FFCP PHASE1:Hg19::chr1:89829425..89829479,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr1:89829425..89829479,+ to FFCP PHASE1:Hg19::chr1:89829425..89829479,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=163351 | |EntrezGene=163351 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=25395 | |HGNC=25395 | ||
|TSSclassifier=strong | |||
|UniProt=Q6ZN66 | |UniProt=Q6ZN66 | ||
|association_with_transcript=0bp_to_NM_198460,uc001dnf.2,uc010ost.1_5end | |||
|cluster_id=chr1:89829425..89829479,+ | |||
|description=CAGE_peak_2_at_GBP6_5end | |||
|id=chr1:89829425..89829479,+ | |||
|ontology_enrichment_celltype=CL:0002076!8.09e-27!43;CL:0002368!3.72e-19!13;CL:0000223!1.42e-18!59;CL:0000066!1.26e-17!254;CL:0002202!9.04e-13!9;CL:0002632!9.04e-13!9;CL:0002159!9.89e-13!13;CL:0002251!2.86e-12!21;CL:0000076!9.13e-08!62;CL:0000244!5.18e-07!4;CL:0000731!5.18e-07!4;CL:0002621!6.98e-07!3;CL:0002166!7.82e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0002368;1.04e-31;13!CL:0002076;2.01e-26;42!CL:0002202;6.78e-21;9!CL:0002632;6.78e-21;9!CL:0002159;2.18e-16;14!CL:0002251;7.32e-12;20!CL:0002621;1.51e-10;3!CL:0002166;1.68e-10;3!CL:0002328;5.56e-10;3!CL:0000307;6.49e-10;3!CL:0002077;1.15e-07;34!CL:0000575;2.85e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002076,4.47e-34,42;CL:0002368,1.12e-31,13;CL:0000223,6.05e-23,58;CL:0002202,7.88e-21,9;CL:0002632,7.88e-21,9;CL:0000066,4.70e-17,253;CL:0002159,2.63e-16,14;CL:0002251,6.99e-12,20;CL:0002621,1.44e-10,3;CL:0002166,1.74e-10,3;CL:0000076,2.04e-10,63;CL:0002328,5.74e-10,3;CL:0000068,7.81e-10,3;CL:0000069,7.81e-10,3;CL:0000307,7.81e-10,3;CL:0000377,7.81e-10,3;CL:0002077,8.48e-09,34;CL:0000575,3.04e-07,2 | |||
|ontology_enrichment_development_v019=CL:0000223;4.09e-13;58!CL:0000377;6.49e-10;3!UBERON:0008814;3.18e-07;2!UBERON:0010056;3.18e-07;2 | |||
|ontology_enrichment_disease=DOID:1749!6.13e-18!14 | |||
|ontology_enrichment_disease_v019=DOID:1749;9.24e-22;14 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,9.46e-22,14 | |||
|ontology_enrichment_uberon=UBERON:0001004!5.45e-19!72;UBERON:0004119!7.58e-18!169;UBERON:0000925!7.58e-18!169;UBERON:0006595!7.58e-18!169;UBERON:0000065!2.91e-16!53;UBERON:0001007!2.60e-13!155;UBERON:0001555!2.60e-13!155;UBERON:0007026!2.60e-13!155;UBERON:0005178!5.04e-13!34;UBERON:0002224!5.04e-13!34;UBERON:0005911!7.50e-13!82;UBERON:0005181!1.66e-12!35;UBERON:0007196!5.70e-12!14;UBERON:0001558!5.70e-12!14;UBERON:0000974!3.02e-11!10;UBERON:0003729!1.09e-10!5;UBERON:0005153!1.34e-10!37;UBERON:0000161!6.54e-10!35;UBERON:0005157!1.97e-09!51;UBERON:0000072!2.04e-09!46;UBERON:0000344!2.25e-09!12;UBERON:0000166!3.70e-09!21;UBERON:0003343!7.71e-09!4;UBERON:0004785!7.71e-09!4;UBERON:0000365!1.14e-08!5;UBERON:0000077!1.22e-08!130;UBERON:0004921!1.83e-08!129;UBERON:0004185!1.83e-08!129;UBERON:0008947!2.60e-08!38;UBERON:0003258!2.60e-08!38;UBERON:0001041!2.73e-08!98;UBERON:0004807!4.50e-08!28;UBERON:0002048!1.34e-07!22;UBERON:0000117!1.34e-07!22;UBERON:0000171!1.34e-07!22;UBERON:0000170!1.34e-07!22;UBERON:0005597!1.34e-07!22;UBERON:0000118!1.34e-07!22;UBERON:0000165!1.49e-07!28;UBERON:0000930!1.49e-07!28;UBERON:0006562!3.59e-07!11;UBERON:0005910!3.83e-07!6;UBERON:0001949!6.98e-07!3;UBERON:0000915!7.38e-07!52;UBERON:0003126!9.75e-07!7;UBERON:0001005!9.75e-07!7 | |||
|ontology_enrichment_uberon_v019=UBERON:0000974;4.38e-19;6!UBERON:0007196;1.01e-18;15!UBERON:0001558;1.01e-18;15!UBERON:0003729;2.85e-15;13!UBERON:0005178;3.98e-15;34!UBERON:0002224;3.98e-15;34!UBERON:0000344;1.59e-14;20!UBERON:0005181;3.12e-14;35!UBERON:0003343;7.49e-14;4!UBERON:0004785;7.49e-14;4!UBERON:0000165;6.98e-12;28!UBERON:0003126;6.90e-11;7!UBERON:0001005;6.90e-11;7!UBERON:0001949;1.51e-10;3!UBERON:0000065;2.10e-10;44!UBERON:0001723;5.23e-10;3!UBERON:0001033;5.23e-10;3!UBERON:0004815;5.56e-10;3!UBERON:0002031;5.56e-10;3!UBERON:0004807;5.97e-10;22!UBERON:0000161;8.27e-10;19!UBERON:0000166;8.27e-10;19!UBERON:0001004;3.82e-09;65!UBERON:0001708;5.77e-08;4!UBERON:0008895;5.77e-08;4!UBERON:0002048;1.59e-07;22!UBERON:0000117;1.59e-07;22!UBERON:0000171;1.59e-07;22!UBERON:0000170;1.59e-07;22!UBERON:0005911;2.59e-07;36!UBERON:0003127;3.84e-07;2!UBERON:0000341;6.01e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001004,1.04e-23,74;UBERON:0000065,1.62e-19,54;UBERON:0007196,1.16e-18,15;UBERON:0001558,1.16e-18,15;UBERON:0004119,2.81e-17,160;UBERON:0000925,2.81e-17,160;UBERON:0006595,2.81e-17,160;UBERON:0005178,9.75e-17,34;UBERON:0002224,9.75e-17,34;UBERON:0005181,3.73e-16,35;UBERON:0003729,2.65e-15,13;UBERON:0000344,1.45e-14,20;UBERON:0003343,7.25e-14,4;UBERON:0004785,7.25e-14,4;UBERON:0001007,7.30e-14,145;UBERON:0001555,7.30e-14,145;UBERON:0007026,7.30e-14,145;UBERON:0000153,8.61e-14,62;UBERON:0007811,8.61e-14,62;UBERON:0000166,6.14e-13,22;UBERON:0000033,2.02e-12,56;UBERON:0003102,2.90e-12,99;UBERON:0000161,3.31e-12,36;UBERON:0000165,2.09e-11,29;UBERON:0000930,2.09e-11,29;UBERON:0000974,3.73e-11,10;UBERON:0000072,3.92e-11,47;UBERON:0003126,8.10e-11,7;UBERON:0001005,8.10e-11,7;UBERON:0008947,1.40e-10,38;UBERON:0003258,1.40e-10,38;UBERON:0001949,1.44e-10,3;UBERON:0001041,2.81e-10,87;UBERON:0001723,5.56e-10,3;UBERON:0001033,5.56e-10,3;UBERON:0010056,5.56e-10,3;UBERON:0004815,5.74e-10,3;UBERON:0002031,5.74e-10,3;UBERON:0000915,1.02e-09,52;UBERON:0001444,1.31e-09,49;UBERON:0004921,8.31e-09,118;UBERON:0005157,5.42e-08,47;UBERON:0001708,5.91e-08,4;UBERON:0008895,5.91e-08,4;UBERON:0005153,1.32e-07,37;UBERON:0002048,1.48e-07,22;UBERON:0000117,1.48e-07,22;UBERON:0000171,1.48e-07,22;UBERON:0000170,1.48e-07,22;UBERON:0005597,1.48e-07,22;UBERON:0000118,1.48e-07,22;UBERON:0004807,1.76e-07,28;UBERON:0003127,4.02e-07,2;UBERON:0000341,6.20e-07,2;UBERON:0005911,8.97e-07,82 | |||
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| ||
|short_description=p2@GBP6 | |||
}} | }} |
Latest revision as of 17:16, 19 September 2015
Short description: | p2@GBP6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_GBP6_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_NM_198460, uc001dnf.2, uc010ost.1_5end |
EntrezGene: | GBP6 |
HGNC: | 25395 |
UniProt: | Q6ZN66 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endo-epithelial cell | 4.47e-34 | 42 |
respiratory epithelial cell | 1.12e-31 | 13 |
endodermal cell | 6.05e-23 | 58 |
epithelial cell of tracheobronchial tree | 7.88e-21 | 9 |
epithelial cell of lower respiratory tract | 7.88e-21 | 9 |
epithelial cell | 4.70e-17 | 253 |
general ecto-epithelial cell | 2.63e-16 | 14 |
epithelial cell of alimentary canal | 6.99e-12 | 20 |
gingival epithelial cell | 1.44e-10 | 3 |
epithelial cell of Malassez | 1.74e-10 | 3 |
squamous epithelial cell | 2.04e-10 | 63 |
bronchial epithelial cell | 5.74e-10 | 3 |
duct epithelial cell | 7.81e-10 | 3 |
branched duct epithelial cell | 7.81e-10 | 3 |
tracheal epithelial cell | 7.81e-10 | 3 |
tracheoblast | 7.81e-10 | 3 |
ecto-epithelial cell | 8.48e-09 | 34 |
corneal epithelial cell | 3.04e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 9.46e-22 | 14 |