FFCP PHASE1:Hg19::chr19:51223018..51223080,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=50944 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=15474 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=0bp_to_uc010yce.1_5end | |||
|cluster_id=chr19:51223018..51223080,- | |||
|coexpression_cluster_id=C3516 | |||
|description=CAGE_peak_1_at_SHANK1_5end | |||
|id=chr19:51223018..51223080,- | |||
|ontology_enrichment_celltype=CL:0000055!5.35e-20!180;CL:0000057!2.42e-10!75;CL:0000183!2.31e-09!59;CL:0000680!2.63e-09!57;CL:0000056!2.63e-09!57;CL:0000355!2.63e-09!57;CL:0000187!3.58e-09!54;CL:0000393!4.79e-09!60;CL:0000211!4.79e-09!60;CL:0000192!6.14e-09!42;CL:0000514!6.14e-09!42;CL:0000359!9.87e-07!32 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:2394;2.33e-08;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,3.52e-08,14 | |||
|ontology_enrichment_uberon=UBERON:0001049!1.02e-23!57;UBERON:0005068!1.02e-23!57;UBERON:0006241!1.02e-23!57;UBERON:0007135!1.02e-23!57;UBERON:0002616!2.09e-22!59;UBERON:0001017!9.38e-22!82;UBERON:0000955!2.95e-20!69;UBERON:0006238!2.95e-20!69;UBERON:0005743!3.37e-20!86;UBERON:0000073!7.20e-20!94;UBERON:0001016!7.20e-20!94;UBERON:0002780!2.68e-18!41;UBERON:0001890!2.68e-18!41;UBERON:0006240!2.68e-18!41;UBERON:0002346!4.04e-18!90;UBERON:0003080!2.25e-17!42;UBERON:0002020!6.54e-17!34;UBERON:0003528!6.54e-17!34;UBERON:0001893!7.07e-17!34;UBERON:0001869!2.84e-16!32;UBERON:0002791!3.55e-16!33;UBERON:0003075!4.97e-16!86;UBERON:0007284!4.97e-16!86;UBERON:0002619!2.53e-15!22;UBERON:0001950!7.19e-14!20;UBERON:0000956!1.14e-12!25;UBERON:0000203!1.14e-12!25;UBERON:0000025!6.86e-12!194;UBERON:0000033!5.28e-11!123;UBERON:0000153!5.43e-11!129;UBERON:0007811!5.43e-11!129;UBERON:0003056!1.68e-10!61;UBERON:0000914!2.53e-10!83;UBERON:0002329!2.53e-10!83;UBERON:0003077!2.53e-10!83;UBERON:0003059!2.53e-10!83;UBERON:0007282!2.53e-10!83;UBERON:0009618!2.53e-10!83;UBERON:0007285!2.53e-10!83;UBERON:0000924!4.22e-10!173;UBERON:0006601!4.22e-10!173;UBERON:0007023!9.35e-10!115;UBERON:0004290!1.58e-09!70;UBERON:0001134!3.21e-09!61;UBERON:0002036!3.21e-09!61;UBERON:0003082!3.21e-09!61;UBERON:0000119!3.79e-09!312;UBERON:0002385!4.92e-09!63;UBERON:0001015!4.92e-09!63;UBERON:0000383!4.92e-09!63;UBERON:0000483!5.31e-09!309;UBERON:0004121!8.99e-09!169;UBERON:0000475!1.44e-08!365;UBERON:0003076!1.46e-07!15;UBERON:0003057!1.46e-07!15;UBERON:0004111!1.58e-07!241;UBERON:0001637!2.30e-07!42;UBERON:0003509!2.30e-07!42;UBERON:0004572!2.30e-07!42;UBERON:0000477!3.51e-07!286 | |||
|ontology_enrichment_uberon_v019=UBERON:0002619;7.05e-21;22!UBERON:0001893;6.87e-20;34!UBERON:0001869;1.05e-19;32!UBERON:0003528;1.20e-19;34!UBERON:0002020;1.20e-19;34!UBERON:0002791;3.85e-19;32!UBERON:0001950;7.11e-19;20!UBERON:0002780;6.58e-18;41!UBERON:0001890;6.58e-18;41!UBERON:0000073;7.81e-18;53!UBERON:0002616;7.81e-18;53!UBERON:0000956;2.57e-17;25!UBERON:0000203;2.57e-17;25!UBERON:0000955;1.57e-12;68!UBERON:0001017;1.15e-11;75!UBERON:0001016;2.24e-10;83!UBERON:0002420;1.20e-07;9!UBERON:0007245;1.20e-07;9!UBERON:0010009;1.20e-07;9!UBERON:0010011;1.20e-07;9!UBERON:0000454;1.20e-07;9!UBERON:0004732;1.60e-07;13!UBERON:0000125;2.37e-07;9!UBERON:0002308;2.37e-07;9!UBERON:0004733;3.01e-07;12!UBERON:0002028;3.01e-07;12!UBERON:0000200;3.18e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001049,2.80e-32,56;UBERON:0005068,2.80e-32,56;UBERON:0006241,2.80e-32,56;UBERON:0007135,2.80e-32,56;UBERON:0000073,1.12e-30,53;UBERON:0002616,1.12e-30,53;UBERON:0001017,1.12e-26,81;UBERON:0000955,1.42e-25,68;UBERON:0006238,1.42e-25,68;UBERON:0001016,3.51e-25,89;UBERON:0002780,8.85e-25,41;UBERON:0001890,8.85e-25,41;UBERON:0003080,8.85e-25,41;UBERON:0006240,8.85e-25,41;UBERON:0002346,1.38e-24,86;UBERON:0003528,4.46e-23,34;UBERON:0002020,4.46e-23,34;UBERON:0001893,4.97e-23,34;UBERON:0001869,3.30e-22,32;UBERON:0003075,1.13e-21,82;UBERON:0007284,1.13e-21,82;UBERON:0002791,2.30e-21,32;UBERON:0002619,8.25e-21,22;UBERON:0001950,8.15e-19,20;UBERON:0000956,2.93e-17,25;UBERON:0000203,2.93e-17,25;UBERON:0010314,1.33e-16,132;UBERON:0003056,2.93e-16,61;UBERON:0010371,1.08e-13,104;UBERON:0004121,1.16e-12,171;UBERON:0000924,1.16e-12,171;UBERON:0006601,1.16e-12,171;UBERON:0000025,7.62e-11,192;UBERON:0007023,1.31e-09,114;UBERON:0003076,1.32e-08,15;UBERON:0003057,1.32e-08,15;UBERON:0002420,1.53e-07,9;UBERON:0007245,1.53e-07,9;UBERON:0010009,1.53e-07,9;UBERON:0010011,1.53e-07,9;UBERON:0000454,1.53e-07,9;UBERON:0004732,2.19e-07,13;UBERON:0000125,2.89e-07,9;UBERON:0002308,2.89e-07,9;UBERON:0000200,3.27e-07,6;UBERON:0004733,4.02e-07,12;UBERON:0002028,4.02e-07,12;UBERON:0007277,4.02e-07,12 | |||
|phase1_expression=0.54503513781167,0.214100523890983,0.845726424575827,0,0,0,0,1.26343974685366,0,0.982935746006035,0,0,0,0.866364470720326,0.331397375727916,2.01697543935533,1.80808358407193,0.730310090387373,2.43966399395253,0.492484232307152,0.204000691244253,1.25381888591235,0,0,0.251085279189606,0,0,0,0,0,0.154816123316076,0,0,0,0,0,2.34880351467878,0,0,0.217010870715852,0,0,0,0,0,0,0,0,0.309706370895104,0,0.256160706529101,0.236482229888585,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.622822248995575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.587237189370939,0,0,0,1.84368859342554,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.318565414324097,0,0,0.451725357233318,0.76791966692651,0,0.236777252044017,0,0,0,1.15859523106239,0,0.670700859703636,0.767175371061182,0,1.50401373190767,0.289693037921647,0.795285947051099,0.973269740605272,0,0,0.087834785693126,5.17367348215965,0,0,0,0,0,5.72377498332821,4.57595928624102,5.57186251994347,0,0.860234595106124,0.694281003215189,1.69592382577203,1.25849830862972,1.6507082516404,0.835979866147242,0.258416759169329,0,0,0,0,0,0,1.62028389576352,0.17859945656816,0.22452937262617,0.112611480483322,1.53316637465883,0,1.46561395144326,0,0,0,1.98788780678127,0.506522046658319,2.1185468930115,1.72101972449288,0.354668382198357,1.12135520028461,2.1349799145941,0.24666754841716,1.8672662123986,0.269421344139376,0.490385709340376,0.908144565869588,2.30470369792,1.17160715916898,1.24864030732128,1.71141546463335,1.04614076386261,0.704606991862589,0.809364721840658,0.702254033511242,0.61246251376468,1.71968044236475,0.929932030581889,4.75201142912821,1.23633464639278,0,2.87447256726495,2.02003336744879,1.25118519871964,0,2.63386572528503,0.919463387397059,1.65261864797256,1.47461838108027,2.15267562826634,0.427114777637135,1.69545520927649,1.50045548042201,1.33968288009971,1.8034837803194,0.930584281657949,1.35021065793013,0.779496041289589,2.52433774244115,1.84099797284599,1.2931684545505,1.06502877754984,2.72030665214629,3.05209066158878,0,0,0,0.853815942907168,1.59035721985782,0.69716365721711,0.725627385107593,0.504641701751257,0.72995471815166,0,0,2.76269842704961,0,0,0,0,0,0,0,0,0,0,0,0,0,2.4694440679884,8.82052268313252,0,0,0,0,0.122988438543114,0.343135620597051,0.219500570817251,0,0,0,1.3032332212413,0,0,0,0.117408694235822,0.144366447761074,0,0,0,0,0,0,0,0,0.16798212819886,0.141775097242386,0,0,0,0,0,0,0,0.12624243342638,2.22242630022592,6.11181480893244,4.68869788840188,5.13217338068116,3.18765227380303,0.600686115687835,1.71495859578347,0.560655421726804,0.43596006883328,0.4400297149257,0.646358578788889,0,0,2.39344304926383,2.08014873822732,1.02882949704857,0,0.532844358032199,0.57191197463259,3.25572963234866,1.64648067356154,0,0.355391948742546,0,3.91871190177462,10.4584015032035,4.99864955910285,0,0,0,0.479249710983165,0,8.5582143024431,0.289562613335158,0.61642896765115,1.07436577943937,0,0,0.215627574859517,0.256686072559497,0.254094624222463,1.30139853857622,6.18631050222156,3.51784157202132,0.637938751653163,0,0,0,0.49076596687656,0.500170521059677,0.271265023699736,1.03985430765404,0.178428988797162,0.630809660135739,0.702848489956279,1.80567659836631,0,2.0694614258501,1.99267679560631,4.60922921354258,2.69339204851057,1.17480694477644,1.71571711905428,0.82707210449155,0,0,0,0,0.30239029332968,0.992431231275107,0.61384789315225,1.12264037773229,0.896974044789907,0.511707249066704,1.76939313257968,0,2.31314540703983,3.01854933032316,1.88892458831761,4.67328986265259,0.813472649219715,0,0.200506470303285,0,0.34444334449382,0.728364672026868,1.57349297951309,0.902399225814824,0,0,0,0.105551628892876,0,0,0,1.54227252690289,0.541892875087706,1.50506932156456,0,0,0,0,0,0,0,0,0.103041011647722,1.19040304263846,1.65018999841176,0.574265537996172,0,1.6068392984416,0.48335359146061,0.462145851343933,0,0.827019434907183,0.751941714077915,1.16013355131383,1.02271952899321,1.4245125703478,0,0,0,0,2.78907329578371,3.46293581513704,4.8792608911242,0.924100740528266,2.12922412126809,7.82939692867565,3.52116016297448,0.429374660225974,0.744316738719335,0,1.71567174531442,1.79128453917934,0.42793898803392,1.90921948755562,3.92474320099615,1.61885211824983,2.19629623788844,1.7671860351853,1.61745985258653,0,2.52755073743389,1.46290121726877,0.731140468893853,0,0.545999645631943,0.424216295861138,1.13008116620243,4.41092274836899,1.32687795048244,1.31535265576129,1.73632660280006,1.31178950409327,0.811641507850816,3.0982349809975,0.563391205064483,1.72093622644862,0.982490410131212,0.35667105148125,6.03093808920016,0,0,1.51789269506286,3.14941248220485,0,0,0,0.0941438007767792,0,0,0,0,0,0,0.569647187174163,0.476463550915578,0,0,0,0,1.28188885352968,0.962479855263359,0,0,21.2075743075374,2.77453189058815,7.49303481825465,1.39705560002972,0,0,2.921597462471,0,4.79292825969704,0,2.50634477090067,0,8.18999183028868,7.66838887325981,8.51692475380653,0,4.60861146462687,4.2498460499559,4.67177596793344,1.56310476321632,2.50565556505718,0,0,19.9843180798692,0,0,0.146508179271894,0.48544208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| |||
|short_description=p1@SHANK1 | |||
}} |
Latest revision as of 12:41, 19 September 2015
Short description: | p1@SHANK1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SHANK1_5end |
Coexpression cluster: | C3516_neuroectodermal_insula_temporal_amygdala_hippocampus_frontal_postcentral |
Association with transcript: | 0bp_to_uc010yce.1_5end |
EntrezGene: | SHANK1 |
HGNC: | 15474 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 3.52e-08 | 14 |