast | 5.97e-08 | 15 |
glioblast (sensu Vertebrata) | 5.97e-08 | 15 |
neuron associated cell | 4.78e-07 | 17 |
neuron associated cell (sensu Vertebrata) | 4.78e-07 | 17 |
Ontology term | p-value | n |
---|---|---|
regional part of telencephalon | 1.50e-21 | 32 |
cerebral cortex | 1.27e-20 | 25 |
pallium | 1.27e-20 | 25 |
brain grey matter | 3.94e-20 | 34 |
gray matter | 3.94e-20 | 34 |
telencephalon | 3.94e-20 | 34 |
cerebral hemisphere | 1.39e-18 | 32 |
regional part of forebrain | 3.11e-16 | 41 |
forebrain | 3.11e-16 | 41 |
anterior neural tube | 3.11e-16 | 41 |
future forebrain | 3.11e-16 | 41 |
brain | 8.46e-15 | 68 |
future brain | 8.46e-15 | 68 |
neocortex | 8.78e-15 | 20 |
regional part of nervous system | 7.21e-14 | 53 |
regional part of brain | 7.21e-14 | 53 |
regional part of cerebral cortex | 2.38e-13 | 22 |
pre-chordal neural plate | 2.78e-13 | 61 |
neural tube | 5.89e-13 | 56 |
neural rod | 5.89e-13 | 56 |
future spinal cord | 5.89e-13 | 56 |
neural keel | 5.89e-13 | 56 |
central nervous system | 8.09e-12 | 81 |
neural plate | 2.29e-10 | 82 |
presumptive neural plate | 2.29e-10 | 82 |
nervous system | 2.95e-10 | 89 |
neurectoderm | 1.03e-09 | 86 |
small intestine | 3.58e-08 | 4 |
occipital lobe | 4.24e-08 | 5 |
ecto-epithelium | 2.08e-07 | 104 |
Ontology term | p-value | n |
---|---|---|
chronic leukemia | 5.52e-08 | 8 |